data_6PY
#

_chem_comp.id                                   6PY
_chem_comp.name                                 
;5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-[(2-methoxyethyl)carbamoyl]-D-glycero-D-galacto-non-2-enon
 ic acid
;

_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C16 H27 N5 O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-[(2-methoxyethyl)carbamoyl]-D-glycero-D-galacto-non-2-
 enonic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-05-19
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       433.414
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6PY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5JYY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6PY
_pdbx_chem_comp_synonyms.name        
;5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-[(2-methoxyethyl)carbamoyl]-D-glycero-D-galacto-non-2-
 enonic acid
;

_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6PY  N4    N12  N  0  1  N  N  N  375.152  155.990  62.637  -2.848  -2.055   0.142  N4    6PY   1  
6PY  C17   C17  C  0  1  N  N  N  377.935  147.036  67.056   5.347  -3.234   2.916  C17   6PY   2  
6PY  C20   C20  C  0  1  N  N  N  375.656  149.192  65.438   4.762  -0.737   0.209  C20   6PY   3  
6PY  C21   C21  C  0  1  N  N  N  376.774  150.828  63.918   2.617   0.303  -0.295  C21   6PY   4  
6PY  C11   C28  C  0  1  N  N  N  373.871  152.139  60.494   0.127  -3.125  -2.937  C11   6PY   5  
6PY  C6    C01  C  0  1  N  N  R  378.031  153.672  62.430  -0.905   1.073  -0.667  C6    6PY   6  
6PY  C5    C02  C  0  1  N  N  R  376.560  154.113  62.413  -1.135  -0.438  -0.520  C5    6PY   7  
6PY  C4    C03  C  0  1  N  N  S  376.483  155.639  62.334  -2.633  -0.676  -0.303  C4    6PY   8  
6PY  C3    C04  C  0  1  N  N  N  377.484  156.312  63.303  -3.145   0.275   0.745  C3    6PY   9  
6PY  C2    C05  C  0  1  N  N  N  378.556  155.620  63.756  -2.478   1.363   1.100  C2    6PY  10  
6PY  O6    O06  O  0  1  N  N  N  378.681  154.293  63.472  -1.283   1.706   0.559  O6    6PY  11  
6PY  C7    C07  C  0  1  N  N  R  378.192  152.183  62.605   0.573   1.344  -0.953  C7    6PY  12  
6PY  C8    C08  C  0  1  N  N  R  379.646  151.751  62.535   0.825   2.853  -0.946  C8    6PY  13  
6PY  C9    C09  C  0  1  N  N  N  379.793  150.276  62.760   2.303   3.125  -1.232  C9    6PY  14  
6PY  O9    O10  O  0  1  N  N  N  379.204  149.468  61.777   2.562   4.525  -1.112  O9    6PY  15  
6PY  O7    O11  O  0  1  N  N  N  377.725  151.844  63.838   1.388   0.713   0.070  O7    6PY  16  
6PY  O8    O13  O  0  1  N  N  N  380.151  152.126  61.332   0.023   3.475  -1.953  O8    6PY  17  
6PY  C14   C14  C  0  1  N  N  N  374.172  156.116  61.602  -4.056  -2.671  -0.086  C14   6PY  18  
6PY  N15   N15  N  0  1  N  N  N  372.881  156.401  62.015  -5.064  -1.990  -0.727  N15   6PY  19  
6PY  N16   N16  N  0  1  N  N  N  374.462  155.948  60.351  -4.246  -3.900   0.305  N16   6PY  20  
6PY  O18   O18  O  0  1  N  N  N  377.540  148.080  66.213   4.769  -2.559   1.797  O18   6PY  21  
6PY  C19   C19  C  0  1  N  N  N  376.369  147.874  65.477   5.465  -1.372   1.411  C19   6PY  22  
6PY  N22   N22  N  0  1  N  N  N  376.587  150.262  65.214   3.424  -0.291   0.606  N22   6PY  23  
6PY  O23   O23  O  0  1  N  N  N  376.158  150.453  62.991   2.999   0.468  -1.437  O23   6PY  24  
6PY  N5    N25  N  0  1  N  N  N  375.836  153.437  61.402  -0.696  -1.124  -1.738  N5    6PY  25  
6PY  O10   O26  O  0  1  N  N  N  374.054  152.846  62.690  -0.352  -3.015  -0.629  O10   6PY  26  
6PY  C10   C27  C  0  1  N  N  N  374.578  152.828  61.641  -0.324  -2.418  -1.684  C10   6PY  27  
