data_5GY
# 
_chem_comp.id                                    5GY 
_chem_comp.name                                  "3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-[(1R)-2-fluoro-1-hydroxyethyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H22 F N4 O8 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2015-09-24 
_chem_comp.pdbx_modified_date                    2016-09-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        487.357 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DX6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5GY N01 N1  N 0 1 N N N 73.883 -62.384 43.033 -3.351 2.730  -2.293 N01 5GY 1  
5GY C02 C1  C 0 1 Y N N 73.407 -62.414 44.360 -3.734 2.613  -0.967 C02 5GY 2  
5GY C03 C2  C 0 1 Y N N 72.018 -62.359 44.693 -4.089 1.371  -0.438 C03 5GY 3  
5GY C04 C3  C 0 1 N N N 70.874 -62.237 43.618 -4.063 0.131  -1.294 C04 5GY 4  
5GY N05 N2  N 1 1 Y N N 71.386 -61.118 42.793 -2.948 -0.725 -0.880 N05 5GY 5  
5GY C06 C4  C 0 1 Y N N 71.913 -61.298 41.534 -3.117 -1.691 -0.042 C06 5GY 6  
5GY C07 C5  C 0 1 N N R 71.988 -62.624 40.727 -4.429 -2.053 0.605  C07 5GY 7  
5GY O08 O1  O 0 1 N N N 72.982 -62.526 39.772 -4.240 -2.206 2.013  O08 5GY 8  
5GY C09 C6  C 0 1 N N N 70.633 -62.904 40.035 -4.944 -3.366 0.013  C09 5GY 9  
5GY F10 F1  F 0 1 N N N 69.845 -63.795 40.729 -6.207 -3.652 0.542  F10 5GY 10 
5GY S11 S1  S 0 1 Y N N 72.491 -59.783 41.055 -1.636 -2.501 0.230  S11 5GY 11 
5GY C12 C7  C 0 1 Y N N 72.017 -58.913 42.470 -0.822 -1.407 -0.886 C12 5GY 12 
5GY C13 C8  C 0 1 N N N 72.242 -57.423 42.813 0.640  -1.438 -1.251 C13 5GY 13 
5GY C14 C9  C 0 1 N N N 71.439 -56.368 42.100 1.425  -0.551 -0.283 C14 5GY 14 
5GY O15 O2  O 0 1 N N N 71.741 -55.272 42.931 2.812  -0.580 -0.628 O15 5GY 15 
5GY P16 P1  P 0 1 N N N 72.869 -54.231 42.527 3.935  0.242  0.181  P16 5GY 16 
5GY O17 O3  O 0 1 N N N 72.938 -54.208 40.948 5.391  -0.126 -0.399 O17 5GY 17 
5GY P18 P2  P 0 1 N N N 71.853 -53.588 39.971 6.889  -0.001 0.178  P18 5GY 18 
5GY O19 O4  O 0 1 N N N 72.586 -52.646 39.058 7.031  1.279  0.908  O19 5GY 19 
5GY O20 O5  O 0 1 N N N 70.772 -52.823 40.724 7.181  -1.226 1.182  O20 5GY 20 
5GY O21 O6  O 0 1 N N N 71.246 -54.675 39.128 7.939  -0.044 -1.041 O21 5GY 21 
5GY O22 O7  O 0 1 N N N 72.396 -52.909 43.104 3.672  1.821  0.010  O22 5GY 22 
5GY O23 O8  O 0 1 N N N 74.226 -54.606 43.087 3.870  -0.116 1.616  O23 5GY 23 
5GY C24 C10 C 0 1 Y N N 71.445 -59.861 43.342 -1.731 -0.545 -1.352 C24 5GY 24 
5GY C25 C11 C 0 1 N N N 70.884 -59.471 44.668 -1.393 0.540  -2.342 C25 5GY 25 
5GY C26 C12 C 0 1 Y N N 71.757 -62.396 46.080 -4.464 1.306  0.890  C26 5GY 26 
5GY N27 N3  N 0 1 Y N N 72.775 -62.488 46.966 -4.475 2.417  1.613  N27 5GY 27 
