data_5CY
#

_chem_comp.id                                   5CY
_chem_comp.name                                 
;1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y
l}-3,3-dimethyl-3H-indolium
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C31 H39 N2 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N,N'-(dipropyl)-tetramethylindodicarbocyanine"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2013-04-17
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       471.654
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5CY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4JRP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5CY  N1   N1   N  0  1  N  N  N  39.466  18.488  11.968  -4.902   0.405  -0.499  N1   5CY   1  
5CY  C1   C1   C  0  1  N  N  N  46.194  22.038  16.689   3.135  -1.880   1.537  C1   5CY   2  
5CY  O1   O1   O  0  1  N  N  N  40.451  14.784  12.721  -5.698   4.985   0.924  O1   5CY   3  
5CY  C10  C10  C  0  1  N  N  N  40.095  18.967  13.064  -3.648  -0.107  -0.307  C10  5CY   4  
5CY  C11  C11  C  0  1  N  N  N  40.076  17.825  10.794  -5.170   1.772  -0.951  C11  5CY   5  
5CY  C12  C12  C  0  1  N  N  N  39.878  16.313  10.890  -5.298   2.695   0.262  C12  5CY   6  
5CY  C13  C13  C  0  1  N  N  N  40.986  15.632  11.696  -5.578   4.123  -0.210  C13  5CY   7  
5CY  C14  C14  C  0  1  Y  N  N  38.158  18.734  12.124  -5.893  -0.534  -0.219  C14  5CY   8  
5CY  C15  C15  C  0  1  Y  N  N  37.049  18.468  11.320  -7.283  -0.432  -0.282  C15  5CY   9  
5CY  C16  C16  C  0  1  Y  N  N  35.785  18.847  11.757  -8.072  -1.514   0.048  C16  5CY  10  
5CY  C17  C17  C  0  1  Y  N  N  35.628  19.485  12.991  -7.493  -2.706   0.445  C17  5CY  11  
5CY  C18  C18  C  0  1  Y  N  N  36.739  19.739  13.788  -6.115  -2.814   0.511  C18  5CY  12  
5CY  C19  C19  C  0  1  Y  N  N  38.021  19.376  13.353  -5.324  -1.736   0.181  C19  5CY  13  
5CY  O2   O2   O  0  1  N  N  N  48.264  16.656  14.450   6.639   4.570   0.957  O2   5CY  14  
5CY  C2   C2   C  0  1  N  N  N  46.899  20.684  16.873   3.697  -1.626   0.137  C2   5CY  15  
5CY  N2   N2   N  1  1  N  N  N  48.532  19.891  15.295   4.731   0.322  -0.438  N2   5CY  16  
5CY  C20  C20  C  0  1  N  N  N  39.255  19.617  14.194  -3.826  -1.539   0.150  C20  5CY  17  
5CY  C21  C21  C  0  1  N  N  N  40.091  20.883  13.998  -3.232  -1.733   1.547  C21  5CY  18  
5CY  C22  C22  C  0  1  N  N  N  39.636  18.456  15.128  -3.179  -2.504  -0.846  C22  5CY  19  
5CY  C23  C23  C  0  1  N  N  N  49.109  19.302  14.077   4.972   1.714  -0.826  C23  5CY  20  
5CY  C24  C24  C  0  1  N  N  N  50.104  18.183  14.380   5.703   2.439   0.305  C24  5CY  21  
5CY  C25  C25  C  0  1  N  N  N  49.419  17.086  15.176   5.956   3.893  -0.100  C25  5CY  22  
5CY  C26  C26  C  0  1  Y  N  N  49.229  20.443  16.342   5.730  -0.579  -0.241  C26  5CY  23  
5CY  C27  C27  C  0  1  Y  N  N  50.600  20.594  16.608   7.122  -0.449  -0.341  C27  5CY  24  
5CY  C28  C28  C  0  1  Y  N  N  51.039  21.202  17.791   7.935  -1.532  -0.086  C28  5CY  25  
