data_4DY
# 
_chem_comp.id                                    4DY 
_chem_comp.name                                  "(6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H27 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Capsaicin; 8-Methyl-N-vanillyl-trans-6-nonenamide; NGX-4010" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-04-30 
_chem_comp.pdbx_modified_date                    2020-05-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        305.412 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4DY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2N27 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4DY C1  C1  C 0 1 Y N N -7.807  -3.155 4.670 3.669   -0.272 0.785  C1  4DY 1  
4DY C2  C2  C 0 1 Y N N -8.234  -4.043 5.655 4.400   0.639  0.045  C2  4DY 2  
4DY C3  C3  C 0 1 Y N N -9.428  -4.730 5.483 5.565   0.240  -0.589 C3  4DY 3  
4DY C4  C4  C 0 1 Y N N -10.193 -4.535 4.338 5.996   -1.079 -0.480 C4  4DY 4  
4DY C5  C5  C 0 1 Y N N -9.767  -3.649 3.353 5.259   -1.987 0.262  C5  4DY 5  
4DY C40 C40 C 0 1 N N N 4.908   -3.682 1.608 -8.465  -1.810 -1.250 C40 4DY 6  
4DY C38 C38 C 0 1 N N N 3.749   -3.467 2.582 -8.280  -0.317 -0.969 C38 4DY 7  
4DY C44 C44 C 0 1 N N N 4.170   -3.912 3.982 -9.547  0.240  -0.317 C44 4DY 8  
4DY C37 C37 C 0 1 N N N 2.540   -4.285 2.130 -7.109  -0.122 -0.040 C37 4DY 9  
4DY C36 C36 C 0 1 N N N 1.160   -4.008 2.730 -6.082  0.595  -0.423 C36 4DY 10 
4DY C33 C33 C 0 1 N N N -0.056  -4.807 2.260 -4.911  0.790  0.506  C33 4DY 11 
4DY C30 C30 C 0 1 N N N -1.220  -3.854 1.979 -3.625  0.347  -0.194 C30 4DY 12 
4DY C27 C27 C 0 1 N N N -2.195  -3.879 3.157 -2.437  0.546  0.749  C27 4DY 13 
4DY C24 C24 C 0 1 N N N -3.531  -3.272 2.725 -1.150  0.103  0.049  C24 4DY 14 
4DY C22 C22 C 0 1 N N N -4.356  -2.919 3.963 0.020   0.298  0.978  C22 4DY 15 
4DY O23 O23 O 0 1 N N N -3.817  -2.728 5.052 -0.157  0.747  2.090  O23 4DY 16 
4DY N21 N21 N 0 1 N N N -5.680  -2.839 3.761 1.264   -0.026 0.572  N21 4DY 17 
4DY C17 C17 C 0 1 N N N -6.613  -2.466 4.831 2.402   0.164  1.475  C17 4DY 18 
4DY C6  C6  C 0 1 Y N N -8.571  -2.960 3.523 4.094   -1.583 0.889  C6  4DY 19 
4DY O10 O10 O 0 1 N N N -11.353 -5.238 4.237 7.139   -1.475 -1.102 O10 4DY 20 
4DY O12 O12 O 0 1 N N N -9.902  -5.616 6.399 6.285   1.134  -1.318 O12 4DY 21 
4DY C13 C13 C 0 1 N N N -10.636 -4.918 7.410 5.782   2.470  -1.386 C13 4DY 22 
4DY H2  H2  H 0 1 N N N -7.641  -4.196 6.545 4.063   1.662  -0.038 H2  4DY 23 
4DY H5  H5  H 0 1 N N N -10.361 -3.498 2.464 5.589   -3.012 0.345  H5  4DY 24 
4DY H40 H40 H 0 1 N N N 5.777   -3.092 1.935 -8.652  -2.335 -0.313 H40 4DY 25 
4DY H6T H6T H 0 1 N N N 5.176   -4.749 1.587 -9.311  -1.951 -1.922 H6T 4DY 26 
4DY H6S H6S H 0 1 N N N 4.605   -3.360 0.601 -7.562  -2.207 -1.714 H6S 4DY 27 
4DY H38 H38 H 0 1 N N N 3.482   -2.400 2.602 -8.092  0.208  -1.906 H38 4DY 28 
4DY H6U H6U H 0 1 N N N 3.336   -3.757 4.683 -9.734  -0.285 0.619  H6U 4DY 29 
4DY H6V H6V H 0 1 N N N 4.439   -4.978 3.962 -9.415  1.303  -0.117 H6V 4DY 30 
4DY H44 H44 H 0 1 N N N 5.038   -3.321 4.309 -10.393 0.099  -0.989 H44 4DY 31 
4DY H37 H37 H 0 1 N N N 2.660   -5.059 1.387 -7.117  -0.573 0.941  H37 4DY 32 
4DY H36 H36 H 0 1 N N N 1.045   -3.247 3.487 -6.073  1.046  -1.404 H36 4DY 33 
4DY H33 H33 H 0 1 N N N -0.349  -5.522 3.043 -4.834  1.843  0.777  H33 4DY 34 
4DY H6R H6R H 0 1 N N N 0.199   -5.354 1.341 -5.058  0.193  1.406  H6R 4DY 35 
4DY H6Q H6Q H 0 1 N N N -0.834  -2.833 1.844 -3.702  -0.706 -0.465 H6Q 4DY 36 
4DY H30 H30 H 0 1 N N N -1.742  -4.172 1.064 -3.478  0.944  -1.095 H30 4DY 37 
4DY H27 H27 H 0 1 N N N -2.352  -4.918 3.481 -2.359  1.599  1.019  H27 4DY 38 
4DY H6P H6P H 0 1 N N N -1.779  -3.294 3.990 -2.584  -0.051 1.649  H6P 4DY 39 
4DY H6O H6O H 0 1 N N N -3.346  -2.362 2.136 -1.228  -0.950 -0.222 H6O 4DY 40 
4DY H24 H24 H 0 1 N N N -4.083  -4.000 2.112 -1.003  0.700  -0.852 H24 4DY 41 
