data_83Y
#

_chem_comp.id                                   83Y
_chem_comp.name                                 3-O-sulfo-alpha-L-rhamnopyranose
_chem_comp.type                                 "L-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O8 S"
_chem_comp.mon_nstd_parent_comp_id              RAM
_chem_comp.pdbx_synonyms                        
;6-deoxy-3-O-sulfo-alpha-L-mannopyranose; L-rhamnose-3-sulphate; 3-O-sulfo-alpha-L-rhamnose; 3-O-sulfo-L-rhamnose;
3-O-sulfo-rhamnose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-01-05
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       244.220
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    83Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5UAS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  83Y  6-deoxy-3-O-sulfo-alpha-L-mannopyranose  PDB  ?  
2  83Y  L-rhamnose-3-sulphate                    PDB  ?  
3  83Y  3-O-sulfo-alpha-L-rhamnose               PDB  ?  
4  83Y  3-O-sulfo-L-rhamnose                     PDB  ?  
5  83Y  3-O-sulfo-rhamnose                       PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
83Y  C1   C1   C  0  1  N  N  R  10.919  98.258  24.467  -1.901   1.596   0.235  C1   83Y   1  
83Y  C2   C2   C  0  1  N  N  R   9.768  97.718  23.630  -0.560   1.324  -0.450  C2   83Y   2  
83Y  C3   C3   C  0  1  N  N  R   9.904  96.216  23.443  -0.050  -0.057  -0.028  C3   83Y   3  
83Y  C4   C4   C  0  1  N  N  S   9.920  95.532  24.808  -1.106  -1.109  -0.382  C4   83Y   4  
83Y  C5   C5   C  0  1  N  N  S  11.117  96.117  25.567  -2.427  -0.743   0.301  C5   83Y   5  
83Y  C6   C6   C  0  1  N  N  N  11.288  95.538  26.959  -3.503  -1.756  -0.096  C6   83Y   6  
83Y  O1   O1   O  0  1  N  Y  N  12.148  98.113  23.743  -1.718   1.615   1.652  O1   83Y   7  
83Y  O1S  O1S  O  0  1  N  N  N   8.074  94.557  20.573   3.513  -0.165  -0.832  O1S  83Y   8  
83Y  O2   O2   O  0  1  N  N  N   8.521  98.018  24.260  -0.732   1.357  -1.868  O2   83Y   9  
83Y  O2S  O2S  O  0  1  N  N  N   9.701  96.334  20.315   2.149   1.215   0.743  O2S  83Y  10  
83Y  O3   O3   O  0  1  N  N  N   8.869  95.734  22.586   1.166  -0.350  -0.720  O3   83Y  11  
83Y  O3S  O3S  O  0  1  N  N  N  10.348  94.218  21.281   2.591  -1.066   1.141  O3S  83Y  12  
83Y  O5   O5   O  0  1  N  N  N  10.981  97.542  25.708  -2.829   0.565  -0.111  O5   83Y  13  
83Y  S    S    S  0  1  N  N  N   9.258  95.216  21.182   2.423  -0.003   0.065  S    83Y  14  
83Y  O4   O4   O  0  1  N  N  N  10.058  94.112  24.639  -0.673  -2.392   0.073  O4   83Y  15  
83Y  H1   H1   H  0  1  N  N  N  10.733  99.324  24.666  -2.290   2.559  -0.094  H1   83Y  16  
83Y  H2   H2   H  0  1  N  N  N   9.806  98.196  22.640   0.162   2.086  -0.153  H2   83Y  17  
83Y  H3   H3   H  0  1  N  N  N  10.877  96.026  22.966   0.129  -0.068   1.047  H3   83Y  18  
83Y  H4   H4   H  0  1  N  N  N   8.993  95.772  25.349  -1.249  -1.133  -1.462  H4   83Y  19  
83Y  H5   H5   H  0  1  N  N  N  12.026  95.896  24.989  -2.294  -0.759   1.383  H5   83Y  20  
83Y  H61  H63  H  0  1  N  N  N  12.161  96.000  27.444  -3.197  -2.754   0.218  H61  83Y  21  
83Y  H62  H62  H  0  1  N  N  N  10.386  95.743  27.555  -4.444  -1.496   0.391  H62  83Y  22  
83Y  H63  H61  H  0  1  N  N  N  11.441  94.451  26.888  -3.637  -1.740  -1.177  H63  83Y  23  
83Y  HO1  H6   H  0  1  N  Y  N  12.866  98.450  24.266  -2.529   1.782   2.152  HO1  83Y  24  
83Y  HO2  HO2  H  0  1  N  Y  N   8.441  98.958  24.374  -1.058   2.203  -2.205  HO2  83Y  25  
83Y  HO4  H7   H  0  1  N  Y  N  10.067  93.691  25.490  -1.295  -3.108  -0.118  HO4  83Y  26  
83Y  H8   H8   H  0  1  N  N  N  10.048  93.386  20.935   3.368  -0.939   1.702  H8   83Y  27  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
83Y  O2S  S    DOUB  N  N   1  
83Y  O1S  S    DOUB  N  N   2  
83Y  S    O3S  SING  N  N   3  
83Y  S    O3   SING  N  N   4  
83Y  O3   C3   SING  N  N   5  
