data_09Y
#

_chem_comp.id                                   09Y
_chem_comp.name                                 "5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H20 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-06-07
_chem_comp.pdbx_modified_date                   2022-06-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       380.397
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    09Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7N47
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
09Y  C14  C1   C  0  1  N  N  N  -6.148  29.264  -18.028   3.983  -2.392   0.132  C14  09Y   1  
09Y  C19  C2   C  0  1  Y  N  N  -7.430  31.695  -15.209   4.145   1.300   0.113  C19  09Y   2  
09Y  C20  C3   C  0  1  Y  N  N  -8.178  31.114  -14.199   5.508   1.506   0.333  C20  09Y   3  
09Y  C01  C4   C  0  1  N  N  N  -4.677  34.020  -12.453  -8.453   0.282   1.439  C01  09Y   4  
09Y  C03  C5   C  0  1  Y  N  N  -3.557  32.181  -11.518  -6.263   0.469   0.538  C03  09Y   5  
09Y  C04  C6   C  0  1  Y  N  N  -2.369  31.927  -12.180  -4.886   0.594   0.674  C04  09Y   6  
09Y  C05  C7   C  0  1  Y  N  N  -1.928  30.624  -12.355  -4.100   0.647  -0.463  C05  09Y   7  
09Y  C06  C8   C  0  1  N  N  N  -0.625  30.317  -13.083  -2.602   0.782  -0.359  C06  09Y   8  
09Y  C07  C9   C  0  1  N  N  N  -0.797  30.351  -14.598  -1.968  -0.609  -0.302  C07  09Y   9  
09Y  C09  C10  C  0  1  N  N  N  -2.679  29.874  -16.186   0.260  -1.581  -0.137  C09  09Y  10  
09Y  C11  C11  C  0  1  N  N  N  -4.162  29.950  -16.531   1.732  -1.449  -0.034  C11  09Y  11  
09Y  C12  C12  C  0  1  N  N  N  -4.696  29.187  -17.694   2.531  -2.581   0.032  C12  09Y  12  
09Y  C17  C13  C  0  1  N  N  N  -6.498  30.837  -16.059   3.597  -0.073   0.085  C17  09Y  13  
09Y  C21  C14  C  0  1  Y  N  N  -9.022  31.894  -13.428   6.014   2.789   0.358  C21  09Y  14  
09Y  C22  C15  C  0  1  Y  N  N  -9.118  33.255  -13.667   5.173   3.871   0.164  C22  09Y  15  
09Y  C23  C16  C  0  1  Y  N  N  -8.369  33.837  -14.677   3.821   3.674  -0.056  C23  09Y  16  
09Y  C24  C17  C  0  1  Y  N  N  -7.525  33.057  -15.448   3.302   2.395  -0.076  C24  09Y  17  
09Y  C25  C18  C  0  1  N  N  N  -6.699  33.695  -16.560   1.829   2.183  -0.316  C25  09Y  18  
09Y  C26  C19  C  0  1  Y  N  N  -2.717  29.613  -11.836  -4.721   0.573  -1.703  C26  09Y  19  
09Y  C27  C20  C  0  1  Y  N  N  -3.892  29.933  -11.180  -6.095   0.449  -1.763  C27  09Y  20  
09Y  N08  N1   N  0  1  N  N  N  -2.205  30.422  -14.933  -0.512  -0.479  -0.201  N08  09Y  21  
09Y  N16  N2   N  0  1  N  N  N  -7.036  30.079  -17.220   4.459  -1.128   0.155  N16  09Y  22  
09Y  N18  N3   N  0  1  N  N  N  -5.053  30.763  -15.724   2.299  -0.233  -0.004  N18  09Y  23  
09Y  N28  N4   N  0  1  Y  N  N  -4.283  31.188  -11.035  -6.818   0.396  -0.660  N28  09Y  24  
09Y  O02  O1   O  0  1  N  N  N  -3.982  33.505  -11.353  -7.046   0.416   1.645  O02  09Y  25  
09Y  O10  O2   O  0  1  N  N  N  -1.915  29.365  -16.935  -0.250  -2.684  -0.163  O10  09Y  26  
09Y  O13  O3   O  0  1  N  N  N  -3.835  28.403  -18.471   1.987  -3.823   0.004  O13  09Y  27  
09Y  O15  O4   O  0  1  N  N  N  -6.574  28.659  -18.953   4.737  -3.348   0.198  O15  09Y  28  
09Y  H1   H1   H  0  1  N  N  N  -8.103  30.053  -14.013   6.166   0.662   0.485  H1   09Y  29  
09Y  H2   H2   H  0  1  N  N  N  -4.975  35.058  -12.246  -8.961   0.252   2.403  H2   09Y  30  
09Y  H3   H3   H  0  1  N  N  N  -4.028  33.995  -13.341  -8.819   1.131   0.862  H3   09Y  31  
09Y  H4   H4   H  0  1  N  N  N  -5.574  33.411  -12.637  -8.654  -0.641   0.894  H4   09Y  32  
09Y  H5   H5   H  0  1  N  N  N  -1.782  32.748  -12.563  -4.436   0.650   1.654  H5   09Y  33  
09Y  H6   H6   H  0  1  N  N  N  -0.280  29.315  -12.787  -2.224   1.318  -1.229  H6   09Y  34  
09Y  H7   H7   H  0  1  N  N  N   0.128  31.065  -12.794  -2.349   1.334   0.546  H7   09Y  35  
09Y  H8   H8   H  0  1  N  N  N  -0.364  29.439  -15.035  -2.346  -1.146   0.568  H8   09Y  36  
