data_38Y
# 
_chem_comp.id                                    38Y 
_chem_comp.name                                  "3-(AMINOMETHYL)-4-BROMO-7-ETHOXYBENZO[C][1,2]OXABOROL-1(3H)-OL-MODIFIED ADENOSINE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H25 B Br N6 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-02-03 
_chem_comp.pdbx_modified_date                    2016-03-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        615.136 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     38Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5AGS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
38Y B      B      B  0 1 N N N -15.814 5.725 -11.027 0.345  1.313  0.251  B      38Y 1  
38Y P      P      P  0 1 N N N -22.668 4.792 -9.948  -6.338 3.453  0.144  P      38Y 2  
38Y N1     N1     N  0 1 Y N N -21.082 6.226 -17.866 -1.381 -5.980 -0.163 N1     38Y 3  
38Y O1     O1     O  0 1 N N N -14.656 6.583 -11.084 1.712  1.691  0.320  O1     38Y 4  
38Y C2     C2     C  0 1 Y N N -20.374 5.158 -17.462 -0.836 -5.104 0.660  C2     38Y 5  
38Y N3     N3     N  0 1 Y N N -19.749 5.160 -16.269 -1.195 -3.838 0.683  N3     38Y 6  
38Y C4     C4     C  0 1 Y N N -19.854 6.259 -15.487 -2.137 -3.386 -0.138 C4     38Y 7  
38Y C5     C5     C  0 1 Y N N -20.589 7.370 -15.888 -2.748 -4.280 -1.034 C5     38Y 8  
38Y C6     C6     C  0 1 Y N N -21.220 7.354 -17.132 -2.331 -5.621 -1.021 C6     38Y 9  
38Y N6     N6     N  0 1 N N N -21.947 8.412 -17.577 -2.896 -6.547 -1.880 N6     38Y 10 
38Y N7     N7     N  0 1 Y N N -20.502 8.306 -14.913 -3.658 -3.572 -1.745 N7     38Y 11 
38Y C8     C8     C  0 1 Y N N -19.753 7.763 -13.937 -3.646 -2.331 -1.352 C8     38Y 12 
38Y N9     N9     N  0 1 Y N N -19.347 6.523 -14.272 -2.724 -2.166 -0.362 N9     38Y 13 
38Y BR     BR     BR 0 0 N N N -11.192 3.856 -9.492  4.187  -1.950 0.934  BR     38Y 14 
38Y "C1'"  "C1'"  C  0 1 N N R -18.467 5.584 -13.514 -2.415 -0.915 0.335  "C1'"  38Y 15 
38Y C10    C10    C  0 1 N N S -13.412 5.924 -10.798 2.564  0.689  0.879  C10    38Y 16 
38Y C11    C11    C  0 1 Y N N -13.848 4.618 -10.267 3.941  0.809  0.279  C11    38Y 17 
38Y C12    C12    C  0 1 Y N N -15.270 4.457 -10.444 4.371  2.022  -0.225 C12    38Y 18 
38Y C13    C13    C  0 1 Y N N -13.020 3.546 -9.700  4.776  -0.293 0.237  C13    38Y 19 
38Y C14    C14    C  0 1 Y N N -13.643 2.368 -9.269  6.040  -0.186 -0.313 C14    38Y 20 
38Y C15    C15    C  0 1 Y N N -15.022 2.205 -9.412  6.472  1.024  -0.823 C15    38Y 21 