4DY H21 H21 H 0 1 N N N -6.043  -3.040 2.851 1.406   -0.385 -0.318 H21 4DY 42 
4DY H6N H6N H 0 1 N N N -6.172  -2.721 5.806 2.255   -0.433 2.375  H6N 4DY 43 
4DY H17 H17 H 0 1 N N N -6.806  -1.384 4.787 2.479   1.217  1.745  H17 4DY 44 
4DY H6  H6  H 0 1 N N N -8.234  -2.271 2.762 3.520   -2.292 1.467  H6  4DY 45 
4DY H10 H10 H 0 1 N N N -11.462 -5.783 5.008 7.935   -1.378 -0.561 H10 4DY 46 
4DY H6M H6M H 0 1 N N N -11.018 -5.637 8.149 4.788   2.461  -1.833 H6M 4DY 47 
4DY H6L H6L H 0 1 N N N -9.975  -4.195 7.910 5.725   2.889  -0.381 H6L 4DY 48 
4DY H13 H13 H 0 1 N N N -11.480 -4.384 6.948 6.449   3.079  -1.996 H13 4DY 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4DY C40 C38 SING N N 1  
4DY C30 C33 SING N N 2  
4DY C30 C27 SING N N 3  
4DY C37 C38 SING N N 4  
4DY C37 C36 DOUB N E 5  
4DY C33 C36 SING N N 6  
4DY C38 C44 SING N N 7  
4DY C24 C27 SING N N 8  
4DY C24 C22 SING N N 9  
4DY C5  C6  DOUB Y N 10 
4DY C5  C4  SING Y N 11 
4DY C6  C1  SING Y N 12 
4DY N21 C22 SING N N 13 
4DY N21 C17 SING N N 14 
4DY C22 O23 DOUB N N 15 
4DY O10 C4  SING N N 16 
4DY C4  C3  DOUB Y N 17 
4DY C1  C17 SING N N 18 
4DY C1  C2  DOUB Y N 19 
4DY C3  C2  SING Y N 20 
4DY C3  O12 SING N N 21 
4DY O12 C13 SING N N 22 
4DY C2  H2  SING N N 23 
4DY C5  H5  SING N N 24 
4DY C40 H40 SING N N 25 
4DY C40 H6T SING N N 26 
4DY C40 H6S SING N N 27 
4DY C38 H38 SING N N 28 
4DY C44 H6U SING N N 29 
4DY C44 H6V SING N N 30 
4DY C44 H44 SING N N 31 
4DY C37 H37 SING N N 32 
4DY C36 H36 SING N N 33 
4DY C33 H33 SING N N 34 
4DY C33 H6R SING N N 35 
4DY C30 H6Q SING N N 36 
4DY C30 H30 SING N N 37 
4DY C27 H27 SING N N 38 
4DY C27 H6P SING N N 39 
4DY C24 H6O SING N N 40 
4DY C24 H24 SING N N 41 
4DY N21 H21 SING N N 42 
4DY C17 H6N SING N N 43 
4DY C17 H17 SING N N 44 
4DY C6  H6  SING N N 45 
4DY O10 H10 SING N N 46 
4DY C13 H6M SING N N 47 
4DY C13 H6L SING N N 48 
4DY C13 H13 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4DY SMILES           ACDLabs              12.01 "c1(CNC(CCCC[C@H]=CC(C)C)=O)cc(OC)c(cc1)O"                                                                                             
4DY InChI            InChI                1.03  "InChI=1S/C18H27NO3/c1-14(2)8-6-4-5-7-9-18(21)19-13-15-10-11-16(20)17(12-15)22-3/h6,8,10-12,14,20H,4-5,7,9,13H2,1-3H3,(H,19,21)/b8-6+" 
4DY InChIKey         InChI                1.03  YKPUWZUDDOIDPM-SOFGYWHQSA-N                                                                                                            
4DY SMILES_CANONICAL CACTVS               3.385 "COc1cc(CNC(=O)CCCC/C=C/C(C)C)ccc1O"                                                                                                   
4DY SMILES           CACTVS               3.385 "COc1cc(CNC(=O)CCCCC=CC(C)C)ccc1O"                                                                                                     
4DY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)/C=C/CCCCC(=O)NCc1ccc(c(c1)OC)O"                                                                                                 
4DY SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)C=CCCCCC(=O)NCc1ccc(c(c1)OC)O"                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4DY "SYSTEMATIC NAME" ACDLabs              12.01 "(6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide"           
4DY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(E)-N-[(3-methoxy-4-oxidanyl-phenyl)methyl]-8-methyl-non-6-enamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4DY "Create component" 2015-04-30 RCSB 
4DY "Modify synonyms"  2015-05-05 RCSB 
4DY "Modify synonyms"  2015-05-20 RCSB 
4DY "Initial release"  2016-07-06 RCSB 
4DY "Modify synonyms"  2020-05-26 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 4DY Capsaicin                              ? ? 
2 4DY 8-Methyl-N-vanillyl-trans-6-nonenamide ? ? 
3 4DY NGX-4010                               ? ? 
# 
