data_23Y
#

_chem_comp.id                                   23Y
_chem_comp.name                                 
;(2S,3S)-3-(3,5-dihydroxyphenyl)-2-(4-hydroxyphenyl)-4-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-6-yl
beta-D-glucopyranoside
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C34 H32 O11"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "POLYPHENOL EPSILON-VINIFERIN GLUCOSIDE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-08-27
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       616.611
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    23Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2M9R
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
23Y  CG1   CG1   C  0  1  Y  N  N  49.669  41.852   1.181   0.651   1.054  -0.060  CG1   23Y   1  
23Y  CG9   CG9   C  0  1  Y  N  N  50.436  41.683   0.019   1.722   0.185   0.139  CG9   23Y   2  
23Y  CG8   CG8   C  0  1  Y  N  N  50.089  40.718  -0.921   1.500  -1.152   0.429  CG8   23Y   3  
23Y  OG2   OG2   O  0  1  N  N  N  49.910  42.755   2.183   0.653   2.382  -0.361  OG2   23Y   4  
23Y  CG3   CG3   C  0  1  N  N  S  48.764  42.710   3.078  -0.635   2.940  -0.051  CG3   23Y   5  
23Y  CG5   CG5   C  0  1  Y  N  N  48.537  41.021   1.411  -0.641   0.563   0.041  CG5   23Y   6  
23Y  CG6   CG6   C  0  1  Y  N  N  48.185  39.992   0.462  -0.873  -0.779   0.332  CG6   23Y   7  
23Y  CG7   CG7   C  0  1  Y  N  N  48.975  39.889  -0.698   0.209  -1.643   0.525  CG7   23Y   8  
23Y  CG4   CG4   C  0  1  N  N  S  47.966  41.393   2.783  -1.581   1.726  -0.211  CG4   23Y   9  
23Y  CB1   CB1   C  0  1  Y  N  N  48.322  43.627   5.420   0.053   2.814   2.351  CB1   23Y  10  
23Y  CB2   CB2   C  0  1  Y  N  N  48.676  43.824   6.753   0.026   3.288   3.649  CB2   23Y  11  
23Y  CB3   CB3   C  0  1  Y  N  N  49.867  43.295   7.242  -0.729   4.409   3.961  CB3   23Y  12  
23Y  OB3   OB3   O  0  1  N  N  N  50.212  43.477   8.554  -0.757   4.877   5.236  OB3   23Y  13  
23Y  CB4   CB4   C  0  1  Y  N  N  50.709  42.575   6.400  -1.455   5.051   2.968  CB4   23Y  14  
23Y  CB5   CB5   C  0  1  Y  N  N  50.360  42.379   5.066  -1.425   4.573   1.673  CB5   23Y  15  
23Y  CB6   CB6   C  0  1  Y  N  N  49.163  42.906   4.561  -0.667   3.459   1.363  CB6   23Y  16  
23Y  CC1   CC1   C  0  1  Y  N  N  45.641  42.225   1.994  -3.518   1.603  -1.790  CC1   23Y  17  
23Y  CC2   CC2   C  0  1  Y  N  N  44.265  42.337   2.170  -4.044   1.548  -3.073  CC2   23Y  18  
23Y  OC2   OC2   O  0  1  N  N  N  43.508  42.977   1.226  -5.389   1.486  -3.254  OC2   23Y  19  
