data_0DY
#

_chem_comp.id                                   0DY
_chem_comp.name                                 "N~1~-(3-aminobenzyl)-N~2~-[(2R)-2-(hydroxycarbamoyl)-4-methylpentanoyl]-L-aspartamide"
_chem_comp.type                                 peptide-like
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H27 N5 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "HONH-iBM-Asn-NHBn(m-NH2)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-11-07
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       393.437
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    0DY
_chem_comp.pdbx_model_coordinates_details       "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1A85
_chem_comp.pdbx_subcomponent_list               "HMI ASN DBP"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0DY  N     N1   N  0  1  N  N  N  25.697  59.973  53.918   5.060  -1.095   1.527  N     HMI   1  
0DY  OH    O1   O  0  1  N  N  N  24.724  58.994  54.017   5.581  -2.402   1.693  OH    HMI   2  
0DY  C1    C1   C  0  1  N  N  N  26.992  59.633  53.901   4.250  -0.820   0.485  C1    HMI   3  
0DY  O1    O2   O  0  1  N  N  N  27.389  58.441  53.948   4.041  -1.665  -0.359  O1    HMI   4  
0DY  CA    C2   C  0  1  N  N  R  27.937  60.755  53.438   3.606   0.537   0.370  CA    HMI   5  
0DY  CB    C3   C  0  1  N  N  N  29.227  60.870  54.309   4.463   1.434  -0.526  CB    HMI   6  
0DY  CG    C4   C  0  1  N  N  N  30.099  62.106  54.126   3.914   2.862  -0.492  CG    HMI   7  
0DY  CD1   C5   C  0  1  N  N  N  29.775  63.073  55.243   3.972   3.397   0.940  CD1   HMI   8  
0DY  CD2   C6   C  0  1  N  N  N  31.553  61.693  54.166   4.758   3.754  -1.404  CD2   HMI   9  
0DY  C     C7   C  0  1  N  N  N  28.279  60.497  51.986   2.232   0.391  -0.233  C     HMI  10  
0DY  O     O3   O  0  1  N  N  N  27.804  61.206  51.098   2.027   0.758  -1.371  O     HMI  11  
0DY  N1    N2   N  0  1  N  N  N  29.089  59.486  51.721   1.232  -0.147   0.492  N     ASN  12  
0DY  CA1   C8   C  0  1  N  N  R  29.443  59.233  50.336  -0.085  -0.352  -0.116  CA    ASN  13  
0DY  C2    C9   C  0  1  N  N  N  28.350  58.408  49.630  -1.158   0.067   0.857  C     ASN  14  
0DY  O2    O5   O  0  1  N  N  N  28.501  58.028  48.459  -0.852   0.495   1.949  O     ASN  15  
0DY  CB1   C10  C  0  1  N  N  N  30.799  58.559  50.213  -0.262  -1.832  -0.463  CB    ASN  16  
0DY  CG1   C11  C  0  1  N  N  N  31.220  58.371  48.754   0.714  -2.213  -1.547  CG    ASN  17  
0DY  OD1   O6   O  0  1  N  N  N  31.567  57.266  48.361   1.396  -1.361  -2.076  OD1   ASN  18  
0DY  ND2   N3   N  0  1  N  N  N  31.230  59.458  47.956   0.829  -3.501  -1.928  ND2   ASN  19  
0DY  N2    N4   N  0  1  N  N  N  27.292  58.069  50.374  -2.457  -0.034   0.511  N     DBP  20  
0DY  CB2   C12  C  0  1  N  N  N  26.143  57.342  49.848  -3.500   0.373   1.456  CB    DBP  21  
0DY  CG2   C13  C  0  1  Y  N  N  26.056  55.924  49.388  -4.854   0.162   0.831  CG    DBP  22  
0DY  CD11  C14  C  0  0  Y  N  N  26.846  54.916  49.995  -5.507  -1.047   0.989  CD1   DBP  23  
0DY  CE1   C15  C  0  1  Y  N  N  26.685  53.572  49.681  -6.750  -1.245   0.417  CE1   DBP  24  