38Y C16    C16    C  0 1 Y N N -15.871 3.188 -9.957  5.639  2.132  -0.777 C16    38Y 22 
38Y O1P    O1P    O  0 1 N N N -23.340 6.073 -10.284 -7.427 3.338  1.324  O1P    38Y 23 
38Y "C2'"  "C2'"  C  0 1 N N R -17.421 6.339 -12.704 -1.212 -0.226 -0.334 "C2'"  38Y 24 
38Y "O2'"  "O2'"  O  0 1 N N N -16.304 5.529 -12.398 -0.226 0.070  0.682  "O2'"  38Y 25 
38Y O2P    O2P    O  0 1 N N N -23.419 3.542 -10.354 -6.954 3.041  -1.137 O2P    38Y 26 
38Y "C3'"  "C3'"  C  0 1 N N S -18.046 6.534 -11.346 -1.745 1.187  -0.720 "C3'"  38Y 27 
38Y "O3'"  "O3'"  O  0 1 N N N -16.963 6.337 -10.442 -0.735 2.098  -0.255 "O3'"  38Y 28 
38Y C33    C33    C  0 1 N N N -12.659 5.734 -12.134 2.650  0.880  2.395  C33    38Y 29 
38Y N34    N34    N  0 1 N N N -13.493 5.083 -13.170 1.330  0.645  2.994  N34    38Y 30 
38Y O35    O35    O  0 1 N N N -17.215 3.027 -10.088 6.064  3.323  -1.273 O35    38Y 31 
38Y C36    C36    C  0 1 N N N -17.832 1.855 -9.519  7.380  3.363  -1.827 C36    38Y 32 
38Y C37    C37    C  0 1 N N N -19.315 2.050 -9.698  7.679  4.777  -2.331 C37    38Y 33 
38Y O3P    O3P    O  0 1 N N N -22.123 4.730 -8.538  -5.829 4.976  0.030  O3P    38Y 34 
38Y "C4'"  "C4'"  C  0 1 N N R -19.071 5.403 -11.254 -2.991 1.325  0.187  "C4'"  38Y 35 
38Y "O4'"  "O4'"  O  0 1 N N N -19.173 4.795 -12.558 -3.533 -0.011 0.236  "O4'"  38Y 36 
38Y "C5'"  "C5'"  C  0 1 N N N -20.466 5.903 -10.897 -4.002 2.292  -0.435 "C5'"  38Y 37 
38Y "O5'"  "O5'"  O  0 1 N N N -21.341 4.773 -10.886 -5.088 2.492  0.472  "O5'"  38Y 38 
38Y H2     H2     H  0 1 N N N -20.305 4.289 -18.100 -0.067 -5.438 1.341  H2     38Y 39 
38Y HN6    HN6    H  0 1 N N N -22.325 8.202 -18.479 -2.599 -7.470 -1.862 HN6    38Y 40 
38Y HN6A   HN6A   H  0 0 N N N -22.694 8.596 -16.938 -3.588 -6.272 -2.501 HN6A   38Y 41 
38Y H8     H8     H  0 1 N N N -19.509 8.256 -13.007 -4.273 -1.548 -1.752 H8     38Y 42 
38Y "H1'"  "H1'"  H  0 1 N N N -17.948 4.928 -14.228 -2.189 -1.120 1.382  "H1'"  38Y 43 
38Y H10    H10    H  0 1 N N N -12.796 6.478 -10.074 2.157  -0.298 0.660  H10    38Y 44 
38Y H12    H12    H  0 1 N N N -15.871 5.224 -10.909 3.721  2.883  -0.188 H12    38Y 45 
38Y H14    H14    H  0 1 N N N -13.053 1.581 -8.823  6.691  -1.047 -0.344 H14    38Y 46 
38Y H15    H15    H  0 1 N N N -15.462 1.274 -9.087  7.460  1.107  -1.252 H15    38Y 47 
38Y HO1P   HO1P   H  0 0 N N N -24.166 5.894 -10.717 -8.210 3.891  1.192  HO1P   38Y 48 
38Y "H2'"  "H2'"  H  0 1 N N N -17.153 7.296 -13.175 -0.808 -0.790 -1.174 "H2'"  38Y 49 