23Y  CC3   CC3   C  0  1  Y  N  N  43.662  41.797   3.301  -3.196   1.556  -4.170  CC3   23Y  20  
23Y  CC4   CC4   C  0  1  Y  N  N  44.432  41.146   4.258  -1.824   1.620  -3.982  CC4   23Y  21  
23Y  OC4   OC4   O  0  1  N  N  N  43.833  40.635   5.375  -0.990   1.629  -5.055  OC4   23Y  22  
23Y  CC5   CC5   C  0  1  Y  N  N  45.807  41.024   4.083  -1.303   1.675  -2.697  CC5   23Y  23  
23Y  CC6   CC6   C  0  1  Y  N  N  46.428  41.557   2.945  -2.150   1.666  -1.605  CC6   23Y  24  
23Y  CD1   CD1   C  0  1  N  N  N  47.007  39.042   0.743  -2.253  -1.287   0.432  CD1   23Y  25  
23Y  CD2   CD2   C  0  1  N  N  N  46.510  38.054  -0.029  -2.473  -2.581   0.712  CD2   23Y  26  
23Y  CE1   CE1   C  0  1  Y  N  N  43.450  36.365   1.610  -6.222  -2.705   0.710  CE1   23Y  27  
23Y  CE2   CE2   C  0  1  Y  N  N  43.152  35.394   0.657  -6.448  -4.044   1.000  CE2   23Y  28  
23Y  OE2   OE2   O  0  1  N  N  N  42.100  34.539   0.845  -7.720  -4.512   1.093  OE2   23Y  29  
23Y  CE3   CE3   C  0  1  Y  N  N  43.924  35.289  -0.493  -5.376  -4.907   1.196  CE3   23Y  30  
23Y  CE4   CE4   C  0  1  Y  N  N  44.999  36.149  -0.696  -4.084  -4.437   1.104  CE4   23Y  31  
23Y  CE5   CE5   C  0  1  Y  N  N  45.319  37.130   0.257  -3.853  -3.089   0.812  CE5   23Y  32  
23Y  CE6   CE6   C  0  1  Y  N  N  44.528  37.224   1.415  -4.934  -2.226   0.610  CE6   23Y  33  
23Y  CF5   CF5   C  0  1  N  N  R  50.794  37.435  -3.880   5.348  -0.366  -1.055  CF5   23Y  34  
23Y  OF    OF    O  0  1  N  N  N  50.854  38.413  -2.802   4.076  -0.979  -0.837  OF    23Y  35  
23Y  CF1   CF1   C  0  1  N  N  S  50.799  39.817  -3.191   3.861  -1.417   0.507  CF1   23Y  36  
23Y  OF1   OF1   O  0  1  N  N  N  50.947  40.667  -2.023   2.555  -1.986   0.619  OF1   23Y  37  
23Y  CF2   CF2   C  0  1  N  N  R  51.969  40.137  -4.163   4.911  -2.469   0.872  CF2   23Y  38  
23Y  OF2   OF2   O  0  1  N  N  N  51.825  41.461  -4.678   4.734  -2.868   2.233  OF2   23Y  39  
23Y  CF3   CF3   C  0  1  N  N  S  52.034  39.135  -5.342   6.309  -1.870   0.691  CF3   23Y  40  
23Y  OF3   OF3   O  0  1  N  N  N  53.247  39.353  -6.060   7.295  -2.868   0.959  OF3   23Y  41  
23Y  CF4   CF4   C  0  1  N  N  S  51.974  37.658  -4.873   6.458  -1.377  -0.752  CF4   23Y  42  
23Y  OF4   OF4   O  0  1  N  N  N  51.801  36.814  -6.012   7.732  -0.750  -0.913  OF4   23Y  43  
23Y  CF6   CF6   C  0  1  N  N  N  50.757  36.026  -3.251   5.454   0.086  -2.513  CF6   23Y  44  
23Y  OF6   OF6   O  0  1  N  N  N  51.878  35.781  -2.402   4.493   1.113  -2.764  OF6   23Y  45  
23Y  HCG9  HCG9  H  0  0  N  N  N  51.302  42.306  -0.147   2.734   0.556   0.066  HCG9  23Y  46  