0DY  CD21  C16  C  0  0  Y  N  N  25.111  55.557  48.427  -5.445   1.178   0.106  CD2   DBP  25  
0DY  CE2   C17  C  0  1  Y  N  N  24.948  54.209  48.114  -6.694   0.983  -0.470  CE2   DBP  26  
0DY  CZ    C18  C  0  1  Y  N  N  25.730  53.213  48.724  -7.344  -0.235  -0.315  CZ    DBP  27  
0DY  NE2   N5   N  0  1  N  N  N  23.980  53.909  47.273  -7.294   2.008  -1.204  NE2   DBP  28  
0DY  HN    H1   H  0  1  N  N  N  25.433  60.936  53.859   5.283  -0.400   2.165  HN    HMI  29  
0DY  HOH   H2   H  0  1  N  N  N  24.501  58.680  53.149   6.151  -2.502   2.468  HOH   HMI  30  
0DY  HA    H3   H  0  1  N  N  N  27.425  61.721  53.555   3.523   0.985   1.360  HA    HMI  31  
0DY  HB1   H4   H  0  1  N  N  N  28.903  60.863  55.360   5.491   1.432  -0.165  HB1   HMI  32  
0DY  HB2   H5   H  0  1  N  N  N  29.859  60.028  53.990   4.436   1.059  -1.549  HB2   HMI  33  
0DY  HG    H6   H  0  1  N  N  N  29.908  62.593  53.158   2.881   2.862  -0.839  HG    HMI  34  
0DY  HD11  H7   H  0  0  N  N  N  29.696  62.524  56.193   5.009   3.433   1.273  HD11  HMI  35  
0DY  HD12  H8   H  0  0  N  N  N  30.574  63.825  55.320   3.545   4.399   0.971  HD12  HMI  36  
0DY  HD13  H9   H  0  0  N  N  N  28.819  63.573  55.029   3.402   2.739   1.597  HD13  HMI  37  
0DY  HD21  H10  H  0  0  N  N  N  31.935  61.593  53.139   4.717   3.373  -2.424  HD21  HMI  38  
0DY  HD22  H11  H  0  0  N  N  N  32.136  62.457  54.701   4.367   4.772  -1.380  HD22  HMI  39  
0DY  HD23  H12  H  0  0  N  N  N  31.646  60.729  54.687   5.792   3.754  -1.058  HD23  HMI  40  
0DY  H     H14  H  0  1  N  N  N  29.448  58.911  52.456   1.384  -0.398   1.417  H     ASN  41  
0DY  HA1   H16  H  0  1  N  N  N  29.517  60.209  49.833  -0.164   0.246  -1.023  HA    ASN  42  
0DY  HB21  H17  H  0  0  N  N  N  31.549  59.187  50.716  -0.075  -2.438   0.424  HB2   ASN  43  
0DY  HB3   H18  H  0  1  N  N  N  30.727  57.564  50.676  -1.279  -2.004  -0.813  HB3   ASN  44  
0DY  HD24  H19  H  0  0  N  N  N  30.929  60.258  48.476   0.283  -4.182  -1.504  HD21  ASN  45  
0DY  HD25  H20  H  0  0  N  N  N  31.498  59.464  46.993   1.457  -3.746  -2.625  HD22  ASN  46  
0DY  HN1   H22  H  0  1  N  N  N  27.289  58.327  51.340  -2.701  -0.376  -0.363  HN1   DBP  47  
0DY  HB11  H24  H  0  0  N  N  N  25.414  57.388  50.671  -3.421  -0.225   2.364  HB11  DBP  48  
0DY  HB22  H25  H  0  0  N  N  N  26.061  57.841  48.871  -3.374   1.427   1.704  HB21  DBP  49  
0DY  HD14  H26  H  0  0  N  N  N  27.593  55.200  50.721  -5.044  -1.838   1.560  HD11  DBP  50  
0DY  HC11  H27  H  0  0  N  N  N  27.286  52.818  50.167  -7.257  -2.190   0.541  HC11  DBP  51  
0DY  HC21  H28  H  0  0  N  N  N  24.514  56.309  47.933  -4.937   2.124  -0.013  HC21  DBP  52  
0DY  HCZ1  H29  H  0  0  N  N  N  25.594  52.176  48.455  -8.315  -0.391  -0.762  HCZ1  DBP  53  
0DY  HE21  H30  H  0  0  N  N  N  23.116  53.833  47.771  -6.839   2.858  -1.312  HE21  DBP  54  
0DY  HE22  H31  H  0  0  N  N  N  23.904  54.628  46.582  -8.167   1.870  -1.606  HE22  DBP  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0DY  N     OH    SING  N  N   1  
0DY  N     C1    SING  N  N   2  