09Y  H9   H9   H  0  1  N  N  N  -0.281  31.233  -15.004  -2.221  -1.161  -1.207  H9   09Y  37  
09Y  H10  H10  H  0  1  N  N  N  -9.606  31.442  -12.640   7.068   2.950   0.529  H10  09Y  38  
09Y  H11  H11  H  0  1  N  N  N  -9.777  33.863  -13.065   5.573   4.873   0.184  H11  09Y  39  
09Y  H12  H12  H  0  1  N  N  N  -8.444  34.898  -14.862   3.170   4.522  -0.206  H12  09Y  40  
09Y  H13  H13  H  0  1  N  N  N  -7.272  33.677  -17.499   1.321   2.048   0.639  H13  09Y  41  
09Y  H14  H14  H  0  1  N  N  N  -6.466  34.736  -16.292   1.415   3.051  -0.828  H14  09Y  42  
09Y  H15  H15  H  0  1  N  N  N  -5.763  33.132  -16.691   1.686   1.295  -0.932  H15  09Y  43  
09Y  H16  H16  H  0  1  N  N  N  -2.418  28.581  -11.942  -4.136   0.612  -2.610  H16  09Y  44  
09Y  H17  H17  H  0  1  N  N  N  -4.504  29.140  -10.777  -6.583   0.392  -2.724  H17  09Y  45  
09Y  H18  H18  H  0  1  N  N  N  -2.849  30.850  -14.299  -0.105   0.401  -0.179  H18  09Y  46  
09Y  H19  H19  H  0  1  N  N  N  -8.009  30.131  -17.444   5.414  -0.970   0.221  H19  09Y  47  
09Y  H20  H20  H  0  1  N  N  N  -2.943  28.513  -18.164   2.637  -4.538   0.055  H20  09Y  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
09Y  O15  C14  DOUB  N  N   1  
09Y  O13  C12  SING  N  N   2  
09Y  C14  C12  SING  N  N   3  
09Y  C14  N16  SING  N  N   4  
09Y  C12  C11  DOUB  N  N   5  
09Y  N16  C17  SING  N  N   6  
09Y  O10  C09  DOUB  N  N   7  
09Y  C25  C24  SING  N  N   8  
09Y  C11  C09  SING  N  N   9  
09Y  C11  N18  SING  N  N  10  
09Y  C09  N08  SING  N  N  11  
09Y  C17  N18  DOUB  N  N  12  
09Y  C17  C19  SING  N  N  13  
09Y  C24  C19  DOUB  Y  N  14  
09Y  C24  C23  SING  Y  N  15  
09Y  C19  C20  SING  Y  N  16  
09Y  N08  C07  SING  N  N  17  
09Y  C23  C22  DOUB  Y  N  18  
09Y  C07  C06  SING  N  N  19  
09Y  C20  C21  DOUB  Y  N  20  
09Y  C22  C21  SING  Y  N  21  
09Y  C06  C05  SING  N  N  22  
09Y  C01  O02  SING  N  N  23  
09Y  C05  C04  DOUB  Y  N  24  
09Y  C05  C26  SING  Y  N  25  
09Y  C04  C03  SING  Y  N  26  
09Y  C26  C27  DOUB  Y  N  27  
09Y  C03  O02  SING  N  N  28  
09Y  C03  N28  DOUB  Y  N  29  
09Y  C27  N28  SING  Y  N  30  
09Y  C20  H1   SING  N  N  31  
09Y  C01  H2   SING  N  N  32  
09Y  C01  H3   SING  N  N  33  
09Y  C01  H4   SING  N  N  34  
09Y  C04  H5   SING  N  N  35  
09Y  C06  H6   SING  N  N  36  
09Y  C06  H7   SING  N  N  37  
09Y  C07  H8   SING  N  N  38  
09Y  C07  H9   SING  N  N  39  
09Y  C21  H10  SING  N  N  40  
09Y  C22  H11  SING  N  N  41  
09Y  C23  H12  SING  N  N  42  
09Y  C25  H13  SING  N  N  43  
09Y  C25  H14  SING  N  N  44  
09Y  C25  H15  SING  N  N  45  
09Y  C26  H16  SING  N  N  46  
09Y  C27  H17  SING  N  N  47  
09Y  N08  H18  SING  N  N  48  
09Y  N16  H19  SING  N  N  49  
09Y  O13  H20  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
09Y  SMILES            ACDLabs               12.01  "OC1=C(N=C(NC1=O)c1ccccc1C)C(=O)NCCc1ccnc(OC)c1"  
09Y  InChI             InChI                 1.03   "InChI=1S/C20H20N4O4/c1-12-5-3-4-6-14(12)18-23-16(17(25)20(27)24-18)19(26)22-10-8-13-7-9-21-15(11-13)28-2/h3-7,9,11,25H,8,10H2,1-2H3,(H,22,26)(H,23,24,27)"  
09Y  InChIKey          InChI                 1.03   NCYTYISCUURTPV-UHFFFAOYSA-N  
09Y  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C)ccn1"  
09Y  SMILES            CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C)ccn1"  
09Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1ccccc1C2=NC(=C(C(=O)N2)O)C(=O)NCCc3ccnc(c3)OC"  
09Y  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1ccccc1C2=NC(=C(C(=O)N2)O)C(=O)NCCc3ccnc(c3)OC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
09Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide"  
09Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-[2-(2-methoxypyridin-4-yl)ethyl]-2-(2-methylphenyl)-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
09Y  "Create component"  2021-06-07  RCSB  
09Y  "Initial release"   2022-06-08  RCSB  
##
