data_13Y
# 
_chem_comp.id                                    13Y 
_chem_comp.name                                  "2-(3-chlorophenoxy)-4-{(1R)-3-methyl-1-[(3S)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)piperidin-1-yl]butyl}benzoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H32 Cl N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-10-04 
_chem_comp.pdbx_modified_date                    2012-10-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        526.024 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     13Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4HDC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
13Y C2  C2  C  0 1 Y N N 18.621 -0.564 2.455  3.351  -2.069 2.384  C2  13Y 1  
13Y C4  C4  C  0 1 Y N N 16.894 -1.897 3.445  5.420  -1.123 1.627  C4  13Y 2  
13Y C5  C5  C  0 1 Y N N 16.796 -0.963 4.475  4.935  -1.090 0.334  C5  13Y 3  
13Y C6  C6  C  0 1 Y N N 17.602 0.185  4.492  3.651  -1.542 0.064  C6  13Y 4  
13Y CL1 CL1 CL 0 0 N N N 19.699 -0.268 1.160  2.364  -2.688 3.671  CL1 13Y 5  
13Y C3  C3  C  0 1 Y N N 17.829 -1.712 2.444  4.629  -1.612 2.651  C3  13Y 6  
13Y C7  C7  C  0 1 Y N N 18.518 0.398  3.460  2.861  -2.038 1.091  C7  13Y 7  
13Y O8  O8  O  0 1 N N N 17.522 1.125  5.508  3.171  -1.511 -1.208 O8  13Y 8  
13Y C9  C9  C  0 1 Y N N 16.378 1.398  6.183  2.239  -0.575 -1.513 C9  13Y 9  
13Y C10 C10 C  0 1 Y N N 16.226 1.060  7.554  1.693  -0.520 -2.804 C10 13Y 10 
13Y C11 C11 C  0 1 Y N N 15.073 1.467  8.246  0.732  0.449  -3.106 C11 13Y 11 
13Y C12 C12 C  0 1 Y N N 14.079 2.161  7.577  0.327  1.341  -2.137 C12 13Y 12 
13Y C13 C13 C  0 1 Y N N 14.216 2.482  6.222  0.869  1.284  -0.864 C13 13Y 13 
13Y C14 C14 C  0 1 Y N N 15.372 2.106  5.541  1.816  0.328  -0.549 C14 13Y 14 
13Y C15 C15 C  0 1 N N R 13.105 3.274  5.543  0.419  2.266  0.187  C15 13Y 15 
13Y C16 C16 C  0 1 N N N 13.497 4.444  4.611  1.140  3.600  -0.020 C16 13Y 16 
13Y C17 C17 C  0 1 N N N 14.567 5.397  5.162  2.638  3.415  0.232  C17 13Y 17 
13Y C18 C18 C  0 1 N N N 13.986 6.303  6.257  3.377  4.708  -0.116 C18 13Y 18 
13Y C19 C19 C  0 1 N N N 15.132 6.224  3.993  2.869  3.076  1.706  C19 13Y 19 
13Y N20 N20 N  0 1 N N N 12.021 2.472  4.933  -1.031 2.470  0.077  N20 13Y 20 
13Y C22 C22 C  0 1 N N N 11.272 1.653  5.937  -1.499 3.461  1.054  C22 13Y 21 
13Y C23 C23 C  0 1 N N N 10.015 1.055  5.323  -2.981 3.756  0.815  C23 13Y 22 
13Y C24 C24 C  0 1 N N N 10.422 0.158  4.143  -3.783 2.459  0.952  C24 13Y 23 
13Y C25 C25 C  0 1 N N S 11.231 0.984  3.118  -3.244 1.428  -0.044 C25 13Y 24 
13Y C26 C26 C  0 1 N N N 12.452 1.594  3.811  -1.754 1.201  0.221  C26 13Y 25 
13Y N27 N27 N  0 1 N N N 11.656 0.237  1.910  -3.968 0.165  0.121  N27 13Y 26 
13Y C28 C28 C  0 1 N N N 12.181 -1.040 2.060  -4.669 -0.357 -0.933 C28 13Y 27 
13Y C29 C29 C  0 1 N N N 12.648 -1.761 1.018  -5.336 -1.521 -0.781 C29 13Y 28 
13Y C30 C30 C  0 1 N N N 12.580 -1.177 -0.299 -5.295 -2.180 0.471  C30 13Y 29 
13Y O31 O31 O  0 1 N N N 12.933 -1.742 -1.351 -5.889 -3.232 0.631  O31 13Y 30 
13Y N32 N32 N  0 1 N N N 12.032 0.091  -0.346 -4.594 -1.633 1.484  N32 13Y 31 
13Y C34 C34 C  0 1 N N N 11.582 0.833  0.680  -3.934 -0.474 1.304  C34 13Y 32 