5CY  C29  C29  C  0  1  Y  N  N  50.111  21.660  18.735   7.389  -2.753   0.269  C29  5CY  26  
5CY  C3   C3   C  0  1  N  N  N  46.136  19.798  17.867   3.021  -2.540  -0.888  C3   5CY  27  
5CY  C30  C30  C  0  1  Y  N  N  48.745  21.514  18.484   6.014  -2.894   0.371  C30  5CY  28  
5CY  C31  C31  C  0  1  Y  N  N  48.311  20.906  17.293   5.196  -1.822   0.120  C31  5CY  29  
5CY  C4   C4   C  0  1  N  N  N  47.205  20.002  15.563   3.533  -0.170  -0.249  C4   5CY  30  
5CY  C5   C5   C  0  1  N  N  N  46.165  19.516  14.592   2.320   0.523  -0.380  C5   5CY  31  
5CY  C6   C6   C  0  1  N  N  N  44.850  19.466  14.855   1.137  -0.132  -0.195  C6   5CY  32  
5CY  C7   C7   C  0  1  N  N  N  43.883  19.019  13.849  -0.076   0.531  -0.434  C7   5CY  33  
5CY  C8   C8   C  0  1  N  N  N  42.570  19.163  14.063  -1.258  -0.123  -0.250  C8   5CY  34  
5CY  C9   C9   C  0  1  N  N  N  41.594  18.753  13.047  -2.475   0.541  -0.490  C9   5CY  35  
5CY  H1   H1   H  0  1  N  N  N  45.997  22.486  17.674   3.609  -1.202   2.247  H1   5CY  36  
5CY  H2   H2   H  0  1  N  N  N  46.838  22.710  16.103   2.059  -1.709   1.533  H2   5CY  37  
5CY  H3   H3   H  0  1  N  N  N  45.242  21.887  16.158   3.338  -2.911   1.829  H3   5CY  38  
5CY  H4   H4   H  0  1  N  N  N  41.163  14.378  13.201  -5.876   5.908   0.699  H4   5CY  39  
5CY  H5   H5   H  0  1  N  N  N  41.152  18.051  10.766  -4.350   2.114  -1.583  H5   5CY  40  
5CY  H6   H6   H  0  1  N  N  N  39.599  18.198   9.876  -6.099   1.791  -1.521  H6   5CY  41  
5CY  H7   H7   H  0  1  N  N  N  38.912  16.113  11.377  -6.119   2.353   0.893  H7   5CY  42  
5CY  H8   H8   H  0  1  N  N  N  39.870  15.892   9.874  -4.369   2.676   0.832  H8   5CY  43  
5CY  H9   H9   H  0  1  N  N  N  41.600  15.024  11.015  -6.507   4.141  -0.780  H9   5CY  44  
5CY  H10  H10  H  0  1  N  N  N  41.613  16.405  12.164  -4.758   4.464  -0.841  H10  5CY  45  
5CY  H11  H11  H  0  1  N  N  N  37.171  17.973  10.368  -7.742   0.495  -0.591  H11  5CY  46  
5CY  H12  H12  H  0  1  N  N  N  34.921  18.648  11.141  -9.147  -1.430  -0.002  H12  5CY  47  
5CY  H13  H13  H  0  1  N  N  N  34.644  19.780  13.325  -8.115  -3.550   0.704  H13  5CY  48  
5CY  H14  H14  H  0  1  N  N  N  36.613  20.219  14.747  -5.660  -3.743   0.821  H14  5CY  49  
5CY  H15  H15  H  0  1  N  N  N  47.823  15.968  14.935   6.832   5.499   0.769  H15  5CY  50  
5CY  H16  H16  H  0  1  N  N  N  39.754  21.658  14.702  -3.736  -1.071   2.251  H16  5CY  51  
5CY  H17  H17  H  0  1  N  N  N  41.151  20.655  14.185  -3.369  -2.769   1.860  H17  5CY  52  
5CY  H18  H18  H  0  1  N  N  N  39.970  21.246  12.967  -2.168  -1.498   1.526  H18  5CY  53  
5CY  H19  H19  H  0  1  N  N  N  39.167  18.607  16.112  -2.114  -2.286  -0.923  H19  5CY  54  
5CY  H20  H20  H  0  1  N  N  N  39.284  17.508  14.696  -3.316  -3.529  -0.501  H20  5CY  55  
5CY  H21  H21  H  0  1  N  N  N  40.729  18.423  15.244  -3.646  -2.384  -1.823  H21  5CY  56  