5GY C28 C13 C 0 1 Y N N 74.049 -62.545 46.581 -4.135 3.575  1.084  C28 5GY 28 
5GY C29 C14 C 0 1 N N N 75.165 -62.650 47.598 -4.163 4.811  1.946  C29 5GY 29 
5GY N30 N4  N 0 1 Y N N 74.359 -62.506 45.312 -3.766 3.682  -0.176 N30 5GY 30 
5GY H1  H1  H 0 1 N N N 74.882 -62.438 43.035 -3.416 1.965  -2.886 H1  5GY 31 
5GY H2  H2  H 0 1 N N N 73.508 -63.161 42.527 -3.020 3.578  -2.630 H2  5GY 32 
5GY H3  H3  H 0 1 N N N 69.908 -61.989 44.082 -5.001 -0.412 -1.176 H3  5GY 33 
5GY H4  H4  H 0 1 N N N 70.772 -63.160 43.029 -3.935 0.413  -2.339 H4  5GY 34 
5GY H5  H5  H 0 1 N N N 72.199 -63.446 41.427 -5.155 -1.261 0.420  H5  5GY 35 
5GY H6  H6  H 0 1 N N N 73.814 -62.354 40.197 -3.605 -2.895 2.252  H6  5GY 36 
5GY H7  H7  H 0 1 N N N 70.086 -61.954 39.939 -5.016 -3.273 -1.070 H7  5GY 37 
5GY H8  H8  H 0 1 N N N 70.830 -63.317 39.034 -4.255 -4.173 0.263  H8  5GY 38 
5GY H9  H9  H 0 1 N N N 73.302 -57.206 42.615 1.008  -2.461 -1.187 H9  5GY 39 
5GY H10 H10 H 0 1 N N N 72.038 -57.308 43.888 0.768  -1.068 -2.268 H10 5GY 40 
5GY H11 H11 H 0 1 N N N 71.785 -56.212 41.068 1.056  0.473  -0.347 H11 5GY 41 
5GY H12 H12 H 0 1 N N N 70.364 -56.600 42.095 1.297  -0.921 0.735  H12 5GY 42 
5GY H13 H13 H 0 1 N N N 70.787 -51.911 40.460 7.106  -2.098 0.770  H13 5GY 43 
5GY H14 H14 H 0 1 N N N 71.460 -54.525 38.215 8.864  0.027  -0.766 H14 5GY 44 
5GY H15 H15 H 0 1 N N N 73.049 -52.575 43.707 3.700  2.127  -0.907 H15 5GY 45 
5GY H16 H16 H 0 1 N N N 69.830 -59.180 44.549 -1.188 1.468  -1.809 H16 5GY 46 
5GY H17 H17 H 0 1 N N N 70.953 -60.323 45.360 -0.512 0.248  -2.914 H17 5GY 47 
5GY H18 H18 H 0 1 N N N 71.455 -58.623 45.073 -2.234 0.688  -3.020 H18 5GY 48 
5GY H19 H19 H 0 1 N N N 70.738 -62.351 46.436 -4.745 0.363  1.333  H19 5GY 49 
5GY H20 H20 H 0 1 N N N 76.134 -62.680 47.078 -3.191 4.944  2.422  H20 5GY 50 
5GY H21 H21 H 0 1 N N N 75.134 -61.777 48.267 -4.386 5.680  1.328  H21 5GY 51 
5GY H22 H22 H 0 1 N N N 75.038 -63.569 48.188 -4.931 4.702  2.712  H22 5GY 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5GY O19 P18 DOUB N N 1  
5GY O21 P18 SING N N 2  
5GY O08 C07 SING N N 3  
5GY P18 O20 SING N N 4  
5GY P18 O17 SING N N 5  
5GY C09 C07 SING N N 6  
5GY C09 F10 SING N N 7  
5GY C07 C06 SING N N 8  
5GY O17 P16 SING N N 9  
5GY S11 C06 SING Y N 10 
5GY S11 C12 SING Y N 11 
5GY C06 N05 DOUB Y N 12 
5GY C14 C13 SING N N 13 
5GY C14 O15 SING N N 14 
5GY C12 C13 SING N N 15 
5GY C12 C24 DOUB Y N 16 
5GY P16 O15 SING N N 17 
5GY P16 O23 DOUB N N 18 
5GY P16 O22 SING N N 19 
5GY N05 C24 SING Y N 20 
5GY N05 C04 SING N N 21 
5GY N01 C02 SING N N 22 
5GY C24 C25 SING N N 23 
5GY C04 C03 SING N N 24 
5GY C02 C03 DOUB Y N 25 
5GY C02 N30 SING Y N 26 
5GY C03 C26 SING Y N 27 
5GY N30 C28 DOUB Y N 28 
5GY C26 N27 DOUB Y N 29 