83Y  C3   C2   SING  N  N   6  
83Y  C3   C4   SING  N  N   7  
83Y  C2   O2   SING  N  N   8  
83Y  C2   C1   SING  N  N   9  
83Y  O1   C1   SING  N  N  10  
83Y  C1   O5   SING  N  N  11  
83Y  O4   C4   SING  N  N  12  
83Y  C4   C5   SING  N  N  13  
83Y  C5   O5   SING  N  N  14  
83Y  C5   C6   SING  N  N  15  
83Y  C1   H1   SING  N  N  16  
83Y  C2   H2   SING  N  N  17  
83Y  C3   H3   SING  N  N  18  
83Y  C4   H4   SING  N  N  19  
83Y  C5   H5   SING  N  N  20  
83Y  C6   H61  SING  N  N  21  
83Y  C6   H62  SING  N  N  22  
83Y  C6   H63  SING  N  N  23  
83Y  O1   HO1  SING  N  N  24  
83Y  O2   HO2  SING  N  N  25  
83Y  O4   HO4  SING  N  N  26  
83Y  O3S  H8   SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
83Y  SMILES            ACDLabs               12.01  "C1(OC(C(C(C1O)OS(=O)(=O)O)O)C)O"  
83Y  InChI             InChI                 1.03   "InChI=1S/C6H12O8S/c1-2-3(7)5(14-15(10,11)12)4(8)6(9)13-2/h2-9H,1H3,(H,10,11,12)/t2-,3-,4+,5+,6+/m0/s1"  
83Y  InChIKey          InChI                 1.03   PHTKRPBOKDCSPW-HGVZOGFYSA-N  
83Y  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1O[C@@H](O)[C@H](O)[C@H](O[S](O)(=O)=O)[C@H]1O"  
83Y  SMILES            CACTVS                3.385  "C[CH]1O[CH](O)[CH](O)[CH](O[S](O)(=O)=O)[CH]1O"  
83Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O)O)OS(=O)(=O)O)O"  
83Y  SMILES            "OpenEye OEToolkits"  2.0.6  "CC1C(C(C(C(O1)O)O)OS(=O)(=O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
83Y  "SYSTEMATIC NAME"                      ACDLabs               12.01  6-deoxy-3-O-sulfo-alpha-L-mannopyranose  
83Y  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  2.0.6  "[(2~{S},3~{S},4~{R},5~{R},6~{R})-2-methyl-3,5,6-tris(oxidanyl)oxan-4-yl] hydrogen sulfate"  
83Y  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    LRhap[3S]a  
83Y  "COMMON NAME"                          GMML                  1.0    3-sulfo-a-L-rhamnoopyranose  
#
_pdbx_chem_comp_related.comp_id            83Y
_pdbx_chem_comp_related.related_comp_id    RAM
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  83Y  C1   RAM  C1   "Carbohydrate core"  
 2  83Y  C2   RAM  C2   "Carbohydrate core"  
 3  83Y  C3   RAM  C3   "Carbohydrate core"  
 4  83Y  C4   RAM  C4   "Carbohydrate core"  
 5  83Y  C5   RAM  C5   "Carbohydrate core"  
 6  83Y  C6   RAM  C6   "Carbohydrate core"  
 7  83Y  O1   RAM  O1   "Carbohydrate core"  
 8  83Y  O2   RAM  O2   "Carbohydrate core"  
 9  83Y  O3   RAM  O3   "Carbohydrate core"  
10  83Y  O4   RAM  O4   "Carbohydrate core"  
11  83Y  O5   RAM  O5   "Carbohydrate core"  
12  83Y  H1   RAM  H1   "Carbohydrate core"  
13  83Y  H2   RAM  H2   "Carbohydrate core"  
14  83Y  H3   RAM  H3   "Carbohydrate core"  
15  83Y  H4   RAM  H4   "Carbohydrate core"  
16  83Y  H5   RAM  H5   "Carbohydrate core"  
17  83Y  HO1  RAM  HO1  "Carbohydrate core"  
18  83Y  H63  RAM  H63  "Carbohydrate core"  
19  83Y  H62  RAM  H62  "Carbohydrate core"  
20  83Y  H61  RAM  H61  "Carbohydrate core"  
21  83Y  HO4  RAM  HO4  "Carbohydrate core"  
22  83Y  HO2  RAM  HO2  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
83Y  "CARBOHYDRATE ISOMER"                  L         PDB  ?  
83Y  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
83Y  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
83Y  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
83Y  "Create component"          2017-01-05  RCSB  
83Y  "Initial release"           2017-03-29  RCSB  
83Y  "Other modification"        2020-07-03  RCSB  
83Y  "Modify parent residue"     2020-07-17  RCSB  
83Y  "Modify name"               2020-07-17  RCSB  
83Y  "Modify synonyms"           2020-07-17  RCSB  
83Y  "Modify internal type"      2020-07-17  RCSB  
83Y  "Modify linking type"       2020-07-17  RCSB  
83Y  "Modify atom id"            2020-07-17  RCSB  
83Y  "Modify component atom id"  2020-07-17  RCSB  
83Y  "Modify leaving atom flag"  2020-07-17  RCSB  
##
