data_0QY
# 
_chem_comp.id                                    0QY 
_chem_comp.name                                  "N-[2-(1H-indol-3-ylmethyl)-1H-benzimidazol-5-yl]-L-prolinamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H21 N5 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-04-18 
_chem_comp.pdbx_modified_date                    2012-05-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        359.424 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0QY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4EPY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0QY O01 O01 O 0 1 N N N 25.287 -8.202  13.074 -3.272 0.287  1.089  O01 0QY 1  
0QY C02 C02 C 0 1 N N N 24.746 -8.083  14.165 -3.957 -0.127 0.178  C02 0QY 2  
0QY C03 C03 C 0 1 N N S 24.390 -9.338  14.938 -5.278 0.528  -0.131 C03 0QY 3  
0QY N04 N04 N 0 1 N N N 23.691 -10.354 14.151 -5.704 1.392  1.000  N04 0QY 4  
0QY C05 C05 C 0 1 N N N 24.593 -11.460 13.989 -6.661 2.349  0.388  C05 0QY 5  
0QY C06 C06 C 0 1 N N N 25.510 -11.415 15.159 -6.044 2.693  -0.984 C06 0QY 6  
0QY C07 C07 C 0 1 N N N 25.620 -9.971  15.493 -5.134 1.495  -1.326 C07 0QY 7  
0QY N08 N08 N 0 1 N N N 24.421 -6.792  14.753 -3.533 -1.170 -0.563 N08 0QY 8  
0QY C09 C09 C 0 1 Y N N 24.722 -5.485  14.157 -2.255 -1.705 -0.353 C09 0QY 9  
0QY C10 C10 C 0 1 Y N N 24.846 -4.300  15.001 -2.038 -3.070 -0.528 C10 0QY 10 
0QY C11 C11 C 0 1 Y N N 25.158 -2.981  14.414 -0.787 -3.609 -0.324 C11 0QY 11 
0QY C12 C12 C 0 1 Y N N 24.935 -5.346  12.692 -1.215 -0.875 0.020  C12 0QY 12 
0QY C13 C13 C 0 1 Y N N 25.268 -3.967  12.076 0.058  -1.410 0.229  C13 0QY 13 
0QY C14 C14 C 0 1 Y N N 25.373 -2.850  12.885 0.266  -2.789 0.057  C14 0QY 14 
0QY N15 N15 N 0 1 Y N N 25.672 -1.776  12.089 1.603  -3.009 0.332  N15 0QY 15 
0QY C16 C16 C 0 1 Y N N 25.751 -2.224  10.781 2.154  -1.808 0.651  C16 0QY 16 
0QY C17 C17 C 0 1 N N N 26.068 -1.384  9.563  3.598  -1.590 1.021  C17 0QY 17 
0QY C18 C18 C 0 1 Y N N 24.846 -1.138  8.726  4.196  -0.543 0.118  C18 0QY 18 
0QY C19 C19 C 0 1 Y N N 24.450 -1.861  7.600  4.883  -0.762 -1.014 C19 0QY 19 
0QY N20 N20 N 0 1 Y N N 23.273 -1.300  7.124  5.264  0.431  -1.567 N20 0QY 20 
0QY C21 C21 C 0 1 Y N N 22.943 -0.226  7.951  4.821  1.473  -0.784 C21 0QY 21 
0QY C22 C22 C 0 1 Y N N 21.766 0.768   7.931  4.928  2.856  -0.880 C22 0QY 22 
0QY C23 C23 C 0 1 Y N N 21.684 1.822   8.963  4.361  3.655  0.089  C23 0QY 23 
0QY C24 C24 C 0 1 Y N N 22.706 1.929   9.997  3.683  3.094  1.162  C24 0QY 24 
0QY C25 C25 C 0 1 Y N N 23.833 0.973   10.016 3.566  1.738  1.276  C25 0QY 25 
0QY C26 C26 C 0 1 Y N N 23.916 -0.127  8.939  4.132  0.909  0.306  C26 0QY 26 
0QY N27 N27 N 0 1 Y N N 25.505 -3.578  10.781 1.251  -0.872 0.592  N27 0QY 27 
0QY H1  H1  H 0 1 N N N 23.746 -9.044  15.780 -6.036 -0.226 -0.342 H1  0QY 28 
0QY H2  H2  H 0 1 N N N 23.440 -9.982  13.257 -4.916 1.877  1.402  H2  0QY 29 
0QY H4  H4  H 0 1 N N N 24.036 -12.409 13.976 -7.637 1.881  0.259  H4  0QY 30 
0QY H5  H5  H 0 1 N N N 25.162 -11.356 13.053 -6.747 3.246  1.002  H5  0QY 31 
0QY H6  H6  H 0 1 N N N 25.089 -11.978 16.005 -6.826 2.800  -1.735 H6  0QY 32 
0QY H7  H7  H 0 1 N N N 26.495 -11.829 14.897 -5.456 3.608  -0.916 H7  0QY 33 
0QY H8  H8  H 0 1 N N N 26.518 -9.537  15.030 -4.099 1.822  -1.425 H8  0QY 34 
0QY H9  H9  H 0 1 N N N 25.666 -9.831  16.583 -5.469 1.014  -2.244 H9  0QY 35 
0QY H10 H10 H 0 1 N N N 23.954 -6.796  15.637 -4.112 -1.550 -1.242 H10 0QY 36 
0QY H11 H11 H 0 1 N N N 24.708 -4.389  16.068 -2.856 -3.710 -0.824 H11 0QY 37 
0QY H12 H12 H 0 1 N N N 25.236 -2.111  15.049 -0.626 -4.668 -0.460 H12 0QY 38 
0QY H13 H13 H 0 1 N N N 24.857 -6.214  12.054 -1.386 0.184  0.150  H13 0QY 39 
0QY H14 H14 H 0 1 N N N 25.809 -0.835  12.398 2.063  -3.863 0.302  H14 0QY 40 
0QY H15 H15 H 0 1 N N N 26.818 -1.909  8.953  3.662  -1.257 2.057  H15 0QY 41 
