data_X3X
#

_chem_comp.id                                   X3X
_chem_comp.name                                 "bis[(2S)-2,3-dihydroxypropyl] hydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C6 H15 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        diglycerolphosphate
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-10-14
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       246.152
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    X3X
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4N6K
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X3X  O3   O3   O  0  1  N  N  N  25.562  22.089  25.119  -6.009  -1.092  -0.440  O3   X3X   1  
X3X  C3   C3   C  0  1  N  N  N  25.686  23.413  24.596  -5.073  -0.055  -0.137  C3   X3X   2  
X3X  C2   C2   C  0  1  N  N  S  26.836  23.592  23.594  -3.654  -0.627  -0.156  C2   X3X   3  
X3X  O2   O2   O  0  1  N  N  N  26.868  22.576  22.634  -3.513  -1.583   0.897  O2   X3X   4  
X3X  C1   C1   C  0  1  N  N  N  28.137  23.641  24.333  -2.645   0.506   0.045  C1   X3X   5  
X3X  O1   O1   O  0  1  N  N  N  29.206  24.129  23.468  -1.319  -0.009  -0.088  O1   X3X   6  
X3X  PAO  PAO  P  0  1  N  N  N  30.387  24.953  24.180  -0.003   0.907   0.062  PAO  X3X   7  
X3X  OAF  OAF  O  0  1  N  N  N  30.614  24.454  25.573   0.034   1.992  -1.127  OAF  X3X   8  
X3X  OAA  OAA  O  0  1  N  N  N  31.502  24.867  23.259  -0.035   1.606   1.366  OAA  X3X   9  
X3X  O6   O6   O  0  1  N  N  N  29.865  26.394  24.307   1.309  -0.022  -0.018  O6   X3X  10  
X3X  C6   C6   C  0  1  N  N  N  29.544  27.122  23.097   2.632   0.481   0.186  C6   X3X  11  
X3X  C5   C5   C  0  1  N  N  S  29.699  28.615  23.292   3.639  -0.661   0.041  C5   X3X  12  
X3X  O5   O5   O  0  1  N  N  N  29.083  29.273  22.173   3.621  -1.143  -1.305  O5   X3X  13  
X3X  C4   C4   C  0  1  N  N  N  29.213  29.159  24.648   5.041  -0.151   0.381  C4   X3X  14  
X3X  O4   O4   O  0  1  N  N  N  29.310  30.586  24.820   5.963  -1.243   0.358  O4   X3X  15  
X3X  H1   H1   H  0  1  N  N  N  24.834  22.056  25.728  -6.931  -0.800  -0.446  H1   X3X  16  
X3X  H2   H2   H  0  1  N  N  N  25.852  24.102  25.438  -5.155   0.737  -0.882  H2   X3X  17  
X3X  H3   H3   H  0  1  N  N  N  24.745  23.673  24.090  -5.288   0.352   0.851  H3   X3X  18  
X3X  H4   H4   H  0  1  N  N  N  26.692  24.561  23.094  -3.470  -1.112  -1.114  H4   X3X  19  
X3X  H5   H5   H  0  1  N  N  N  26.039  22.552  22.170  -3.662  -1.220   1.781  H5   X3X  20  
X3X  H6   H6   H  0  1  N  N  N  28.391  22.630  24.684  -2.812   1.278  -0.706  H6   X3X  21  
X3X  H7   H7   H  0  1  N  N  N  28.036  24.315  25.197  -2.771   0.933   1.039  H7   X3X  22  
X3X  H8   H8   H  0  1  N  N  N  31.505  24.136  25.655   0.056   1.604  -2.013  H8   X3X  23  
X3X  H9   H9   H  0  1  N  N  N  28.504  26.904  22.814   2.846   1.251  -0.554  H9   X3X  24  
X3X  H10  H10  H  0  1  N  N  N  30.219  26.794  22.293   2.708   0.907   1.187  H10  X3X  25  
X3X  H11  H11  H  0  1  N  N  N  30.778  28.826  23.245   3.372  -1.471   0.720  H11  X3X  26  
X3X  H12  H12  H  0  1  N  N  N  29.167  30.214  22.273   3.850  -0.475  -1.965  H12  X3X  27  
X3X  H13  H13  H  0  1  N  N  N  28.157  28.875  24.767   5.344   0.596  -0.352  H13  X3X  28  
X3X  H14  H14  H  0  1  N  N  N  29.812  28.682  25.438   5.033   0.297   1.375  H14  X3X  29  
X3X  H15  H15  H  0  1  N  N  N  28.989  30.824  25.682   6.874  -0.992   0.565  H15  X3X  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X3X  O5   C5   SING  N  N   1  
X3X  O2   C2   SING  N  N   2  
X3X  C6   C5   SING  N  N   3  
X3X  C6   O6   SING  N  N   4  
X3X  OAA  PAO  DOUB  N  N   5  
X3X  C5   C4   SING  N  N   6  
X3X  O1   PAO  SING  N  N   7  
X3X  O1   C1   SING  N  N   8  
X3X  C2   C1   SING  N  N   9  
X3X  C2   C3   SING  N  N  10  
X3X  PAO  O6   SING  N  N  11  
X3X  PAO  OAF  SING  N  N  12  
X3X  C3   O3   SING  N  N  13  
X3X  C4   O4   SING  N  N  14  
X3X  O3   H1   SING  N  N  15  
X3X  C3   H2   SING  N  N  16  
X3X  C3   H3   SING  N  N  17  
X3X  C2   H4   SING  N  N  18  
X3X  O2   H5   SING  N  N  19  
X3X  C1   H6   SING  N  N  20  
X3X  C1   H7   SING  N  N  21  
X3X  OAF  H8   SING  N  N  22  
X3X  C6   H9   SING  N  N  23  
X3X  C6   H10  SING  N  N  24  
X3X  C5   H11  SING  N  N  25  
X3X  O5   H12  SING  N  N  26  
X3X  C4   H13  SING  N  N  27  
X3X  C4   H14  SING  N  N  28  
X3X  O4   H15  SING  N  N  29  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X3X  SMILES            ACDLabs               12.01  "O=P(OCC(O)CO)(OCC(O)CO)O"  
X3X  InChI             InChI                 1.03   "InChI=1S/C6H15O8P/c7-1-5(9)3-13-15(11,12)14-4-6(10)2-8/h5-10H,1-4H2,(H,11,12)/t5-,6-/m0/s1"  
X3X  InChIKey          InChI                 1.03   LLCSXHMJULHSJN-WDSKDSINSA-N  
X3X  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H](O)CO[P](O)(=O)OC[C@@H](O)CO"  
X3X  SMILES            CACTVS                3.385  "OC[CH](O)CO[P](O)(=O)OC[CH](O)CO"  
X3X  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@@H](COP(=O)(O)OC[C@H](CO)O)O)O"  
X3X  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C(COP(=O)(O)OCC(CO)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X3X  "SYSTEMATIC NAME"  ACDLabs               12.01  "bis[(2S)-2,3-dihydroxypropyl] hydrogen phosphate"  
X3X  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "bis[(2S)-2,3-bis(oxidanyl)propyl] hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X3X  "Create component"  2013-10-14  RCSB  
X3X  "Initial release"   2013-11-13  RCSB  
X3X  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     X3X
_pdbx_chem_comp_synonyms.name        diglycerolphosphate
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