23Y  HCG3  HCG3  H  0  0  N  N  N  48.098  43.545   2.816  -0.894   3.730  -0.757  HCG3  23Y  47  
23Y  HCG7  HCG7  H  0  0  N  N  N  48.717  39.149  -1.441   0.039  -2.686   0.748  HCG7  23Y  48  
23Y  HCG4  HCG4  H  0  0  N  N  N  48.299  40.634   3.506  -2.378   1.752   0.532  HCG4  23Y  49  
23Y  HCB1  HCB1  H  0  0  N  N  N  47.393  44.032   5.046   0.641   1.941   2.108  HCB1  23Y  50  
23Y  HCB2  HCB2  H  0  0  N  N  N  48.026  44.387   7.407   0.592   2.786   4.419  HCB2  23Y  51  
23Y  HOB3  HOB3  H  0  0  N  N  N  49.539  43.985   8.991  -0.070   5.529   5.431  HOB3  23Y  52  
23Y  HCB4  HCB4  H  0  0  N  N  N  51.634  42.168   6.781  -2.044   5.924   3.209  HCB4  23Y  53  
23Y  HCB5  HCB5  H  0  0  N  N  N  51.015  41.818   4.417  -1.991   5.073   0.900  HCB5  23Y  54  
23Y  HCC1  HCC1  H  0  0  N  N  N  46.106  42.655   1.120  -4.178   1.601  -0.936  HCC1  23Y  55  
23Y  HOC2  HOC2  H  0  0  N  N  N  42.596  42.968   1.492  -5.816   2.351  -3.329  HOC2  23Y  56  
23Y  HCC3  HCC3  H  0  0  N  N  N  42.594  41.884   3.436  -3.604   1.513  -5.169  HCC3  23Y  57  
23Y  HOC4  HOC4  H  0  0  N  N  N  44.488  40.225   5.927  -0.787   2.514  -5.388  HOC4  23Y  58  
23Y  HCC5  HCC5  H  0  0  N  N  N  46.400  40.515   4.829  -0.234   1.724  -2.550  HCC5  23Y  59  
23Y  HCD1  HCD1  H  0  0  N  N  N  46.509  39.187   1.690  -3.087  -0.618   0.280  HCD1  23Y  60  
23Y  HCD2  HCD2  H  0  0  N  N  N  47.015  37.892  -0.970  -1.639  -3.250   0.864  HCD2  23Y  61  
23Y  HCE1  HCE1  H  0  0  N  N  N  42.845  36.452   2.500  -7.058  -2.038   0.559  HCE1  23Y  62  
23Y  HOE2  HOE2  H  0  0  N  N  N  41.675  34.736   1.671  -8.081  -4.836   0.256  HOE2  23Y  63  
23Y  HCE3  HCE3  H  0  0  N  N  N  43.689  34.537  -1.232  -5.556  -5.948   1.421  HCE3  23Y  64  
23Y  HCE4  HCE4  H  0  0  N  N  N  45.592  36.061  -1.594  -3.252  -5.108   1.256  HCE4  23Y  65  
23Y  HCE6  HCE6  H  0  0  N  N  N  44.759  37.970   2.161  -4.760  -1.186   0.381  HCE6  23Y  66  
23Y  HCF5  HCF5  H  0  0  N  N  N  49.857  37.578  -4.439   5.453   0.497  -0.398  HCF5  23Y  67  
23Y  HCF1  HCF1  H  0  0  N  N  N  49.847  40.032  -3.699   3.947  -0.567   1.184  HCF1  23Y  68  
23Y  HCF2  HCF2  H  0  0  N  N  N  52.910  40.060  -3.598   4.799  -3.336   0.221  HCF2  23Y  69  
23Y  HOF2  HOF2  H  0  0  N  N  N  51.785  42.079  -3.958   3.867  -3.253   2.420  HOF2  23Y  70  
23Y  HCF3  HCF3  H  0  0  N  N  N  51.172  39.322  -6.000   6.438  -1.033   1.377  HCF3  23Y  71  
23Y  HOF3  HOF3  H  0  0  N  N  N  53.287  40.257  -6.349   7.259  -3.225   1.857  HOF3  23Y  72  