5GY C28 N27 SING Y N 30 
5GY C28 C29 SING N N 31 
5GY N01 H1  SING N N 32 
5GY N01 H2  SING N N 33 
5GY C04 H3  SING N N 34 
5GY C04 H4  SING N N 35 
5GY C07 H5  SING N N 36 
5GY O08 H6  SING N N 37 
5GY C09 H7  SING N N 38 
5GY C09 H8  SING N N 39 
5GY C13 H9  SING N N 40 
5GY C13 H10 SING N N 41 
5GY C14 H11 SING N N 42 
5GY C14 H12 SING N N 43 
5GY O20 H13 SING N N 44 
5GY O21 H14 SING N N 45 
5GY O22 H15 SING N N 46 
5GY C25 H16 SING N N 47 
5GY C25 H17 SING N N 48 
5GY C25 H18 SING N N 49 
5GY C26 H19 SING N N 50 
5GY C29 H20 SING N N 51 
5GY C29 H21 SING N N 52 
5GY C29 H22 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5GY SMILES           ACDLabs              12.01 "Nc1c(cnc(C)n1)C[n+]2c(c(sc2C(O)CF)CCOP(=O)(O)OP(O)(=O)O)C"                                                                                                                           
5GY InChI            InChI                1.03  "InChI=1S/C14H21FN4O8P2S/c1-8-12(3-4-26-29(24,25)27-28(21,22)23)30-14(11(20)5-15)19(8)7-10-6-17-9(2)18-13(10)16/h6,11,20H,3-5,7H2,1-2H3,(H4-,16,17,18,21,22,23,24,25)/p+1/t11-/m1/s1" 
5GY InChIKey         InChI                1.03  RCUDZGRKYWDHTO-LLVKDONJSA-O                                                                                                                                                           
5GY SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(C[n+]2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[C@H](O)CF)c(N)n1"                                                                                                                   
5GY SMILES           CACTVS               3.385 "Cc1ncc(C[n+]2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[CH](O)CF)c(N)n1"                                                                                                                    
5GY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)[C@@H](CF)O)CCOP(=O)(O)OP(=O)(O)O"                                                                                                                        
5GY SMILES           "OpenEye OEToolkits" 2.0.4 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)C(CF)O)CCOP(=O)(O)OP(=O)(O)O"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5GY "SYSTEMATIC NAME" ACDLabs              12.01 "3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-[(1R)-2-fluoro-1-hydroxyethyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium" 
5GY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-2-[(1~{R})-2-fluoranyl-1-oxidanyl-ethyl]-4-methyl-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5GY "Create component" 2015-09-24 RCSB 
5GY "Modify formula"   2016-02-07 RCSB 
5GY "Initial release"  2016-09-28 RCSB 
# 
