data_Y4X
# 
_chem_comp.id                                    Y4X 
_chem_comp.name                                  "N-(1,3-benzothiazol-5-yl)-3,5-difluoro-Nalpha-[(5-hydroxy-1H-indol-3-yl)acetyl]-N-methyl-L-phenylalaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H22 F2 N4 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-20 
_chem_comp.pdbx_modified_date                    2024-12-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        520.550 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y4X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8V17 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y4X C16  C1  C 0 1 Y N N N N N 32.655 0.276  5.172  6.023  3.595  -1.168 C16  Y4X 1  
Y4X C11  C2  C 0 1 Y N N N N N 30.553 -0.511 4.183  5.756  1.683  0.253  C11  Y4X 2  
Y4X C12  C3  C 0 1 Y N N N N N 30.820 0.210  3.031  4.407  2.028  0.450  C12  Y4X 3  
Y4X C13  C4  C 0 1 Y N N N N N 32.005 0.988  2.939  3.880  3.166  -0.166 C13  Y4X 4  
Y4X C14  C5  C 0 1 Y N N N N N 32.916 1.020  4.013  4.688  3.940  -0.975 C14  Y4X 5  
Y4X C17  C6  C 0 1 Y N N N N N 31.496 -0.474 5.277  6.555  2.479  -0.562 C17  Y4X 6  
Y4X C01  C7  C 0 1 N N N N N N 30.274 -0.839 -5.821 -2.602 -1.580 -1.659 C01  Y4X 7  
Y4X N02  N1  N 0 1 N N N N N N 30.172 -1.504 -4.506 -2.968 -0.701 -0.545 N02  Y4X 8  
Y4X C03  C8  C 0 1 N N N N N N 29.274 -1.019 -3.533 -2.011 -0.199 0.259  C03  Y4X 9  
Y4X C04  C9  C 0 1 N N S N N N 29.263 -1.828 -2.232 -0.579 -0.637 0.092  C04  Y4X 10 
Y4X N05  N2  N 0 1 N N N N N N 29.020 -0.934 -1.118 0.260  0.047  1.078  N05  Y4X 11 
Y4X C06  C10 C 0 1 N N N N N N 30.024 -0.408 -0.285 1.574  0.229  0.836  C06  Y4X 12 
Y4X C07  C11 C 0 1 N N N N N N 29.533 0.534  0.812  2.437  0.934  1.851  C07  Y4X 13 
Y4X C08  C12 C 0 1 Y N N N N N 29.714 -0.027 2.213  3.853  1.007  1.342  C08  Y4X 14 
Y4X C09  C13 C 0 1 Y N N N N N 28.829 -0.895 2.849  4.846  0.147  1.619  C09  Y4X 15 
Y4X N10  N3  N 0 1 Y N N N N N 29.326 -1.157 4.011  5.991  0.534  0.978  N10  Y4X 16 
Y4X O15  O1  O 0 1 N N N N N N 34.076 1.814  3.931  4.177  5.043  -1.585 O15  Y4X 17 
Y4X O18  O2  O 0 1 N N N N N N 31.174 -0.696 -0.473 2.061  -0.174 -0.199 O18  Y4X 18 
Y4X C19  C14 C 0 1 N N N N N N 28.121 -2.818 -2.404 -0.481 -2.150 0.301  C19  Y4X 19 
Y4X C20  C15 C 0 1 Y N N N N N 28.157 -3.774 -1.218 0.926  -2.606 0.013  C20  Y4X 20 
Y4X C21  C16 C 0 1 Y N N N N N 27.576 -3.479 0.007  1.281  -2.987 -1.268 C21  Y4X 21 
Y4X C22  C17 C 0 1 Y N N N N N 27.634 -4.398 1.007  2.573  -3.407 -1.533 C22  Y4X 22 
Y4X F23  F1  F 0 1 N N N N N N 27.088 -3.990 2.159  2.919  -3.780 -2.785 F23  Y4X 23 
Y4X C24  C18 C 0 1 Y N N N N N 28.250 -5.626 0.886  3.511  -3.444 -0.516 C24  Y4X 24 
Y4X C25  C19 C 0 1 Y N N N N N 28.764 -5.906 -0.342 3.155  -3.062 0.766  C25  Y4X 25 
Y4X F26  F2  F 0 1 N N N N N N 29.388 -7.111 -0.533 4.070  -3.098 1.760  F26  Y4X 26 
Y4X C27  C20 C 0 1 Y N N N N N 28.775 -4.976 -1.384 1.863  -2.638 1.028  C27  Y4X 27 
Y4X O28  O3  O 0 1 N N N N N N 28.606 -0.039 -3.776 -2.302 0.606  1.119  O28  Y4X 28 
Y4X C29  C21 C 0 1 Y N N N N N 30.901 -2.697 -4.262 -4.313 -0.383 -0.317 C29  Y4X 29 
Y4X C30  C22 C 0 1 Y N N N N N 32.089 -2.684 -3.566 -4.744 0.917  -0.468 C30  Y4X 30 
