data_89Y
#

_chem_comp.id                                   89Y
_chem_comp.name                                 "(3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-one"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H8 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-01-13
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       148.114
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    89Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5UHZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
89Y  O2  O2  O  0  1  N  N  N  17.774  -24.952   9.948  -0.964  -1.907   0.133  O2  89Y   1  
89Y  C2  C2  C  0  1  N  N  R  17.188  -26.176   9.502  -0.631  -0.668  -0.495  C2  89Y   2  
89Y  C1  C1  C  0  1  N  N  N  16.709  -27.021  10.626  -1.676   0.380  -0.180  C1  89Y   3  
89Y  O1  O1  O  0  1  N  N  N  17.347  -27.231  11.644  -2.836   0.326  -0.511  O1  89Y   4  
89Y  O4  O4  O  0  1  N  N  N  15.397  -27.570  10.344  -1.121   1.378   0.523  O4  89Y   5  
89Y  C4  C4  C  0  1  N  N  N  15.005  -27.182   9.014   0.324   1.380   0.327  C4  89Y   6  
89Y  C3  C3  C  0  1  N  N  R  15.898  -25.977   8.685   0.683  -0.104   0.091  C3  89Y   7  
89Y  O3  O3  O  0  1  N  N  N  15.159  -24.848   9.169   1.010  -0.751   1.323  O3  89Y   8  
89Y  C5  C5  C  0  1  N  N  N  16.174  -25.753   7.195   1.832  -0.235  -0.911  C5  89Y   9  
89Y  O5  O5  O  0  1  N  N  N  17.331  -26.454   6.703   2.994   0.413  -0.390  O5  89Y  10  
89Y  H1  H1  H  0  1  N  N  N  17.990  -25.021  10.871  -1.805  -2.283  -0.161  H1  89Y  11  
89Y  H2  H2  H  0  1  N  N  N  17.908  -26.745   8.895  -0.540  -0.801  -1.573  H2  89Y  12  
89Y  H3  H3  H  0  1  N  N  N  13.943  -26.897   8.990   0.589   1.979  -0.545  H3  89Y  13  
89Y  H4  H4  H  0  1  N  N  N  15.181  -28.002   8.302   0.828   1.760   1.216  H4  89Y  14  
89Y  H5  H5  H  0  1  N  N  N  14.974  -24.963  10.094   1.776  -0.373   1.775  H5  89Y  15  
89Y  H6  H6  H  0  1  N  N  N  16.325  -24.676   7.029   2.049  -1.290  -1.080  H6  89Y  16  
89Y  H7  H7  H  0  1  N  N  N  15.296  -26.092   6.626   1.547   0.233  -1.853  H7  89Y  17  
89Y  H8  H8  H  0  1  N  N  N  17.443  -26.271   5.777   3.764   0.370  -0.974  H8  89Y  18  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
89Y  O5  C5  SING  N  N   1  
89Y  C5  C3  SING  N  N   2  
89Y  C3  C4  SING  N  N   3  
89Y  C3  O3  SING  N  N   4  
89Y  C3  C2  SING  N  N   5  
89Y  C4  O4  SING  N  N   6  
89Y  C2  O2  SING  N  N   7  
89Y  C2  C1  SING  N  N   8  
89Y  O4  C1  SING  N  N   9  
89Y  C1  O1  DOUB  N  N  10  
89Y  O2  H1  SING  N  N  11  
89Y  C2  H2  SING  N  N  12  
89Y  C4  H3  SING  N  N  13  
89Y  C4  H4  SING  N  N  14  
89Y  O3  H5  SING  N  N  15  
89Y  C5  H6  SING  N  N  16  
89Y  C5  H7  SING  N  N  17  
89Y  O5  H8  SING  N  N  18  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
89Y  SMILES            ACDLabs               12.01  "OC1C(=O)OCC1(O)CO"  
89Y  InChI             InChI                 1.03   "InChI=1S/C5H8O5/c6-1-5(9)2-10-4(8)3(5)7/h3,6-7,9H,1-2H2/t3-,5+/m0/s1"  
89Y  InChIKey          InChI                 1.03   MTSAHRPUAGVYCZ-WVZVXSGGSA-N  
89Y  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@]1(O)COC(=O)[C@@H]1O"  
89Y  SMILES            CACTVS                3.385  "OC[C]1(O)COC(=O)[CH]1O"  
89Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1[C@@]([C@H](C(=O)O1)O)(CO)O"  
89Y  SMILES            "OpenEye OEToolkits"  2.0.6  "C1C(C(C(=O)O1)O)(CO)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
89Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-one"  
89Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(3~{R},4~{R})-4-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-one"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
89Y  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
89Y  "CARBOHYDRATE RING"                    furanose  PDB  ?  
89Y  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
89Y  "Create component"          2017-01-13  RCSB  
89Y  "Initial release"           2017-02-01  RCSB  
89Y  "Modify atom id"            2020-05-04  RCSB  
89Y  "Other modification"        2020-07-03  RCSB  
89Y  "Modify internal type"      2020-07-17  RCSB  
89Y  "Modify linking type"       2020-07-17  RCSB  
89Y  "Modify component atom id"  2020-07-17  RCSB  
##