6PY  C1    C29  C  0  1  N  N  N  379.640  156.293  64.565  -3.061   2.241   2.129  C1    6PY  28  
6PY  O1B   O30  O  0  1  N  N  N  380.633  155.651  64.886  -2.408   3.356   2.513  O1B   6PY  29  
6PY  O1A   O31  O  0  1  N  N  N  379.573  157.468  64.841  -4.131   1.959   2.632  O1A   6PY  30  
6PY  HN41  H1   H  0  0  N  N  N  374.889  156.153  63.588  -2.137  -2.536   0.594  HN41  6PY  31  
6PY  H2    H2   H  0  1  N  N  N  378.863  147.316  67.577   5.351  -2.568   3.779  H2    6PY  32  
6PY  H1    H3   H  0  1  N  N  N  377.144  146.842  67.795   4.761  -4.124   3.146  H1    6PY  33  
6PY  H9    H4   H  0  1  N  N  N  378.109  146.129  66.459   6.370  -3.524   2.677  H9    6PY  34  
6PY  H10   H5   H  0  1  N  N  N  375.142  149.354  66.397   5.341   0.117  -0.140  H10   6PY  35  
6PY  H11   H6   H  0  1  N  N  N  374.917  149.179  64.624   4.677  -1.471  -0.592  H11   6PY  36  
6PY  H111  H7   H  0  0  N  N  N  372.910  151.734  60.845   1.205  -3.009  -3.051  H111  6PY  37  
6PY  H112  H8   H  0  0  N  N  N  373.690  152.864  59.686  -0.119  -4.185  -2.865  H112  6PY  38  
6PY  H113  H9   H  0  0  N  N  N  374.499  151.318  60.117  -0.379  -2.693  -3.800  H113  6PY  39  
6PY  H6    H10  H  0  1  N  N  N  378.485  153.961  61.471  -1.515   1.460  -1.484  H6    6PY  40  
6PY  H5    H11  H  0  1  N  N  N  376.135  153.826  63.386  -0.575  -0.813   0.336  H5    6PY  41  
6PY  H4    H12  H  0  1  N  N  N  376.733  155.949  61.309  -3.168  -0.508  -1.238  H4    6PY  42  
6PY  H3    H13  H  0  1  N  N  N  377.328  157.333  63.618  -4.089   0.062   1.225  H3    6PY  43  
6PY  H7    H14  H  0  1  N  N  N  377.630  151.667  61.813   0.835   0.936  -1.929  H7    6PY  44  
6PY  H8    H15  H  0  1  N  N  N  380.185  152.269  63.342   0.563   3.261   0.030  H8    6PY  45  
6PY  H91   H16  H  0  1  N  N  N  379.330  150.030  63.727   2.918   2.578  -0.517  H91   6PY  46  
6PY  H92   H17  H  0  1  N  N  N  380.867  150.041  62.797   2.544   2.797  -2.244  H92   6PY  47  
6PY  HO9   H18  H  0  1  N  N  N  379.342  148.553  61.994   3.482   4.771  -1.280  HO9   6PY  48  
6PY  HO8   H19  H  0  1  N  N  N  381.062  151.862  61.274   0.203   3.159  -2.849  HO8   6PY  49  
6PY  H20   H20  H  0  1  N  N  N  372.679  156.506  62.989  -4.923  -1.076  -1.018  H20   6PY  50  
6PY  H21   H21  H  0  1  N  N  N  372.151  156.501  61.339  -5.917  -2.424  -0.888  H21   6PY  51  
6PY  H22   H22  H  0  1  N  N  N  375.428  155.727  60.217  -3.535  -4.380   0.757  H22   6PY  52  
6PY  H23   H23  H  0  1  N  N  N  375.740  147.116  65.967   6.490  -1.624   1.140  H23   6PY  53  
6PY  H24   H24  H  0  1  N  N  N  376.614  147.544  64.457   5.471  -0.668   2.243  H24   6PY  54  
6PY  H25   H25  H  0  1  N  N  N  377.116  150.618  65.984   3.119  -0.422   1.518  H25   6PY  55  
6PY  HN5   H26  H  0  1  N  N  N  376.227  153.387  60.483  -0.674  -0.647  -2.582  HN5   6PY  56  
6PY  HOB1  H27  H  0  0  N  N  N  381.246  156.219  65.338  -2.831   3.900   3.191  HOB1  6PY  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6PY  N16  C14   DOUB  N  N   1  
6PY  C11  C10   SING  N  N   2  
6PY  O8   C8    SING  N  N   3  
6PY  N5   C10   SING  N  N   4  
6PY  N5   C5    SING  N  N   5  
6PY  C14  N15   SING  N  N   6  
6PY  C14  N4    SING  N  N   7  
6PY  C10  O10   DOUB  N  N   8  
6PY  O9   C9    SING  N  N   9  
6PY  C4   C5    SING  N  N  10  
6PY  C4   N4    SING  N  N  11  
6PY  C4   C3    SING  N  N  12  
6PY  C5   C6    SING  N  N  13  
6PY  C6   C7    SING  N  N  14  
6PY  C6   O6    SING  N  N  15  
6PY  C8   C7    SING  N  N  16  
