data_YBX
# 
_chem_comp.id                                    YBX 
_chem_comp.name                                  "(ethylsulfanyl)acetic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C4 H8 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-23 
_chem_comp.pdbx_modified_date                    2024-10-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        120.170 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YBX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FVL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YBX O1 O1 O 0 1 N N N Y N Y 20.104 20.711 -29.369 1.857  -1.193 -0.001 O1 YBX 1  
YBX C5 C1 C 0 1 N N N Y N Y 19.899 21.340 -30.423 1.866  0.016  -0.002 C5 YBX 2  
YBX C6 C2 C 0 1 N N N N N N 18.604 22.087 -30.693 0.566  0.779  -0.002 C6 YBX 3  
YBX S1 S1 S 0 1 N N N N N N 17.323 21.381 -29.644 -0.821 -0.390 0.000  S1 YBX 4  
YBX C7 C3 C 0 1 N N N N N N 16.027 20.881 -30.789 -2.272 0.699  -0.000 C7 YBX 5  
YBX C8 C4 C 0 1 N N N N N N 16.599 20.083 -31.959 -3.546 -0.149 0.001  C8 YBX 6  
YBX O2 O2 O 0 1 N Y N Y N Y 20.734 21.402 -31.439 3.033  0.678  0.002  O2 YBX 7  
YBX H1 H1 H 0 1 N N N N N N 18.733 23.154 -30.458 0.514  1.407  0.887  H1 YBX 8  
YBX H2 H2 H 0 1 N N N N N N 18.323 21.976 -31.751 0.513  1.405  -0.893 H2 YBX 9  
YBX H3 H3 H 0 1 N N N N N N 15.527 21.780 -31.179 -2.253 1.329  0.889  H3 YBX 10 
YBX H4 H4 H 0 1 N N N N N N 15.296 20.258 -30.253 -2.254 1.327  -0.891 H4 YBX 11 
YBX H5 H5 H 0 1 N N N N N N 15.784 19.793 -32.639 -3.564 -0.779 -0.888 H5 YBX 12 
YBX H6 H6 H 0 1 N N N N N N 17.328 20.702 -32.503 -3.563 -0.777 0.892  H6 YBX 13 
YBX H7 H7 H 0 1 N N N N N N 17.097 19.180 -31.578 -4.417 0.505  0.001  H7 YBX 14 
YBX H8 H8 H 0 1 N Y N Y N Y 21.512 20.894 -31.241 3.840  0.146  0.006  H8 YBX 15 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YBX C8 C7 SING N N 1  
YBX C7 S1 SING N N 2  
YBX C6 C5 SING N N 3  
YBX C6 S1 SING N N 4  
YBX C5 O1 DOUB N N 5  
YBX C5 O2 SING N N 6  
YBX C6 H1 SING N N 7  
YBX C6 H2 SING N N 8  
YBX C7 H3 SING N N 9  
YBX C7 H4 SING N N 10 
YBX C8 H5 SING N N 11 
YBX C8 H6 SING N N 12 
YBX C8 H7 SING N N 13 
YBX O2 H8 SING N N 14 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YBX SMILES           ACDLabs              12.01 "O=C(O)CSCC"                                         
YBX InChI            InChI                1.06  "InChI=1S/C4H8O2S/c1-2-7-3-4(5)6/h2-3H2,1H3,(H,5,6)" 
YBX InChIKey         InChI                1.06  VJIKFWJCVWFZIN-UHFFFAOYSA-N                          
YBX SMILES_CANONICAL CACTVS               3.385 "CCSCC(O)=O"                                         
YBX SMILES           CACTVS               3.385 "CCSCC(O)=O"                                         
YBX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCSCC(=O)O"                                         
YBX SMILES           "OpenEye OEToolkits" 2.0.7 "CCSCC(=O)O"                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YBX "SYSTEMATIC NAME" ACDLabs              12.01 "(ethylsulfanyl)acetic acid"   
YBX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-ethylsulfanylethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YBX "Create component" 2023-01-23 RCSB 
YBX "Modify backbone"  2023-11-03 PDBE 
YBX "Modify PCM"       2024-09-27 PDBE 
YBX "Initial release"  2024-10-16 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YBX 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               N-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