5CY  H22  H22  H  0  1  N  N  N  49.628  20.093  13.515   5.583   1.739  -1.728  H22  5CY  57  
5CY  H23  H23  H  0  1  N  N  N  48.293  18.892  13.464   4.020   2.208  -1.019  H23  5CY  58  
5CY  H24  H24  H  0  1  N  N  N  50.483  17.766  13.435   5.092   2.414   1.207  H24  5CY  59  
5CY  H25  H25  H  0  1  N  N  N  50.943  18.589  14.965   6.656   1.945   0.498  H25  5CY  60  
5CY  H26  H26  H  0  1  N  N  N  50.109  16.240  15.312   5.003   4.387  -0.293  H26  5CY  61  
5CY  H27  H27  H  0  1  N  N  N  49.116  17.474  16.160   6.567   3.918  -1.002  H27  5CY  62  
5CY  H28  H28  H  0  1  N  N  N  51.325  20.237  15.891   7.558   0.500  -0.618  H28  5CY  63  
5CY  H29  H29  H  0  1  N  N  N  52.097  21.318  17.976   9.007  -1.427  -0.164  H29  5CY  64  
5CY  H30  H30  H  0  1  N  N  N  50.449  22.123  19.650   8.035  -3.596   0.467  H30  5CY  65  
5CY  H31  H31  H  0  1  N  N  N  45.950  20.361  18.793   1.951  -2.336  -0.906  H31  5CY  66  
5CY  H32  H32  H  0  1  N  N  N  45.176  19.493  17.425   3.443  -2.352  -1.875  H32  5CY  67  
5CY  H33  H33  H  0  1  N  N  N  46.735  18.904  18.095   3.189  -3.581  -0.613  H33  5CY  68  
5CY  H34  H34  H  0  1  N  N  N  48.022  21.868  19.204   5.587  -3.847   0.647  H34  5CY  69  
5CY  H36  H36  H  0  1  N  N  N  46.498  19.186  13.619   2.323   1.574  -0.627  H36  5CY  70  
5CY  H37  H37  H  0  1  N  N  N  44.496  19.762  15.831   1.134  -1.160   0.136  H37  5CY  71  
5CY  H38  H38  H  0  1  N  N  N  44.232  18.571  12.930  -0.073   1.559  -0.765  H38  5CY  72  
5CY  H39  H39  H  0  1  N  N  N  42.225  19.586  14.995  -1.261  -1.151   0.081  H39  5CY  73  
5CY  H40  H40  H  0  1  N  N  N  41.992  18.238  12.185  -2.473   1.569  -0.821  H40  5CY  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5CY  C11  C12  SING  N  N   1  
5CY  C11  N1   SING  N  N   2  
5CY  C12  C13  SING  N  N   3  
5CY  C15  C16  DOUB  Y  N   4  
5CY  C15  C14  SING  Y  N   5  
5CY  C13  O1   SING  N  N   6  
5CY  C16  C17  SING  Y  N   7  
5CY  N1   C14  SING  N  N   8  
5CY  N1   C10  SING  N  N   9  
5CY  C14  C19  DOUB  Y  N  10  
5CY  C17  C18  DOUB  Y  N  11  
5CY  C9   C10  DOUB  N  E  12  
5CY  C9   C8   SING  N  N  13  
5CY  C10  C20  SING  N  N  14  
5CY  C19  C18  SING  Y  N  15  
5CY  C19  C20  SING  N  N  16  
5CY  C7   C8   DOUB  N  E  17  
5CY  C7   C6   SING  N  N  18  
5CY  C21  C20  SING  N  N  19  
5CY  C23  C24  SING  N  N  20  
5CY  C23  N2   SING  N  N  21  
5CY  C20  C22  SING  N  N  22  
5CY  C24  C25  SING  N  N  23  
5CY  O2   C25  SING  N  N  24  
5CY  C5   C6   DOUB  N  E  25  
5CY  C5   C4   SING  N  N  26  
5CY  N2   C4   DOUB  N  N  27  
5CY  N2   C26  SING  N  N  28  
5CY  C4   C2   SING  N  N  29  
5CY  C26  C27  DOUB  Y  N  30  
5CY  C26  C31  SING  Y  N  31  
5CY  C27  C28  SING  Y  N  32  
5CY  C1   C2   SING  N  N  33  
5CY  C2   C31  SING  N  N  34  
5CY  C2   C3   SING  N  N  35  
5CY  C31  C30  DOUB  Y  N  36  
5CY  C28  C29  DOUB  Y  N  37  
5CY  C30  C29  SING  Y  N  38  
5CY  C1   H1   SING  N  N  39  
5CY  C1   H2   SING  N  N  40  