0DY  N     HN    SING  N  N   3  
0DY  OH    HOH   SING  N  N   4  
0DY  C1    O1    DOUB  N  N   5  
0DY  C1    CA    SING  N  N   6  
0DY  CA    CB    SING  N  N   7  
0DY  CA    C     SING  N  N   8  
0DY  CA    HA    SING  N  N   9  
0DY  CB    CG    SING  N  N  10  
0DY  CB    HB1   SING  N  N  11  
0DY  CB    HB2   SING  N  N  12  
0DY  CG    CD1   SING  N  N  13  
0DY  CG    CD2   SING  N  N  14  
0DY  CG    HG    SING  N  N  15  
0DY  CD1   HD11  SING  N  N  16  
0DY  CD1   HD12  SING  N  N  17  
0DY  CD1   HD13  SING  N  N  18  
0DY  CD2   HD21  SING  N  N  19  
0DY  CD2   HD22  SING  N  N  20  
0DY  CD2   HD23  SING  N  N  21  
0DY  C     O     DOUB  N  N  22  
0DY  N1    CA1   SING  N  N  23  
0DY  N1    H     SING  N  N  24  
0DY  CA1   C2    SING  N  N  25  
0DY  CA1   CB1   SING  N  N  26  
0DY  CA1   HA1   SING  N  N  27  
0DY  C2    O2    DOUB  N  N  28  
0DY  CB1   CG1   SING  N  N  29  
0DY  CB1   HB21  SING  N  N  30  
0DY  CB1   HB3   SING  N  N  31  
0DY  CG1   OD1   DOUB  N  N  32  
0DY  CG1   ND2   SING  N  N  33  
0DY  ND2   HD24  SING  N  N  34  
0DY  ND2   HD25  SING  N  N  35  
0DY  N2    CB2   SING  N  N  36  
0DY  N2    HN1   SING  N  N  37  
0DY  CB2   CG2   SING  N  N  38  
0DY  CB2   HB11  SING  N  N  39  
0DY  CB2   HB22  SING  N  N  40  
0DY  CG2   CD11  DOUB  Y  N  41  
0DY  CG2   CD21  SING  Y  N  42  
0DY  CD11  CE1   SING  Y  N  43  
0DY  CD11  HD14  SING  N  N  44  
0DY  CE1   CZ    DOUB  Y  N  45  
0DY  CE1   HC11  SING  N  N  46  
0DY  CD21  CE2   DOUB  Y  N  47  
0DY  CD21  HC21  SING  N  N  48  
0DY  CE2   CZ    SING  Y  N  49  
0DY  CE2   NE2   SING  N  N  50  
0DY  CZ    HCZ1  SING  N  N  51  
0DY  NE2   HE21  SING  N  N  52  
0DY  NE2   HE22  SING  N  N  53  
0DY  C     N1    SING  N  N  54  
0DY  C2    N2    SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0DY  SMILES            ACDLabs  10.04  "O=C(NO)C(C(=O)NC(C(=O)NCc1cc(N)ccc1)CC(=O)N)CC(C)C"  
0DY  SMILES_CANONICAL  CACTVS   3.352  "CC(C)C[C@@H](C(=O)NO)C(=O)N[C@H](CC(N)=O)C(=O)NCc1cccc(N)c1"  
0DY  SMILES            CACTVS   3.352  "CC(C)C[CH](C(=O)NO)C(=O)N[CH](CC(N)=O)C(=O)NCc1cccc(N)c1"  
0DY  InChI             InChI     1.03  "InChI=1S/C18H27N5O5/c1-10(2)6-13(17(26)23-28)16(25)22-14(8-15(20)24)18(27)21-9-11-4-3-5-12(19)7-11/h3-5,7,10,13-14,28H,6,8-9,19H2,1-2H3,(H2,20,24)(H,21,27)(H,22,25)(H,23,26)/t13-,14-/m0/s1"  
0DY  InChIKey          InChI     1.03  LYVDOPZAZLWTSE-KBPBESRZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0DY  "SYSTEMATIC NAME"  ACDLabs               10.04  "N~1~-(3-aminobenzyl)-N~2~-[(2R)-2-(hydroxycarbamoyl)-4-methylpentanoyl]-L-aspartamide"  
0DY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(2S)-N-[(2S)-4-amino-1-[(3-aminophenyl)methylamino]-1,4-dioxo-butan-2-yl]-N'-hydroxy-2-(2-methylpropyl)propanediamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0DY  "Create component"      2008-11-07  RCSB  
0DY  "Modify aromatic_flag"  2011-06-04  RCSB  
0DY  "Modify descriptor"     2011-06-04  RCSB  
0DY  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     0DY
_pdbx_chem_comp_synonyms.name        "HONH-iBM-Asn-NHBn(m-NH2)"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
