data_7CY
#

_chem_comp.id                                   7CY
_chem_comp.name                                 "(1R,2S,3R,5R)-3-(6-amino-9H-purin-9-yl)-5-(hydroxymethyl)cyclopentane-1,2-diol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H15 N5 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Aristeromycin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-10-05
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       265.269
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7CY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5TJ9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7CY  N1     N1   N  0  1  Y  N  N  66.977  31.968  44.140  -4.374  -0.746   0.651  N1     7CY   1  
7CY  C2     C1   C  0  1  Y  N  N  66.479  33.068  44.742  -3.437  -1.532   1.147  C2     7CY   2  
7CY  C4     C2   C  0  1  Y  N  N  64.771  33.321  43.162  -1.745  -0.229   0.297  C4     7CY   3  
7CY  C5     C3   C  0  1  Y  N  N  65.246  32.135  42.445  -2.704   0.639  -0.251  C5     7CY   4  
7CY  C6     C4   C  0  1  Y  N  N  66.433  31.453  43.012  -4.062   0.341  -0.048  C6     7CY   5  
7CY  C8     C5   C  0  1  Y  N  N  63.506  32.972  41.440  -0.751   1.424  -0.770  C8     7CY   6  
7CY  "O2'"  O1   O  0  1  N  N  N  63.731  37.062  41.914   1.272  -1.866  -1.485  "O2'"  7CY   7  
7CY  "C2'"  C6   C  0  1  N  N  S  62.775  35.997  41.818   1.608  -0.575  -0.974  "C2'"  7CY   8  
7CY  "C3'"  C7   C  0  1  N  N  R  61.342  36.497  41.979   3.074  -0.549  -0.494  "C3'"  7CY   9  
7CY  "O3'"  O2   O  0  1  N  N  N  61.263  37.934  41.947   3.514  -1.874  -0.192  "O3'"  7CY  10  
7CY  "C4'"  C8   C  0  1  N  N  R  60.862  35.910  43.321   3.106   0.320   0.776  "C4'"  7CY  11  
7CY  "C5'"  C9   C  0  1  N  N  N  59.356  35.701  43.596   4.021   1.527   0.562  "C5'"  7CY  12  
7CY  "O5'"  O3   O  0  1  N  N  N  59.215  35.430  44.998   5.371   1.082   0.418  "O5'"  7CY  13  
7CY  "C1'"  C10  C  0  1  N  N  R  62.984  34.974  42.930   0.786  -0.266   0.302  "C1'"  7CY  14  
7CY  "C6'"  C11  C  0  1  N  N  N  61.612  34.600  43.431   1.658   0.791   1.024  "C6'"  7CY  15  
7CY  N9     N2   N  0  1  Y  N  N  63.729  33.775  42.499  -0.523   0.292  -0.046  N9     7CY  16  
7CY  N7     N3   N  0  1  Y  N  N  64.427  31.971  41.392  -2.031   1.626  -0.890  N7     7CY  17  
7CY  N3     N4   N  0  1  Y  N  N  65.410  33.734  44.275  -2.153  -1.292   0.983  N3     7CY  18  
7CY  N6     N5   N  0  1  N  N  N  66.962  30.348  42.440  -5.052   1.159  -0.564  N6     7CY  19  
7CY  H1     H1   H  0  1  N  N  N  66.961  33.429  45.639  -3.734  -2.405   1.710  H1     7CY  20  
7CY  H2     H2   H  0  1  N  N  N  62.706  33.105  40.727   0.018   2.060  -1.184  H2     7CY  21  
7CY  H3     H3   H  0  1  N  N  N  64.608  36.712  41.809   1.798  -2.135  -2.250  H3     7CY  22  
7CY  H4     H4   H  0  1  N  N  N  62.868  35.491  40.846   1.441   0.191  -1.732  H4     7CY  23  
7CY  H5     H5   H  0  1  N  N  N  60.727  36.071  41.172   3.711  -0.110  -1.263  H5     7CY  24  
7CY  H6     H6   H  0  1  N  N  N  60.358  38.204  42.050   3.497  -2.476  -0.948  H6     7CY  25  
7CY  H7     H7   H  0  1  N  N  N  61.243  36.571  44.114   3.457  -0.270   1.623  H7     7CY  26  
7CY  H8     H8   H  0  1  N  N  N  58.795  36.608  43.329   3.716   2.060  -0.338  H8     7CY  27  
7CY  H9     H9   H  0  1  N  N  N  58.980  34.851  43.008   3.948   2.194   1.421  H9     7CY  28  
