data_3JY
# 
_chem_comp.id                                    3JY 
_chem_comp.name                                  "[(1R)-2-methoxy-1-{[(1S,3R)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclopentyl]oxy}-2-oxoethyl]phosphonic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H19 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-08-28 
_chem_comp.pdbx_modified_date                    2015-03-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        362.272 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3JY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4R5P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3JY N21 N21 N 0 1 N N N -28.781 -49.937 -5.547  -4.487 1.052  0.983  N21 3JY 1  
3JY N6  N6  N 0 1 N N N -26.994 -48.516 -6.002  -3.118 -0.448 -0.183 N6  3JY 2  
3JY C2  C2  C 0 1 N N N -29.542 -48.903 -5.115  -5.500 0.822  0.124  C2  3JY 3  
3JY C22 C22 C 0 1 N N N -27.529 -49.743 -5.983  -3.309 0.420  0.827  C22 3JY 4  
3JY C7  C7  C 0 1 N N R -25.613 -48.328 -6.514  -1.825 -1.121 -0.327 C7  3JY 5  
3JY C20 C20 C 0 1 N N N -25.616 -47.265 -7.579  -0.682 -0.081 -0.430 C20 3JY 6  
3JY C10 C10 C 0 1 N N S -24.504 -46.306 -7.265  0.557  -0.888 0.032  C10 3JY 7  
3JY C12 C12 C 0 1 N N R -25.930 -44.335 -7.170  2.642  0.210  -0.408 C12 3JY 8  
3JY C13 C13 C 0 1 N N N -25.883 -43.201 -6.220  3.195  1.599  -0.217 C13 3JY 9  
3JY C9  C9  C 0 1 N N N -24.216 -46.488 -5.805  0.025  -1.778 1.174  C9  3JY 10 
3JY C8  C8  C 0 1 N N N -24.570 -47.905 -5.476  -1.490 -1.926 0.946  C8  3JY 11 
3JY C5  C5  C 0 1 N N N -27.709 -47.447 -5.588  -4.125 -0.718 -1.069 C5  3JY 12 
3JY C3  C3  C 0 1 N N N -29.014 -47.617 -5.123  -5.315 -0.094 -0.939 C3  3JY 13 
3JY C4  C4  C 0 1 N N N -29.844 -46.464 -4.645  -6.436 -0.379 -1.906 C4  3JY 14 
3JY O1  O1  O 0 1 N N N -30.801 -49.100 -4.676  -6.565 1.397  0.262  O1  3JY 15 
3JY O11 O11 O 0 1 N N N -24.773 -45.014 -7.522  1.574  -0.009 0.516  O11 3JY 16 
3JY O18 O18 O 0 1 N N N -25.266 -43.930 -9.765  4.735  -0.628 1.084  O18 3JY 17 
3JY O19 O19 O 0 1 N N N -27.689 -44.307 -9.338  3.302  -2.466 0.115  O19 3JY 18 
3JY O17 O17 O 0 1 N N N -26.595 -42.119 -8.634  4.938  -1.066 -1.394 O17 3JY 19 
3JY O14 O14 O 0 1 N N N -25.194 -42.225 -6.381  2.500  2.466  0.256  O14 3JY 20 
3JY O15 O15 O 0 1 N N N -26.586 -43.229 -5.243  4.460  1.872  -0.573 O15 3JY 21 
3JY O23 O23 O 0 1 N N N -26.890 -50.667 -6.351  -2.404 0.638  1.609  O23 3JY 22 
3JY P16 P16 P 0 1 N N N -26.380 -43.641 -8.816  3.960  -1.015 -0.116 P16 3JY 23 
3JY H1  H1  H 0 1 N N N -29.161 -50.862 -5.540  -4.606 1.679  1.714  H1  3JY 24 
3JY H2  H2  H 0 1 N N N -25.277 -49.272 -6.968  -1.830 -1.773 -1.200 H2  3JY 25 
3JY H3  H3  H 0 1 N N N -26.580 -46.735 -7.578  -0.560 0.259  -1.459 H3  3JY 26 
3JY H4  H4  H 0 1 N N N -25.450 -47.722 -8.566  -0.864 0.762  0.237  H4  3JY 27 
3JY H5  H5  H 0 1 N N N -23.614 -46.625 -7.828  0.939  -1.502 -0.784 H5  3JY 28 
3JY H6  H6  H 0 1 N N N -26.741 -45.027 -6.898  2.268  0.105  -1.427 H6  3JY 29 
3JY H7  H7  H 0 1 N N N -23.150 -46.305 -5.602  0.505  -2.756 1.140  H7  3JY 30 
3JY H8  H8  H 0 1 N N N -24.827 -45.795 -5.208  0.212  -1.302 2.136  H8  3JY 31 
3JY H9  H9  H 0 1 N N N -24.992 -47.969 -4.462  -2.037 -1.523 1.798  H9  3JY 32 
3JY H10 H10 H 0 1 N N N -23.680 -48.548 -5.544  -1.745 -2.976 0.801  H10 3JY 33 
3JY H11 H11 H 0 1 N N N -27.271 -46.460 -5.617  -3.964 -1.417 -1.877 H11 3JY 34 
3JY H12 H12 H 0 1 N N N -30.832 -46.829 -4.327  -7.038 -1.206 -1.530 H12 3JY 35 
3JY H13 H13 H 0 1 N N N -29.342 -45.978 -3.795  -7.062 0.508  -2.008 H13 3JY 36 