6PY  C8   C9    SING  N  N  17  
6PY  C7   O7    SING  N  N  18  
6PY  O23  C21   DOUB  N  N  19  
6PY  C3   C2    DOUB  N  N  20  
6PY  O6   C2    SING  N  N  21  
6PY  C2   C1    SING  N  N  22  
6PY  O7   C21   SING  N  N  23  
6PY  C21  N22   SING  N  N  24  
6PY  C1   O1A   DOUB  N  N  25  
6PY  C1   O1B   SING  N  N  26  
6PY  N22  C20   SING  N  N  27  
6PY  C20  C19   SING  N  N  28  
6PY  C19  O18   SING  N  N  29  
6PY  O18  C17   SING  N  N  30  
6PY  N4   HN41  SING  N  N  31  
6PY  C17  H2    SING  N  N  32  
6PY  C17  H1    SING  N  N  33  
6PY  C17  H9    SING  N  N  34  
6PY  C20  H10   SING  N  N  35  
6PY  C20  H11   SING  N  N  36  
6PY  C11  H111  SING  N  N  37  
6PY  C11  H112  SING  N  N  38  
6PY  C11  H113  SING  N  N  39  
6PY  C6   H6    SING  N  N  40  
6PY  C5   H5    SING  N  N  41  
6PY  C4   H4    SING  N  N  42  
6PY  C3   H3    SING  N  N  43  
6PY  C7   H7    SING  N  N  44  
6PY  C8   H8    SING  N  N  45  
6PY  C9   H91   SING  N  N  46  
6PY  C9   H92   SING  N  N  47  
6PY  O9   HO9   SING  N  N  48  
6PY  O8   HO8   SING  N  N  49  
6PY  N15  H20   SING  N  N  50  
6PY  N15  H21   SING  N  N  51  
6PY  N16  H22   SING  N  N  52  
6PY  C19  H23   SING  N  N  53  
6PY  C19  H24   SING  N  N  54  
6PY  N22  H25   SING  N  N  55  
6PY  N5   HN5   SING  N  N  56  
6PY  O1B  HOB1  SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6PY  SMILES            ACDLabs               12.01  "N(C1C(C(C(OC(NCCOC)=O)C(CO)O)OC(=C1)C(=O)O)NC(C)=O)/C(N)=N"  
6PY  InChI             InChI                 1.03   "InChI=1S/C16H27N5O9/c1-7(23)20-11-8(21-15(17)18)5-10(14(25)26)29-13(11)12(9(24)6-22)30-16(27)19-3-4-28-2/h5,8-9,11-13,22,24H,3-4,6H2,1-2H3,(H,19,27)(H,20,23)(H,25,26)(H4,17,18,21)/t8-,9+,11+,12+,13+/m0/s1"  
6PY  InChIKey          InChI                 1.03   VAIHIAVLWLNYQQ-IINAIABHSA-N  
6PY  SMILES_CANONICAL  CACTVS                3.385  "COCCNC(=O)O[C@H]([C@H](O)CO)[C@@H]1OC(=C[C@H](NC(N)=N)[C@H]1NC(C)=O)C(O)=O"  
6PY  SMILES            CACTVS                3.385  "COCCNC(=O)O[CH]([CH](O)CO)[CH]1OC(=C[CH](NC(N)=N)[CH]1NC(C)=O)C(O)=O"  
6PY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "[H]/N=C(\N)/N[C@H]1C=C(O[C@H]([C@@H]1NC(=O)C)[C@@H]([C@@H](CO)O)OC(=O)NCCOC)C(=O)O"  
6PY  SMILES            "OpenEye OEToolkits"  2.0.4  "CC(=O)NC1C(C=C(OC1C(C(CO)O)OC(=O)NCCOC)C(=O)O)NC(=N)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6PY  "SYSTEMATIC NAME"  ACDLabs               12.01  
;5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-[(2-methoxyethyl)carbamoyl]-D-glycero-D-galacto-non-2-
enonic acid
;
  
6PY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  
;(2~{R},3~{R},4~{S})-3-acetamido-4-carbamimidamido-2-[(1~{R},2~{R})-1-(2-methoxyethylcarbamoyloxy)-2,3-bis(oxidanyl)prop
yl]-3,4-dihydro-2~{H}-pyran-6-carboxylic acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
6PY  "CARBOHYDRATE ISOMER"                  D             PDB  ?  
6PY  "CARBOHYDRATE RING"                    dihydropyran  PDB  ?  
6PY  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose        PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6PY  "Create component"          2016-05-19  PDBJ  
6PY  "Initial release"           2016-06-29  RCSB  
6PY  "Other modification"        2020-07-03  RCSB  
6PY  "Modify name"               2020-07-17  RCSB  
6PY  "Modify synonyms"           2020-07-17  RCSB  
6PY  "Modify internal type"      2020-07-17  RCSB  
6PY  "Modify linking type"       2020-07-17  RCSB  
6PY  "Modify atom id"            2020-07-17  RCSB  
6PY  "Modify component atom id"  2020-07-17  RCSB  
##