7CY  H10    H10  H  0  1  N  N  N  58.297  35.296  45.204   6.008   1.796   0.279  H10    7CY  29  
7CY  H11    H11  H  0  1  N  N  N  63.534  35.461  43.749   0.675  -1.160   0.916  H11    7CY  30  
7CY  H12    H12  H  0  1  N  N  N  61.155  33.825  42.799   1.439   0.803   2.091  H12    7CY  31  
7CY  H13    H13  H  0  1  N  N  N  61.650  34.249  44.473   1.499   1.778   0.590  H13    7CY  32  
7CY  H14    H14  H  0  1  N  N  N  67.748  30.039  42.975  -4.812   1.949  -1.074  H14    7CY  33  
7CY  H15    H15  H  0  1  N  N  N  66.272  29.624  42.412  -5.986   0.942  -0.417  H15    7CY  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7CY  N7     C8     DOUB  Y  N   1  
7CY  N7     C5     SING  Y  N   2  
7CY  C8     N9     SING  Y  N   3  
7CY  "C2'"  "O2'"  SING  N  N   4  
7CY  "C2'"  "C3'"  SING  N  N   5  
7CY  "C2'"  "C1'"  SING  N  N   6  
7CY  "O3'"  "C3'"  SING  N  N   7  
7CY  "C3'"  "C4'"  SING  N  N   8  
7CY  N6     C6     SING  N  N   9  
7CY  C5     C6     DOUB  Y  N  10  
7CY  C5     C4     SING  Y  N  11  
7CY  N9     "C1'"  SING  N  N  12  
7CY  N9     C4     SING  Y  N  13  
7CY  "C1'"  "C6'"  SING  N  N  14  
7CY  C6     N1     SING  Y  N  15  
7CY  C4     N3     DOUB  Y  N  16  
7CY  "C4'"  "C6'"  SING  N  N  17  
7CY  "C4'"  "C5'"  SING  N  N  18  
7CY  "C5'"  "O5'"  SING  N  N  19  
7CY  N1     C2     DOUB  Y  N  20  
7CY  N3     C2     SING  Y  N  21  
7CY  C2     H1     SING  N  N  22  
7CY  C8     H2     SING  N  N  23  
7CY  "O2'"  H3     SING  N  N  24  
7CY  "C2'"  H4     SING  N  N  25  
7CY  "C3'"  H5     SING  N  N  26  
7CY  "O3'"  H6     SING  N  N  27  
7CY  "C4'"  H7     SING  N  N  28  
7CY  "C5'"  H8     SING  N  N  29  
7CY  "C5'"  H9     SING  N  N  30  
7CY  "O5'"  H10    SING  N  N  31  
7CY  "C1'"  H11    SING  N  N  32  
7CY  "C6'"  H12    SING  N  N  33  
7CY  "C6'"  H13    SING  N  N  34  
7CY  N6     H14    SING  N  N  35  
7CY  N6     H15    SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7CY  SMILES            ACDLabs               12.01  "n1cnc2c(c1N)ncn2C3C(O)C(C(C3)CO)O"  
7CY  InChI             InChI                 1.03   "InChI=1S/C11H15N5O3/c12-10-7-11(14-3-13-10)16(4-15-7)6-1-5(2-17)8(18)9(6)19/h3-6,8-9,17-19H,1-2H2,(H2,12,13,14)/t5-,6-,8-,9+/m1/s1"  
7CY  InChIKey          InChI                 1.03   UGRNVLGKAGREKS-GCXDCGAKSA-N  
7CY  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3C[C@H](CO)[C@@H](O)[C@H]3O"  
7CY  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3C[CH](CO)[CH](O)[CH]3O"  
7CY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(cn2)[C@@H]3C[C@@H]([C@H]([C@H]3O)O)CO)N"  
7CY  SMILES            "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(cn2)C3CC(C(C3O)O)CO)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7CY  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S,3R,5R)-3-(6-amino-9H-purin-9-yl)-5-(hydroxymethyl)cyclopentane-1,2-diol"  
7CY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(1~{R},2~{S},3~{R},5~{R})-3-(6-aminopurin-9-yl)-5-(hydroxymethyl)cyclopentane-1,2-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7CY  "Create component"  2016-10-05  RCSB  
7CY  "Initial release"   2016-10-19  RCSB  
7CY  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     7CY
_pdbx_chem_comp_synonyms.name        Aristeromycin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