3JY H14 H14 H 0 1 N N N -29.967 -45.738 -5.462  -6.020 -0.643 -2.877 H14 3JY 37 
3JY H15 H15 H 0 1 N N N -27.511 -44.761 -10.153 2.825  -2.553 0.952  H15 3JY 38 
3JY H16 H16 H 0 1 N N N -25.969 -41.644 -9.168  5.370  -0.224 -1.593 H16 3JY 39 
3JY C1  C1  C 0 1 N N N ?       ?       ?       4.926  3.231  -0.360 C1  3JY 40 
3JY H17 H17 H 0 1 N N N ?       ?       ?       4.306  3.921  -0.932 H17 3JY 41 
3JY H18 H18 H 0 1 N N N ?       ?       ?       4.861  3.475  0.700  H18 3JY 42 
3JY H19 H19 H 0 1 N N N ?       ?       ?       5.962  3.315  -0.690 H19 3JY 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3JY O18 P16 DOUB N N 1  
3JY O19 P16 SING N N 2  
3JY P16 O17 SING N N 3  
3JY P16 C12 SING N N 4  
3JY C20 C10 SING N N 5  
3JY C20 C7  SING N N 6  
3JY O11 C10 SING N N 7  
3JY O11 C12 SING N N 8  
3JY C10 C9  SING N N 9  
3JY C12 C13 SING N N 10 
3JY C7  N6  SING N N 11 
3JY C7  C8  SING N N 12 
3JY O14 C13 DOUB N N 13 
3JY O23 C22 DOUB N N 14 
3JY C13 O15 SING N N 15 
3JY N6  C22 SING N N 16 
3JY N6  C5  SING N N 17 
3JY C22 N21 SING N N 18 
3JY C9  C8  SING N N 19 
3JY C5  C3  DOUB N N 20 
3JY N21 C2  SING N N 21 
3JY C3  C2  SING N N 22 
3JY C3  C4  SING N N 23 
3JY C2  O1  DOUB N N 24 
3JY N21 H1  SING N N 25 
3JY C7  H2  SING N N 26 
3JY C20 H3  SING N N 27 
3JY C20 H4  SING N N 28 
3JY C10 H5  SING N N 29 
3JY C12 H6  SING N N 30 
3JY C9  H7  SING N N 31 
3JY C9  H8  SING N N 32 
3JY C8  H9  SING N N 33 
3JY C8  H10 SING N N 34 
3JY C5  H11 SING N N 35 
3JY C4  H12 SING N N 36 
3JY C4  H13 SING N N 37 
3JY C4  H14 SING N N 38 
3JY O19 H15 SING N N 39 
3JY O17 H16 SING N N 40 
3JY O15 C1  SING N N 41 
3JY C1  H17 SING N N 42 
3JY C1  H18 SING N N 43 
3JY C1  H19 SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3JY SMILES           ACDLabs              12.01 "O=C(OC)C(OC2CC(N1C=C(C(=O)NC1=O)C)CC2)P(=O)(O)O"                                                                                                            
3JY InChI            InChI                1.03  "InChI=1S/C13H19N2O8P/c1-7-6-15(13(18)14-10(7)16)8-3-4-9(5-8)23-12(11(17)22-2)24(19,20)21/h6,8-9,12H,3-5H2,1-2H3,(H,14,16,18)(H2,19,20,21)/t8-,9+,12-/m1/s1" 
3JY InChIKey         InChI                1.03  VZWKSNLNIFIGPO-VDDIYKPWSA-N                                                                                                                                  
3JY SMILES_CANONICAL CACTVS               3.385 "COC(=O)[C@H](O[C@H]1CC[C@H](C1)N2C=C(C)C(=O)NC2=O)[P](O)(O)=O"                                                                                              
3JY SMILES           CACTVS               3.385 "COC(=O)[CH](O[CH]1CC[CH](C1)N2C=C(C)C(=O)NC2=O)[P](O)(O)=O"                                                                                                 
3JY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)[C@@H]2CC[C@@H](C2)O[C@@H](C(=O)OC)P(=O)(O)O"                                                                                             
3JY SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)C2CCC(C2)OC(C(=O)OC)P(=O)(O)O"                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3JY "SYSTEMATIC NAME" ACDLabs              12.01 "[(1R)-2-methoxy-1-{[(1S,3R)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclopentyl]oxy}-2-oxoethyl]phosphonic acid"       
3JY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1R)-2-methoxy-1-[(1S,3R)-3-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]cyclopentyl]oxy-2-oxidanylidene-ethyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3JY "Create component" 2014-08-28 RCSB 
3JY "Initial release"  2015-03-11 RCSB 
# 