13Y O35 O35 O  0 1 N N N 11.143 1.960  0.509  -3.305 0.007  2.227  O35 13Y 33 
13Y C36 C36 C  0 1 N N N 13.211 -3.147 1.174  -6.113 -2.111 -1.930 C36 13Y 34 
13Y C37 C37 C  0 1 N N N 17.258 0.284  8.262  2.130  -1.477 -3.836 C37 13Y 35 
13Y O38 O38 O  0 1 N N N 17.737 0.688  9.327  1.603  -1.420 -5.075 O38 13Y 36 
13Y O39 O39 O  0 1 N N N 17.637 -0.865 7.732  2.966  -2.317 -3.569 O39 13Y 37 
13Y H1  H1  H  0 1 N N N 16.244 -2.759 3.429  6.419  -0.772 1.837  H1  13Y 38 
13Y H2  H2  H  0 1 N N N 16.087 -1.126 5.274  5.554  -0.712 -0.466 H2  13Y 39 
13Y H3  H3  H  0 1 N N N 17.945 -2.448 1.662  5.011  -1.637 3.661  H3  13Y 40 
13Y H4  H4  H  0 1 N N N 19.132 1.286  3.440  1.865  -2.399 0.882  H4  13Y 41 
13Y H5  H5  H  0 1 N N N 14.962 1.239  9.296  0.307  0.498  -4.098 H5  13Y 42 
13Y H6  H6  H  0 1 N N N 13.187 2.458  8.108  -0.415 2.089  -2.372 H6  13Y 43 
13Y H7  H7  H  0 1 N N N 15.487 2.369  4.500  2.230  0.287  0.447  H7  13Y 44 
13Y H8  H8  H  0 1 N N N 12.609 3.782  6.383  0.657  1.874  1.176  H8  13Y 45 
13Y H9  H9  H  0 1 N N N 12.591 5.033  4.407  0.983  3.943  -1.043 H9  13Y 46 
13Y H10 H10 H  0 1 N N N 13.876 4.016  3.671  0.743  4.339  0.676  H10 13Y 47 
13Y H11 H11 H  0 1 N N N 15.382 4.799  5.595  3.013  2.603  -0.391 H11 13Y 48 
13Y H12 H12 H  0 1 N N N 13.592 5.683  7.076  3.001  5.520  0.507  H12 13Y 49 
13Y H13 H13 H  0 1 N N N 14.776 6.962  6.645  4.444  4.576  0.063  H13 13Y 50 
13Y H14 H14 H  0 1 N N N 13.174 6.913  5.835  3.212  4.950  -1.166 H14 13Y 51 
13Y H15 H15 H  0 1 N N N 15.902 6.914  4.369  2.427  2.104  1.929  H15 13Y 52 
13Y H16 H16 H  0 1 N N N 15.578 5.549  3.248  3.940  3.043  1.907  H16 13Y 53 
13Y H17 H17 H  0 1 N N N 14.320 6.800  3.526  2.405  3.838  2.331  H17 13Y 54 
13Y H19 H19 H  0 1 N N N 11.921 0.839  6.293  -1.365 3.069  2.062  H19 13Y 55 
13Y H20 H20 H  0 1 N N N 10.988 2.294  6.785  -0.923 4.381  0.943  H20 13Y 56 
13Y H21 H21 H  0 1 N N N 9.358  1.861  4.966  -3.332 4.480  1.551  H21 13Y 57 
13Y H22 H22 H  0 1 N N N 9.483  0.456  6.077  -3.114 4.163  -0.187 H22 13Y 58 
13Y H23 H23 H  0 1 N N N 9.519  -0.242 3.659  -3.681 2.073  1.967  H23 13Y 59 
13Y H24 H24 H  0 1 N N N 11.040 -0.674 4.512  -4.834 2.656  0.741  H24 13Y 60 
13Y H25 H25 H  0 1 N N N 10.589 1.816  2.793  -3.382 1.797  -1.060 H25 13Y 61 
13Y H26 H26 H  0 1 N N N 13.087 0.787  4.205  -1.365 0.477  -0.496 H26 13Y 62 
13Y H27 H27 H  0 1 N N N 13.024 2.189  3.083  -1.619 0.818  1.232  H27 13Y 63 
13Y H28 H28 H  0 1 N N N 12.217 -1.473 3.049  -4.689 0.161  -1.881 H28 13Y 64 
13Y H29 H29 H  0 1 N N N 11.962 0.506  -1.253 -4.561 -2.079 2.345  H29 13Y 65 
13Y H30 H30 H  0 1 N N N 13.189 -3.435 2.235  -5.465 -2.770 -2.507 H30 13Y 66 
13Y H31 H31 H  0 1 N N N 12.607 -3.856 0.589  -6.958 -2.679 -1.543 H31 13Y 67 
13Y H32 H32 H  0 1 N N N 14.249 -3.164 0.811  -6.478 -1.308 -2.572 H32 13Y 68 
13Y H33 H33 H  0 1 N N N 18.371 0.058  9.649  1.921  -2.069 -5.717 H33 13Y 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
13Y O31 C30 DOUB N N 1  
13Y N32 C30 SING N N 2  
13Y N32 C34 SING N N 3  
13Y C30 C29 SING N N 4  
13Y O35 C34 DOUB N N 5  
13Y C34 N27 SING N N 6  
13Y C29 C36 SING N N 7  
