data_6SY
#

_chem_comp.id                                   6SY
_chem_comp.name                                 "Uridine-3',5'-cyclic monophosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H11 N2 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        cUMP
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-06-16
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       306.166
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6SY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5KHJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6SY  N1   N1   N  0  1  N  N  N  -18.661   0.821  -35.635   3.645   1.208   0.545  N1   6SY   1  
6SY  C2   C1   C  0  1  N  N  N  -19.155  -0.764  -33.525   3.369  -1.270  -0.577  C2   6SY   2  
6SY  C4   C2   C  0  1  N  N  R  -17.289  -1.101  -30.324  -1.112  -0.080  -1.160  C4   6SY   3  
6SY  C5   C3   C  0  1  N  N  N  -17.255  -2.508  -29.726  -1.993   1.077  -1.590  C5   6SY   4  
6SY  C6   C4   C  0  1  N  N  S  -18.589  -0.353  -30.160  -1.064  -0.130   0.391  C6   6SY   5  
6SY  O2   O1   O  0  1  N  N  N  -17.736  -2.430  -28.338  -3.343   0.746  -1.185  O2   6SY   6  
6SY  O4   O2   O  0  1  N  N  N  -19.227  -1.231  -26.503  -4.958  -0.677   0.358  O4   6SY   7  
6SY  P    P1   P  0  1  N  N  N  -19.070  -1.654  -27.953  -3.643   0.252   0.332  P    6SY   8  
6SY  O7   O3   O  0  1  N  N  N  -17.190   1.903  -34.371   1.446   1.429   0.419  O7   6SY   9  
6SY  C8   C5   C  0  1  N  N  N  -18.013   1.016  -34.468   2.427   0.741   0.215  C8   6SY  10  
6SY  C    C6   C  0  1  N  N  N  -19.550  -0.137  -35.799   4.744   0.460   0.320  C    6SY  11  
6SY  O    O4   O  0  1  N  N  N  -20.124  -0.258  -36.907   5.847   0.882   0.619  O    6SY  12  
6SY  N    N2   N  0  1  N  N  N  -18.252   0.223  -33.363   2.280  -0.477  -0.338  N    6SY  13  
6SY  C1   C7   C  0  1  N  N  N  -19.824  -0.959  -34.736   4.604  -0.821  -0.266  C1   6SY  14  
6SY  C3   C8   C  0  1  N  N  R  -17.493   0.386  -32.110   0.940  -0.964  -0.675  C3   6SY  15  
6SY  C7   C9   C  0  1  N  N  R  -18.308   0.921  -30.944   0.093  -1.112   0.614  C7   6SY  16  
6SY  O6   O5   O  0  1  N  N  N  -17.561   1.906  -30.204  -0.398  -2.448   0.744  O6   6SY  17  
6SY  O1   O6   O  0  1  N  N  N  -17.014  -0.945  -31.729   0.264  -0.002  -1.521  O1   6SY  18  
6SY  O5   O7   O  0  1  N  N  N  -18.861  -0.213  -28.786  -2.343  -0.609   0.815  O5   6SY  19  
6SY  O3   O8   O  0  1  N  N  N  -20.204  -2.383  -28.610  -3.833   1.423   1.217  O3   6SY  20  
6SY  H1   H1   H  0  1  N  N  N  -18.459   1.427  -36.405   3.734   2.089   0.942  H1   6SY  21  
6SY  H2   H2   H  0  1  N  N  N  -19.367  -1.423  -32.696   3.243  -2.247  -1.020  H2   6SY  22  
6SY  H3   H3   H  0  1  N  N  N  -16.529  -0.521  -29.780  -1.525  -1.014  -1.542  H3   6SY  23  
6SY  H4   H4   H  0  1  N  N  N  -17.906  -3.176  -30.309  -1.670   1.994  -1.097  H4   6SY  24  
6SY  H5   H5   H  0  1  N  N  N  -16.225  -2.894  -29.742  -1.948   1.198  -2.672  H5   6SY  25  