23Y  HCF4  HCF4  H  0  0  N  N  N  52.915  37.415  -4.358   6.377  -2.222  -1.436  HCF4  23Y  73  
23Y  HOF4  HOF4  H  0  0  N  N  N  51.763  35.907  -5.732   8.482  -1.332  -0.732  HOF4  23Y  74  
23Y  HF61  HF61  H  0  0  N  N  N  49.836  35.928  -2.658   6.456   0.472  -2.701  HF61  23Y  75  
23Y  HF62  HF62  H  0  0  N  N  N  50.755  35.279  -4.058   5.261  -0.762  -3.171  HF62  23Y  76  
23Y  HCF6  HCF6  H  0  0  N  N  N  51.815  34.906  -2.038   4.503   1.448  -3.671  HCF6  23Y  77  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
23Y  OF3  CF3   SING  N  N   1  
23Y  OF4  CF4   SING  N  N   2  
23Y  CF3  CF4   SING  N  N   3  
23Y  CF3  CF2   SING  N  N   4  
23Y  CF4  CF5   SING  N  N   5  
23Y  OF2  CF2   SING  N  N   6  
23Y  CF2  CF1   SING  N  N   7  
23Y  CF5  CF6   SING  N  N   8  
23Y  CF5  OF    SING  N  N   9  
23Y  CF6  OF6   SING  N  N  10  
23Y  CF1  OF    SING  N  N  11  
23Y  CF1  OF1   SING  N  N  12  
23Y  OF1  CG8   SING  N  N  13  
23Y  CG8  CG7   DOUB  Y  N  14  
23Y  CG8  CG9   SING  Y  N  15  
23Y  CG7  CG6   SING  Y  N  16  
23Y  CE4  CE3   DOUB  Y  N  17  
23Y  CE4  CE5   SING  Y  N  18  
23Y  CE3  CE2   SING  Y  N  19  
23Y  CD2  CE5   SING  N  N  20  
23Y  CD2  CD1   DOUB  N  E  21  
23Y  CG9  CG1   DOUB  Y  N  22  
23Y  CE5  CE6   DOUB  Y  N  23  
23Y  CG6  CD1   SING  N  N  24  
23Y  CG6  CG5   DOUB  Y  N  25  
23Y  CE2  OE2   SING  N  N  26  
23Y  CE2  CE1   DOUB  Y  N  27  
23Y  CG1  CG5   SING  Y  N  28  
23Y  CG1  OG2   SING  N  N  29  
23Y  OC2  CC2   SING  N  N  30  
23Y  CG5  CG4   SING  N  N  31  
23Y  CE6  CE1   SING  Y  N  32  
23Y  CC1  CC2   DOUB  Y  N  33  
23Y  CC1  CC6   SING  Y  N  34  
23Y  CC2  CC3   SING  Y  N  35  
23Y  OG2  CG3   SING  N  N  36  
23Y  CG4  CC6   SING  N  N  37  
23Y  CG4  CG3   SING  N  N  38  
23Y  CC6  CC5   DOUB  Y  N  39  
23Y  CG3  CB6   SING  N  N  40  
23Y  CC3  CC4   DOUB  Y  N  41  
23Y  CC5  CC4   SING  Y  N  42  
23Y  CC4  OC4   SING  N  N  43  
23Y  CB6  CB5   DOUB  Y  N  44  
23Y  CB6  CB1   SING  Y  N  45  
23Y  CB5  CB4   SING  Y  N  46  
23Y  CB1  CB2   DOUB  Y  N  47  
23Y  CB4  CB3   DOUB  Y  N  48  
23Y  CB2  CB3   SING  Y  N  49  
23Y  CB3  OB3   SING  N  N  50  
23Y  CG9  HCG9  SING  N  N  51  
23Y  CG3  HCG3  SING  N  N  52  
23Y  CG7  HCG7  SING  N  N  53  
23Y  CG4  HCG4  SING  N  N  54  
23Y  CB1  HCB1  SING  N  N  55  
23Y  CB2  HCB2  SING  N  N  56  
23Y  OB3  HOB3  SING  N  N  57  
23Y  CB4  HCB4  SING  N  N  58  
23Y  CB5  HCB5  SING  N  N  59  
23Y  CC1  HCC1  SING  N  N  60  
23Y  OC2  HOC2  SING  N  N  61  
23Y  CC3  HCC3  SING  N  N  62  
23Y  OC4  HOC4  SING  N  N  63  