13Y C29 C28 DOUB N N 8  
13Y CL1 C2  SING N N 9  
13Y N27 C28 SING N N 10 
13Y N27 C25 SING N N 11 
13Y C3  C2  DOUB Y N 12 
13Y C3  C4  SING Y N 13 
13Y C2  C7  SING Y N 14 
13Y C25 C26 SING N N 15 
13Y C25 C24 SING N N 16 
13Y C4  C5  DOUB Y N 17 
13Y C7  C6  DOUB Y N 18 
13Y C26 N20 SING N N 19 
13Y C19 C17 SING N N 20 
13Y C24 C23 SING N N 21 
13Y C5  C6  SING Y N 22 
13Y C6  O8  SING N N 23 
13Y C16 C17 SING N N 24 
13Y C16 C15 SING N N 25 
13Y N20 C15 SING N N 26 
13Y N20 C22 SING N N 27 
13Y C17 C18 SING N N 28 
13Y C23 C22 SING N N 29 
13Y O8  C9  SING N N 30 
13Y C14 C9  DOUB Y N 31 
13Y C14 C13 SING Y N 32 
13Y C15 C13 SING N N 33 
13Y C9  C10 SING Y N 34 
13Y C13 C12 DOUB Y N 35 
13Y C10 C11 DOUB Y N 36 
13Y C10 C37 SING N N 37 
13Y C12 C11 SING Y N 38 
13Y O39 C37 DOUB N N 39 
13Y C37 O38 SING N N 40 
13Y C4  H1  SING N N 41 
13Y C5  H2  SING N N 42 
13Y C3  H3  SING N N 43 
13Y C7  H4  SING N N 44 
13Y C11 H5  SING N N 45 
13Y C12 H6  SING N N 46 
13Y C14 H7  SING N N 47 
13Y C15 H8  SING N N 48 
13Y C16 H9  SING N N 49 
13Y C16 H10 SING N N 50 
13Y C17 H11 SING N N 51 
13Y C18 H12 SING N N 52 
13Y C18 H13 SING N N 53 
13Y C18 H14 SING N N 54 
13Y C19 H15 SING N N 55 
13Y C19 H16 SING N N 56 
13Y C19 H17 SING N N 57 
13Y C22 H19 SING N N 58 
13Y C22 H20 SING N N 59 
13Y C23 H21 SING N N 60 
13Y C23 H22 SING N N 61 
13Y C24 H23 SING N N 62 
13Y C24 H24 SING N N 63 
13Y C25 H25 SING N N 64 
13Y C26 H26 SING N N 65 
13Y C26 H27 SING N N 66 
13Y C28 H28 SING N N 67 
13Y N32 H29 SING N N 68 
13Y C36 H30 SING N N 69 
13Y C36 H31 SING N N 70 
13Y C36 H32 SING N N 71 
13Y O38 H33 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
13Y SMILES           ACDLabs              12.01 "O=C(O)c2ccc(cc2Oc1cccc(Cl)c1)C(N4CCCC(N3C=C(C(=O)NC3=O)C)C4)CC(C)C" 
13Y InChI            InChI                1.03  
"InChI=1S/C28H32ClN3O5/c1-17(2)12-24(31-11-5-7-21(16-31)32-15-18(3)26(33)30-28(32)36)19-9-10-23(27(34)35)25(13-19)37-22-8-4-6-20(29)14-22/h4,6,8-10,13-15,17,21,24H,5,7,11-12,16H2,1-3H3,(H,34,35)(H,30,33,36)/t21-,24+/m0/s1" 
13Y InChIKey         InChI                1.03  DUMBOKZAFBZKLT-XUZZJYLKSA-N 
13Y SMILES_CANONICAL CACTVS               3.370 "CC(C)C[C@@H](N1CCC[C@@H](C1)N2C=C(C)C(=O)NC2=O)c3ccc(C(O)=O)c(Oc4cccc(Cl)c4)c3" 
13Y SMILES           CACTVS               3.370 "CC(C)C[CH](N1CCC[CH](C1)N2C=C(C)C(=O)NC2=O)c3ccc(C(O)=O)c(Oc4cccc(Cl)c4)c3" 
13Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)[C@H]2CCCN(C2)[C@H](CC(C)C)c3ccc(c(c3)Oc4cccc(c4)Cl)C(=O)O" 
13Y SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)C2CCCN(C2)C(CC(C)C)c3ccc(c(c3)Oc4cccc(c4)Cl)C(=O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
13Y "SYSTEMATIC NAME" ACDLabs              12.01 "2-(3-chlorophenoxy)-4-{(1R)-3-methyl-1-[(3S)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)piperidin-1-yl]butyl}benzoic acid" 
13Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-(3-chloranylphenoxy)-4-[(1R)-3-methyl-1-[(3S)-3-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]piperidin-1-yl]butyl]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
13Y "Create component" 2012-10-04 RCSB 
13Y "Initial release"  2012-10-19 RCSB 
# 