6SY  H6   H6   H  0  1  N  N  N  -19.394  -0.912  -30.660  -0.851   0.852   0.815  H6   6SY  26  
6SY  H7   H7   H  0  1  N  N  N  -20.080  -1.503  -26.184  -5.758  -0.234   0.044  H7   6SY  27  
6SY  H8   H8   H  0  1  N  N  N  -20.551  -1.751  -34.834   5.473  -1.435  -0.454  H8   6SY  28  
6SY  H9   H9   H  0  1  N  N  N  -16.636   1.053  -32.283   1.012  -1.923  -1.187  H9   6SY  29  
6SY  H10  H10  H  0  1  N  N  N  -19.253   1.344  -31.315   0.675  -0.832   1.492  H10  6SY  30  
6SY  H11  H11  H  0  1  N  N  N  -18.088   2.226  -29.481   0.296  -3.117   0.815  H11  6SY  31  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6SY  O   C    DOUB  N  N   1  
6SY  C   N1   SING  N  N   2  
6SY  C   C1   SING  N  N   3  
6SY  N1  C8   SING  N  N   4  
6SY  C1  C2   DOUB  N  N   5  
6SY  C8  O7   DOUB  N  N   6  
6SY  C8  N    SING  N  N   7  
6SY  C2  N    SING  N  N   8  
6SY  N   C3   SING  N  N   9  
6SY  C3  O1   SING  N  N  10  
6SY  C3  C7   SING  N  N  11  
6SY  O1  C4   SING  N  N  12  
6SY  C7  O6   SING  N  N  13  
6SY  C7  C6   SING  N  N  14  
6SY  C4  C6   SING  N  N  15  
6SY  C4  C5   SING  N  N  16  
6SY  C6  O5   SING  N  N  17  
6SY  C5  O2   SING  N  N  18  
6SY  O5  P    SING  N  N  19  
6SY  O3  P    DOUB  N  N  20  
6SY  O2  P    SING  N  N  21  
6SY  P   O4   SING  N  N  22  
6SY  N1  H1   SING  N  N  23  
6SY  C2  H2   SING  N  N  24  
6SY  C4  H3   SING  N  N  25  
6SY  C5  H4   SING  N  N  26  
6SY  C5  H5   SING  N  N  27  
6SY  C6  H6   SING  N  N  28  
6SY  O4  H7   SING  N  N  29  
6SY  C1  H8   SING  N  N  30  
6SY  C3  H9   SING  N  N  31  
6SY  C7  H10  SING  N  N  32  
6SY  O6  H11  SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6SY  InChI             InChI                 1.03   "InChI=1S/C9H11N2O8P/c12-5-1-2-11(9(14)10-5)8-6(13)7-4(18-8)3-17-20(15,16)19-7/h1-2,4,6-8,13H,3H2,(H,15,16)(H,10,12,14)/t4-,6-,7-,8-/m1/s1"  
6SY  InChIKey          InChI                 1.03   NXIHNBWNDCFCGL-XVFCMESISA-N  
6SY  SMILES_CANONICAL  CACTVS                3.385  "O[C@@H]1[C@@H]2O[P](O)(=O)OC[C@H]2O[C@H]1N3C=CC(=O)NC3=O"  
6SY  SMILES            CACTVS                3.385  "O[CH]1[CH]2O[P](O)(=O)OC[CH]2O[CH]1N3C=CC(=O)NC3=O"  
6SY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "C1[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)OP(=O)(O1)O"  
6SY  SMILES            "OpenEye OEToolkits"  2.0.5  "C1C2C(C(C(O2)N3C=CC(=O)NC3=O)O)OP(=O)(O1)O"  
#
_pdbx_chem_comp_identifier.comp_id          6SY
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "1-[(4~{a}~{R},6~{R},7~{R},7~{a}~{S})-2,7-bis(oxidanyl)-2-oxidanylidene-4~{a},6,7,7~{a}-tetrahydro-4~{H}-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]pyrimidine-2,4-dione"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6SY  "Create component"  2016-06-16  RCSB  
6SY  "Initial release"   2016-09-14  RCSB  
6SY  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6SY
_pdbx_chem_comp_synonyms.name        cUMP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