Y4X C31  C23 C 0 1 Y N N N N N 32.774 -3.912 -3.397 -6.095 1.248  -0.241 C31  Y4X 31 
Y4X N32  N4  N 0 1 Y N N N N N 34.008 -3.961 -2.629 -6.712 2.442  -0.331 N32  Y4X 32 
Y4X C33  C24 C 0 1 Y N N N N N 34.460 -5.253 -2.617 -7.964 2.488  -0.071 C33  Y4X 33 
Y4X S34  S1  S 0 1 Y N N N N N 33.411 -6.320 -3.434 -8.574 0.950  0.346  S34  Y4X 34 
Y4X C35  C25 C 0 1 Y N N N N N 32.287 -5.119 -3.914 -6.979 0.232  0.138  C35  Y4X 35 
Y4X C36  C26 C 0 1 Y N N N N N 31.041 -5.119 -4.617 -6.528 -1.078 0.285  C36  Y4X 36 
Y4X C37  C27 C 0 1 Y N N N N N 30.381 -3.910 -4.797 -5.208 -1.385 0.056  C37  Y4X 37 
Y4X H161 H1  H 0 0 N N N N N N 33.362 0.288  5.988  6.647  4.207  -1.803 H161 Y4X 38 
Y4X H131 H2  H 0 0 N N N N N N 32.208 1.556  2.043  2.844  3.434  -0.017 H131 Y4X 39 
Y4X H171 H3  H 0 0 N N N N N N 31.296 -1.033 6.179  7.591  2.222  -0.719 H171 Y4X 40 
Y4X H011 H4  H 0 0 N N N N N N 31.022 -1.358 -6.438 -2.600 -2.616 -1.319 H011 Y4X 41 
Y4X H012 H5  H 0 0 N N N N N N 29.297 -0.871 -6.325 -3.325 -1.464 -2.466 H012 Y4X 42 
Y4X H013 H6  H 0 0 N N N N N N 30.579 0.208  -5.679 -1.609 -1.314 -2.020 H013 Y4X 43 
Y4X H041 H7  H 0 0 N N N N N N 30.216 -2.364 -2.113 -0.237 -0.386 -0.912 H041 Y4X 44 
Y4X H051 H8  H 0 0 N N N N N N 28.073 -0.673 -0.928 -0.129 0.370  1.906  H051 Y4X 45 
Y4X H072 H9  H 0 0 N N N N N N 28.463 0.730  0.650  2.057  1.942  2.014  H072 Y4X 46 
Y4X H071 H10 H 0 0 N N N N N N 30.094 1.477  0.739  2.416  0.382  2.791  H071 Y4X 47 
Y4X H091 H11 H 0 0 N N N N N N 27.902 -1.276 2.446  4.755  -0.721 2.255  H091 Y4X 48 
Y4X H101 H12 H 0 0 N N N N N N 28.892 -1.743 4.695  6.841  0.070  1.026  H101 Y4X 49 
Y4X H151 H13 H 0 0 N N N N N N 34.579 1.724  4.732  3.802  4.870  -2.460 H151 Y4X 50 
Y4X H192 H14 H 0 0 N N N N N N 27.160 -2.282 -2.425 -0.737 -2.392 1.332  H192 Y4X 51 
Y4X H191 H15 H 0 0 N N N N N N 28.249 -3.379 -3.342 -1.172 -2.655 -0.374 H191 Y4X 52 
Y4X H211 H16 H 0 0 N N N N N N 27.084 -2.531 0.164  0.549  -2.958 -2.061 H211 Y4X 53 
Y4X H241 H17 H 0 0 N N N N N N 28.320 -6.319 1.711  4.519  -3.772 -0.722 H241 Y4X 54 
Y4X H271 H18 H 0 0 N N N N N N 29.270 -5.209 -2.315 1.587  -2.336 2.027  H271 Y4X 55 
Y4X H301 H19 H 0 0 N N N N N N 32.486 -1.765 -3.161 -4.043 1.685  -0.761 H301 Y4X 56 
Y4X H331 H20 H 0 0 N N N N N N 35.380 -5.562 -2.142 -8.560 3.388  -0.110 H331 Y4X 57 
Y4X H361 H21 H 0 0 N N N N N N 30.623 -6.038 -4.999 -7.219 -1.855 0.578  H361 Y4X 58 
Y4X H371 H22 H 0 0 N N N N N N 29.456 -3.890 -5.353 -4.863 -2.403 0.167  H371 Y4X 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y4X N02 C01  SING N N 1  
Y4X C06 N05  SING N N 2  
Y4X C08 C07  SING N N 3  
Y4X C09 C08  DOUB Y N 4  
Y4X N10 C09  SING Y N 5  
Y4X C11 N10  SING Y N 6  
Y4X C12 C11  DOUB Y N 7  
Y4X C13 C12  SING Y N 8  
Y4X C14 C13  DOUB Y N 9  
Y4X O15 C14  SING N N 10 
Y4X C16 C14  SING Y N 11 
Y4X C17 C16  DOUB Y N 12 
Y4X C07 C06  SING N N 13 
Y4X O18 C06  DOUB N N 14 
Y4X N05 C04  SING N N 15 
Y4X C19 C04  SING N N 16 
Y4X C20 C19  SING N N 17 
Y4X C21 C20  DOUB Y N 18 
Y4X C22 C21  SING Y N 19 
Y4X F23 C22  SING N N 20 
Y4X C24 C22  DOUB Y N 21 
Y4X C25 C24  SING Y N 22 
Y4X F26 C25  SING N N 23 
Y4X C27 C25  DOUB Y N 24 