23Y  CC5  HCC5  SING  N  N  64  
23Y  CD1  HCD1  SING  N  N  65  
23Y  CD2  HCD2  SING  N  N  66  
23Y  CE1  HCE1  SING  N  N  67  
23Y  OE2  HOE2  SING  N  N  68  
23Y  CE3  HCE3  SING  N  N  69  
23Y  CE4  HCE4  SING  N  N  70  
23Y  CE6  HCE6  SING  N  N  71  
23Y  CF5  HCF5  SING  N  N  72  
23Y  CF1  HCF1  SING  N  N  73  
23Y  CF2  HCF2  SING  N  N  74  
23Y  OF2  HOF2  SING  N  N  75  
23Y  CF3  HCF3  SING  N  N  76  
23Y  OF3  HOF3  SING  N  N  77  
23Y  CF4  HCF4  SING  N  N  78  
23Y  OF4  HOF4  SING  N  N  79  
23Y  CF6  HF61  SING  N  N  80  
23Y  CF6  HF62  SING  N  N  81  
23Y  OF6  HCF6  SING  N  N  82  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
23Y  SMILES            ACDLabs               12.01  "O(c4cc5OC(c1ccc(O)cc1)C(c2cc(O)cc(O)c2)c5c(\C=C\c3ccc(O)cc3)c4)C6OC(C(O)C(O)C6O)CO"  
23Y  InChI             InChI                 1.03   "InChI=1S/C34H32O11/c35-16-27-30(40)31(41)32(42)34(45-27)43-25-13-19(4-1-17-2-7-21(36)8-3-17)28-26(15-25)44-33(18-5-9-22(37)10-6-18)29(28)20-11-23(38)14-24(39)12-20/h1-15,27,29-42H,16H2/b4-1+/t27-,29+,30-,31+,32-,33-,34-/m1/s1"  
23Y  InChIKey          InChI                 1.03   NHYFNLFVNSLRES-YNVKLIFMSA-N  
23Y  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H](Oc2cc3O[C@@H]([C@@H](c4cc(O)cc(O)c4)c3c(/C=C/c5ccc(O)cc5)c2)c6ccc(O)cc6)[C@H](O)[C@@H](O)[C@@H]1O"  
23Y  SMILES            CACTVS                3.385  "OC[CH]1O[CH](Oc2cc3O[CH]([CH](c4cc(O)cc(O)c4)c3c(C=Cc5ccc(O)cc5)c2)c6ccc(O)cc6)[CH](O)[CH](O)[CH]1O"  
23Y  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1cc(ccc1/C=C/c2cc(cc3c2[C@@H]([C@H](O3)c4ccc(cc4)O)c5cc(cc(c5)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)O"  
23Y  SMILES            "OpenEye OEToolkits"  1.7.6  "c1cc(ccc1C=Cc2cc(cc3c2C(C(O3)c4ccc(cc4)O)c5cc(cc(c5)O)O)OC6C(C(C(C(O6)CO)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
23Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S,3S)-3-(3,5-dihydroxyphenyl)-2-(4-hydroxyphenyl)-4-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-6-yl beta-D-glucopyranoside"  
23Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S,3R,4S,5S,6R)-2-[[(2S,3S)-3-[3,5-bis(oxidanyl)phenyl]-2-(4-hydroxyphenyl)-4-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-6-yl]oxy]-6-(hydroxymethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
23Y  "Create component"  2013-08-27  RCSB  
23Y  "Initial release"   2013-09-11  RCSB  
23Y  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     23Y
_pdbx_chem_comp_synonyms.name        "POLYPHENOL EPSILON-VINIFERIN GLUCOSIDE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