5CY  C1   H3   SING  N  N  41  
5CY  O1   H4   SING  N  N  42  
5CY  C11  H5   SING  N  N  43  
5CY  C11  H6   SING  N  N  44  
5CY  C12  H7   SING  N  N  45  
5CY  C12  H8   SING  N  N  46  
5CY  C13  H9   SING  N  N  47  
5CY  C13  H10  SING  N  N  48  
5CY  C15  H11  SING  N  N  49  
5CY  C16  H12  SING  N  N  50  
5CY  C17  H13  SING  N  N  51  
5CY  C18  H14  SING  N  N  52  
5CY  O2   H15  SING  N  N  53  
5CY  C21  H16  SING  N  N  54  
5CY  C21  H17  SING  N  N  55  
5CY  C21  H18  SING  N  N  56  
5CY  C22  H19  SING  N  N  57  
5CY  C22  H20  SING  N  N  58  
5CY  C22  H21  SING  N  N  59  
5CY  C23  H22  SING  N  N  60  
5CY  C23  H23  SING  N  N  61  
5CY  C24  H24  SING  N  N  62  
5CY  C24  H25  SING  N  N  63  
5CY  C25  H26  SING  N  N  64  
5CY  C25  H27  SING  N  N  65  
5CY  C27  H28  SING  N  N  66  
5CY  C28  H29  SING  N  N  67  
5CY  C29  H30  SING  N  N  68  
5CY  C3   H31  SING  N  N  69  
5CY  C3   H32  SING  N  N  70  
5CY  C3   H33  SING  N  N  71  
5CY  C30  H34  SING  N  N  72  
5CY  C5   H36  SING  N  N  73  
5CY  C6   H37  SING  N  N  74  
5CY  C7   H38  SING  N  N  75  
5CY  C8   H39  SING  N  N  76  
5CY  C9   H40  SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5CY  SMILES            ACDLabs               12.01  "OCCC[N+]=2c1ccccc1C(C=2\C=C\C=C\C=C4\N(c3ccccc3C4(C)C)CCCO)(C)C"  
5CY  InChI             InChI                 1.03   "InChI=1S/C31H39N2O2/c1-30(2)24-14-8-10-16-26(24)32(20-12-22-34)28(30)18-6-5-7-19-29-31(3,4)25-15-9-11-17-27(25)33(29)21-13-23-35/h5-11,14-19,34-35H,12-13,20-23H2,1-4H3/q+1"  
5CY  InChIKey          InChI                 1.03   VFBDPICHYNKCQJ-UHFFFAOYSA-N  
5CY  SMILES_CANONICAL  CACTVS                3.370  "CC1(C)C(=C/C=C/C=C/C2=[N+](CCCO)c3ccccc3C2(C)C)\N(CCCO)c4ccccc14"  
5CY  SMILES            CACTVS                3.370  "CC1(C)C(=CC=CC=CC2=[N+](CCCO)c3ccccc3C2(C)C)N(CCCO)c4ccccc14"  
5CY  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CC1(c2ccccc2[N+](=C1/C=C/C=C/C=C/3\C(c4ccccc4N3CCCO)(C)C)CCCO)C"  
5CY  SMILES            "OpenEye OEToolkits"  1.7.6  "CC1(c2ccccc2[N+](=C1C=CC=CC=C3C(c4ccccc4N3CCCO)(C)C)CCCO)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5CY  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-yl}-3,3-dimethyl-3H-indolium"  
5CY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "3-[(2E)-2-[(2E,4E)-5-[3,3-dimethyl-1-(3-oxidanylpropyl)indol-1-ium-2-yl]penta-2,4-dienylidene]-3,3-dimethyl-indol-1-yl]propan-1-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5CY  "Create component"               2008-01-17  RCSB  
5CY  "Modify aromatic_flag"           2011-06-04  RCSB  
5CY  "Modify descriptor"              2011-06-04  RCSB  
5CY  "Modify model coordinates code"  2013-04-17  RCSB  
5CY  "Other modification"             2013-04-19  RCSB  
5CY  "Modify synonyms"                2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5CY
_pdbx_chem_comp_synonyms.name        "N,N'-(dipropyl)-tetramethylindodicarbocyanine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