38Y "H3'"  "H3'"  H  0 1 N N N -18.521 7.521 -11.249 -1.973 1.287  -1.781 "H3'"  38Y 50 
38Y H33    H33    H  0 1 N N N -12.344 6.721 -12.504 3.368  0.173  2.810  H33    38Y 51 
38Y H33A   H33A   H  0 0 N N N -11.772 5.110 -11.953 2.973  1.898  2.615  H33A   38Y 52 
38Y HN34   HN34   H  0 0 N N N -12.962 4.983 -14.012 0.980  -0.269 2.750  HN34   38Y 53 
38Y HN3A   HN3A   H  0 0 N N N -13.780 4.181 -12.848 1.360  0.765  3.995  HN3A   38Y 54 
38Y H36    H36    H  0 1 N N N -17.497 0.950 -10.047 8.106  3.090  -1.061 H36    38Y 55 
38Y H36A   H36A   H  0 0 N N N -17.582 1.770 -8.451  7.447  2.660  -2.658 H36A   38Y 56 
38Y H37    H37    H  0 1 N N N -19.852 1.185 -9.282  8.684  4.807  -2.754 H37    38Y 57 
38Y H37A   H37A   H  0 0 N N N -19.631 2.964 -9.173  6.954  5.050  -3.098 H37A   38Y 58 
38Y H37B   H37B   H  0 0 N N N -19.546 2.144 -10.769 7.613  5.480  -1.501 H37B   38Y 59 
38Y HO3P   HO3P   H  0 0 N N N -22.354 3.896 -8.145  -5.413 5.313  0.835  HO3P   38Y 60 
38Y "H4'"  "H4'"  H  0 1 N N N -18.740 4.667 -10.506 -2.705 1.662  1.183  "H4'"  38Y 61 
38Y "H5'"  "H5'"  H  0 1 N N N -20.452 6.376 -9.904  -3.516 3.246  -0.636 "H5'"  38Y 62 
38Y "H5'A" "H5'A" H  0 0 N N N -20.806 6.633 -11.646 -4.380 1.872  -1.367 "H5'A" 38Y 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
38Y "O2'" B      SING N N 1  
38Y O1    B      SING N N 2  
38Y B     "O3'"  SING N N 3  
38Y "O5'" P      SING N N 4  
38Y O2P   P      DOUB N N 5  
38Y O1P   P      SING N N 6  
38Y P     O3P    SING N N 7  
38Y N1    C2     DOUB Y N 8  
38Y N1    C6     SING Y N 9  
38Y O1    C10    SING N N 10 
38Y C2    N3     SING Y N 11 
38Y C2    H2     SING N N 12 
38Y N3    C4     DOUB Y N 13 
38Y C5    C4     SING Y N 14 
38Y C4    N9     SING Y N 15 
38Y C6    C5     DOUB Y N 16 
38Y C5    N7     SING Y N 17 
38Y N6    C6     SING N N 18 
38Y N6    HN6    SING N N 19 
38Y N6    HN6A   SING N N 20 
38Y N7    C8     DOUB Y N 21 
38Y N9    C8     SING Y N 22 
38Y C8    H8     SING N N 23 
38Y N9    "C1'"  SING N N 24 
38Y C13   BR     SING N N 25 
38Y "C1'" "C2'"  SING N N 26 
38Y "C1'" "O4'"  SING N N 27 
38Y "C1'" "H1'"  SING N N 28 
38Y C33   C10    SING N N 29 
38Y C10   C11    SING N N 30 
38Y C10   H10    SING N N 31 
38Y C12   C11    DOUB Y N 32 
38Y C11   C13    SING Y N 33 
38Y C12   C16    SING Y N 34 
38Y C12   H12    SING N N 35 
38Y C13   C14    DOUB Y N 36 
38Y C15   C14    SING Y N 37 
38Y C14   H14    SING N N 38 
38Y C16   C15    DOUB Y N 39 
38Y C15   H15    SING N N 40 
38Y O35   C16    SING N N 41 
38Y O1P   HO1P   SING N N 42 