Y4X C04 C03  SING N N 25 
Y4X O28 C03  DOUB N N 26 
Y4X C03 N02  SING N N 27 
Y4X C29 N02  SING N N 28 
Y4X C30 C29  DOUB Y N 29 
Y4X C31 C30  SING Y N 30 
Y4X C33 N32  DOUB Y N 31 
Y4X S34 C33  SING Y N 32 
Y4X N32 C31  SING Y N 33 
Y4X C35 C31  DOUB Y N 34 
Y4X C36 C35  SING Y N 35 
Y4X C37 C36  DOUB Y N 36 
Y4X C08 C12  SING Y N 37 
Y4X C11 C17  SING Y N 38 
Y4X C20 C27  SING Y N 39 
Y4X C29 C37  SING Y N 40 
Y4X S34 C35  SING Y N 41 
Y4X C16 H161 SING N N 42 
Y4X C13 H131 SING N N 43 
Y4X C17 H171 SING N N 44 
Y4X C01 H011 SING N N 45 
Y4X C01 H012 SING N N 46 
Y4X C01 H013 SING N N 47 
Y4X C04 H041 SING N N 48 
Y4X N05 H051 SING N N 49 
Y4X C07 H072 SING N N 50 
Y4X C07 H071 SING N N 51 
Y4X C09 H091 SING N N 52 
Y4X N10 H101 SING N N 53 
Y4X O15 H151 SING N N 54 
Y4X C19 H192 SING N N 55 
Y4X C19 H191 SING N N 56 
Y4X C21 H211 SING N N 57 
Y4X C24 H241 SING N N 58 
Y4X C27 H271 SING N N 59 
Y4X C30 H301 SING N N 60 
Y4X C33 H331 SING N N 61 
Y4X C36 H361 SING N N 62 
Y4X C37 H371 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y4X SMILES           ACDLabs              12.01 "Oc1ccc2[NH]cc(CC(=O)NC(Cc3cc(F)cc(F)c3)C(=O)N(C)c3cc4ncsc4cc3)c2c1"                                                                                                                               
Y4X InChI            InChI                1.06  "InChI=1S/C27H22F2N4O3S/c1-33(19-2-5-25-23(11-19)31-14-37-25)27(36)24(8-15-6-17(28)10-18(29)7-15)32-26(35)9-16-13-30-22-4-3-20(34)12-21(16)22/h2-7,10-14,24,30,34H,8-9H2,1H3,(H,32,35)/t24-/m1/s1" 
Y4X InChIKey         InChI                1.06  ZEQNNGUVENPVCM-XMMPIXPASA-N                                                                                                                                                                        
Y4X SMILES_CANONICAL CACTVS               3.385 "CN(C(=O)[C@H](Cc1cc(F)cc(F)c1)NC(=O)Cc2c[nH]c3ccc(O)cc23)c4ccc5scnc5c4"                                                                                                                           
Y4X SMILES           CACTVS               3.385 "CN(C(=O)[CH](Cc1cc(F)cc(F)c1)NC(=O)Cc2c[nH]c3ccc(O)cc23)c4ccc5scnc5c4"                                                                                                                            
Y4X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(c1ccc2c(c1)ncs2)C(=O)[C@H](Cc3cc(cc(c3)F)F)NC(=O)Cc4c[nH]c5c4cc(cc5)O"                                                                                                                         
Y4X SMILES           "OpenEye OEToolkits" 2.0.7 "CN(c1ccc2c(c1)ncs2)C(=O)C(Cc3cc(cc(c3)F)F)NC(=O)Cc4c[nH]c5c4cc(cc5)O"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y4X "SYSTEMATIC NAME" ACDLabs              12.01 "N-(1,3-benzothiazol-5-yl)-3,5-difluoro-Nalpha-[(5-hydroxy-1H-indol-3-yl)acetyl]-N-methyl-L-phenylalaninamide"                              
Y4X "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-~{N}-(1,3-benzothiazol-5-yl)-3-[3,5-bis(fluoranyl)phenyl]-~{N}-methyl-2-[2-(5-oxidanyl-1~{H}-indol-3-yl)ethanoylamino]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y4X "Create component" 2023-11-20 RCSB 
Y4X "Initial release"  2024-12-11 RCSB 
# 