0QY H16 H16 H 0 1 N N N 26.475 -0.417  9.893  4.147  -2.525 0.906  H16 0QY 42 
0QY H17 H17 H 0 1 N N N 24.968 -2.708  7.174  5.102  -1.735 -1.427 H17 0QY 43 
0QY H18 H18 H 0 1 N N N 22.753 -1.611  6.328  5.772  0.527  -2.388 H18 0QY 44 
0QY H19 H19 H 0 1 N N N 21.006 0.695   7.167  5.454  3.302  -1.711 H19 0QY 45 
0QY H20 H20 H 0 1 N N N 20.860 2.519   8.951  4.446  4.729  0.013  H20 0QY 46 
0QY H21 H21 H 0 1 N N N 22.640 2.704   10.746 3.245  3.735  1.913  H21 0QY 47 
0QY H22 H22 H 0 1 N N N 24.594 1.045   10.779 3.037  1.308  2.114  H22 0QY 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0QY N20 C19 SING Y N 1  
0QY N20 C21 SING Y N 2  
0QY C19 C18 DOUB Y N 3  
0QY C22 C21 DOUB Y N 4  
0QY C22 C23 SING Y N 5  
0QY C21 C26 SING Y N 6  
0QY C18 C26 SING Y N 7  
0QY C18 C17 SING N N 8  
0QY C26 C25 DOUB Y N 9  
0QY C23 C24 DOUB Y N 10 
0QY C17 C16 SING N N 11 
0QY C24 C25 SING Y N 12 
0QY N27 C16 DOUB Y N 13 
0QY N27 C13 SING Y N 14 
0QY C16 N15 SING Y N 15 
0QY C13 C12 DOUB Y N 16 
0QY C13 C14 SING Y N 17 
0QY N15 C14 SING Y N 18 
0QY C12 C09 SING Y N 19 
0QY C14 C11 DOUB Y N 20 
0QY O01 C02 DOUB N N 21 
0QY C05 N04 SING N N 22 
0QY C05 C06 SING N N 23 
0QY N04 C03 SING N N 24 
0QY C09 N08 SING N N 25 
0QY C09 C10 DOUB Y N 26 
0QY C02 N08 SING N N 27 
0QY C02 C03 SING N N 28 
0QY C11 C10 SING Y N 29 
0QY C03 C07 SING N N 30 
0QY C06 C07 SING N N 31 
0QY C03 H1  SING N N 32 
0QY N04 H2  SING N N 33 
0QY C05 H4  SING N N 34 
0QY C05 H5  SING N N 35 
0QY C06 H6  SING N N 36 
0QY C06 H7  SING N N 37 
0QY C07 H8  SING N N 38 
0QY C07 H9  SING N N 39 
0QY N08 H10 SING N N 40 
0QY C10 H11 SING N N 41 
0QY C11 H12 SING N N 42 
0QY C12 H13 SING N N 43 
0QY N15 H14 SING N N 44 
0QY C17 H15 SING N N 45 
0QY C17 H16 SING N N 46 
0QY C19 H17 SING N N 47 
0QY N20 H18 SING N N 48 
0QY C22 H19 SING N N 49 
0QY C23 H20 SING N N 50 
0QY C24 H21 SING N N 51 
0QY C25 H22 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0QY SMILES           ACDLabs              12.01 "O=C(Nc2ccc1nc(nc1c2)Cc4c3ccccc3nc4)C5NCCC5"                                                                                                                                       
0QY InChI            InChI                1.03  "InChI=1S/C21H21N5O/c27-21(18-6-3-9-22-18)24-14-7-8-17-19(11-14)26-20(25-17)10-13-12-23-16-5-2-1-4-15(13)16/h1-2,4-5,7-8,11-12,18,22-23H,3,6,9-10H2,(H,24,27)(H,25,26)/t18-/m0/s1" 
0QY InChIKey         InChI                1.03  FSUGJBWDOIVSMH-SFHVURJKSA-N                                                                                                                                                        
0QY SMILES_CANONICAL CACTVS               3.370 "O=C(Nc1ccc2[nH]c(Cc3c[nH]c4ccccc34)nc2c1)[C@@H]5CCCN5"                                                                                                                            
0QY SMILES           CACTVS               3.370 "O=C(Nc1ccc2[nH]c(Cc3c[nH]c4ccccc34)nc2c1)[CH]5CCCN5"                                                                                                                              
0QY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)c(c[nH]2)Cc3[nH]c4ccc(cc4n3)NC(=O)[C@@H]5CCCN5"                                                                                                                        
0QY SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)c(c[nH]2)Cc3[nH]c4ccc(cc4n3)NC(=O)C5CCCN5"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0QY "SYSTEMATIC NAME" ACDLabs              12.01 "N-[2-(1H-indol-3-ylmethyl)-1H-benzimidazol-5-yl]-L-prolinamide"                 
0QY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-N-[2-(1H-indol-3-ylmethyl)-1H-benzimidazol-5-yl]pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0QY "Create component" 2012-04-18 RCSB 
# 