38Y "C2'" "O2'"  SING N N 43 
38Y "C2'" "C3'"  SING N N 44 
38Y "C2'" "H2'"  SING N N 45 
38Y "C3'" "C4'"  SING N N 46 
38Y "C3'" "O3'"  SING N N 47 
38Y "C3'" "H3'"  SING N N 48 
38Y N34   C33    SING N N 49 
38Y C33   H33    SING N N 50 
38Y C33   H33A   SING N N 51 
38Y N34   HN34   SING N N 52 
38Y N34   HN3A   SING N N 53 
38Y O35   C36    SING N N 54 
38Y C37   C36    SING N N 55 
38Y C36   H36    SING N N 56 
38Y C36   H36A   SING N N 57 
38Y C37   H37    SING N N 58 
38Y C37   H37A   SING N N 59 
38Y C37   H37B   SING N N 60 
38Y O3P   HO3P   SING N N 61 
38Y "O4'" "C4'"  SING N N 62 
38Y "C4'" "C5'"  SING N N 63 
38Y "C4'" "H4'"  SING N N 64 
38Y "C5'" "O5'"  SING N N 65 
38Y "C5'" "H5'"  SING N N 66 
38Y "C5'" "H5'A" SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
38Y SMILES           ACDLabs              12.01 "Brc1ccc(OCC)cc1C(OB4OC5C(OC(n2c3ncnc(N)c3nc2)C5O4)COP(=O)(O)O)CN" 
38Y InChI            InChI                1.03  
"InChI=1S/C20H25BBrN6O9P/c1-2-32-10-3-4-12(22)11(5-10)13(6-23)35-21-36-16-14(7-33-38(29,30)31)34-20(17(16)37-21)28-9-27-15-18(24)25-8-26-19(15)28/h3-5,8-9,13-14,16-17,20H,2,6-7,23H2,1H3,(H2,24,25,26)(H2,29,30,31)/t13-,14-,16-,17-,20-/m1/s1" 
38Y InChIKey         InChI                1.03  SFZDVNHRQSVZOB-CDUMDVBJSA-N 
38Y SMILES_CANONICAL CACTVS               3.385 "CCOc1ccc(Br)c(c1)[C@@H](CN)OB2O[C@@H]3[C@@H](CO[P](O)(O)=O)O[C@H]([C@@H]3O2)n4cnc5c(N)ncnc45" 
38Y SMILES           CACTVS               3.385 "CCOc1ccc(Br)c(c1)[CH](CN)OB2O[CH]3[CH](CO[P](O)(O)=O)O[CH]([CH]3O2)n4cnc5c(N)ncnc45" 
38Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "B1(O[C@@H]2[C@H](O[C@H]([C@@H]2O1)n3cnc4c3ncnc4N)COP(=O)(O)O)O[C@H](CN)c5cc(ccc5Br)OCC" 
38Y SMILES           "OpenEye OEToolkits" 1.7.6 "B1(OC2C(OC(C2O1)n3cnc4c3ncnc4N)COP(=O)(O)O)OC(CN)c5cc(ccc5Br)OCC" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
38Y "SYSTEMATIC NAME" ACDLabs              12.01 "[(3aS,4R,6R,6aR)-2-[(1S)-2-amino-1-(2-bromo-5-ethoxyphenyl)ethoxy]-6-(6-amino-9H-purin-9-yl)tetrahydrofuro[3,4-d][1,3,2]dioxaborol-4-yl]methyl dihydrogen phosphate"             
38Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(3aR,4R,6R,6aS)-4-(6-aminopurin-9-yl)-2-[(1S)-2-azanyl-1-(2-bromanyl-5-ethoxy-phenyl)ethoxy]-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3,2]dioxaborol-6-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
38Y "Create component"   2015-02-03 EBI  
38Y "Other modification" 2015-06-18 EBI  
38Y "Initial release"    2016-03-09 RCSB 
# 
