data_VWX
# 
_chem_comp.id                                    VWX 
_chem_comp.name                                  "[[(2~{R},3~{R},4~{R},5~{R})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-3-oxidanyl-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H27 N9 O20 P4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-02 
_chem_comp.pdbx_modified_date                    2024-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        837.372 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VWX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8ECC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VWX N1  N1  N 0 1 N N N N N N 1.505  5.261  23.768 10.876  3.543  -2.484 N1  VWX 1  
VWX C1  C1  C 0 1 Y N N N N N 2.332  6.297  23.891 10.551  2.199  -2.539 C1  VWX 2  
VWX N2  N2  N 0 1 Y N N N N N 3.644  6.072  24.153 11.210  1.373  -3.345 N2  VWX 3  
VWX C2  C2  C 0 1 Y N N N N N 4.465  7.125  24.274 10.907  0.089  -3.405 C2  VWX 4  
VWX N3  N3  N 0 1 Y N N N N N 4.187  8.423  24.171 9.948   -0.445 -2.678 N3  VWX 5  
VWX C3  C3  C 0 1 Y N N N N N 2.882  8.611  23.913 9.235   0.303  -1.843 C3  VWX 6  
VWX C4  C4  C 0 1 Y N N N N N 1.920  7.636  23.764 9.522   1.674  -1.739 C4  VWX 7  
VWX N4  N4  N 0 1 Y N N N N N 0.684  8.217  23.507 8.667   2.193  -0.825 N4  VWX 8  
VWX C5  C5  C 0 1 Y N N N N N 0.915  9.508  23.500 7.896   1.250  -0.369 C5  VWX 9  
VWX N5  N5  N 0 1 Y N N N N N 2.228  9.805  23.757 8.201   0.066  -0.973 N5  VWX 10 
VWX C6  C6  C 0 1 N N R N N N 2.837  11.119 23.800 7.554   -1.225 -0.726 C6  VWX 11 
VWX O1  O1  O 0 1 N N N N N N 1.909  12.050 24.309 6.225   -1.028 -0.195 O1  VWX 12 
VWX C7  C7  C 0 1 N N R N N N 2.043  13.316 23.612 5.888   -2.272 0.458  C7  VWX 13 
VWX C8  C8  C 0 1 N N N N N N 0.712  13.673 22.998 4.766   -2.053 1.474  C8  VWX 14 
VWX O2  O2  O 0 1 N N N N N N 0.099  12.462 22.498 3.565   -1.694 0.788  O2  VWX 15 
VWX P1  P1  P 0 1 N N N N N N -1.379 12.484 21.870 2.179   -1.389 1.548  P1  VWX 16 
VWX O3  O3  O 0 1 N N N N N N -2.151 13.646 22.435 2.344   -0.071 2.458  O3  VWX 17 
VWX O4  O4  O 0 1 N N N N N N -1.953 11.111 22.070 1.823   -2.540 2.407  O4  VWX 18 
VWX O5  O5  O 0 1 N N N N N N -1.119 12.712 20.297 1.014   -1.148 0.463  O5  VWX 19 
VWX C9  C9  C 0 1 N N R N N N 0.117  12.189 19.786 -0.356  -0.957 0.821  C9  VWX 20 
VWX C10 C10 C 0 1 N N R N N N 1.001  13.330 19.278 -1.264  -1.987 0.106  C10 VWX 21 
VWX O6  O6  O 0 1 N N N N N N 0.286  14.552 19.132 -0.601  -2.526 -1.040 O6  VWX 22 
VWX C11 C11 C 0 1 N N R N N N 1.536  12.850 17.917 -2.501  -1.172 -0.317 C11 VWX 23 
VWX C12 C12 C 0 1 N N N N N N 3.039  12.821 17.772 -3.761  -1.781 0.301  C12 VWX 24 
VWX O7  O7  O 0 1 N N N N N N 3.628  12.044 18.848 -4.913  -1.091 -0.188 O7  VWX 25 
VWX P2  P2  P 0 1 N N N N N N 5.221  12.055 19.054 -6.415  -1.468 0.253  P2  VWX 26 
VWX O8  O8  O 0 1 N N N N N N 5.662  13.423 19.457 -6.662  -2.903 -0.014 O8  VWX 27 
VWX O9  O9  O 0 1 N N N N N N 5.608  10.895 19.910 -6.602  -1.174 1.825  O9  VWX 28 
VWX O10 O10 O 0 1 N N N N N N 5.777  11.771 17.576 -7.461  -0.578 -0.587 O10 VWX 29 
VWX P3  P3  P 0 1 N N N N N N 7.192  11.233 17.047 -9.046  -0.668 -0.852 P3  VWX 30 
VWX O11 O11 O 0 1 N N N N N N 8.240  11.521 18.072 -9.349  -1.851 -1.900 O11 VWX 31 
VWX O12 O12 O 0 1 N N N N N N 7.039  9.841  16.525 -9.744  -0.948 0.423  O12 VWX 32 
VWX O13 O13 O 0 1 N N N N N N 7.420  12.219 15.810 -9.570  0.730  -1.454 O13 VWX 33 
VWX P4  P4  P 0 1 N N N N N N 7.451  13.824 15.709 -11.014 1.435  -1.551 P4  VWX 34 
VWX O14 O14 O 0 1 N N N N N N 6.088  14.212 15.183 -10.827 2.993  -1.913 O14 VWX 35 
VWX O15 O15 O 0 1 N N N N N N 7.705  14.317 17.113 -11.885 0.718  -2.700 O15 VWX 36 
VWX O16 O16 O 0 1 N N N N N N 8.575  14.171 14.764 -11.712 1.311  -0.252 O16 VWX 37 
VWX O17 O17 O 0 1 N N N N N N 1.012  11.512 17.719 -2.315  0.169  0.167  O17 VWX 38 
VWX C13 C13 C 0 1 N N R N N N -0.108 11.321 18.549 -0.891  0.388  0.267  C13 VWX 39 
VWX N6  N6  N 0 1 Y N N N N N -0.237 9.895  18.852 -0.601  1.482  1.196  N6  VWX 40 
VWX C14 C14 C 0 1 Y N N N N N -1.392 9.157  18.760 -1.404  1.914  2.209  C14 VWX 41 
VWX N7  N7  N 0 1 Y N N N N N -1.236 7.899  19.100 -0.834  2.903  2.833  N7  VWX 42 
VWX C15 C15 C 0 1 Y N N N N N 0.108  7.800  19.439 0.364   3.164  2.259  C15 VWX 43 
VWX C16 C16 C 0 1 N N N N N N 0.859  6.671  19.890 1.396   4.103  2.506  C16 VWX 44 
VWX O18 O18 O 0 1 N N N N N N 0.462  5.525  20.071 1.303   4.913  3.412  O18 VWX 45 
VWX N8  N8  N 0 1 N N N N N N 2.198  7.025  20.123 2.488   4.076  1.709  N8  VWX 46 
VWX C17 C17 C 0 1 N N N N N N 2.717  8.253  19.952 2.581   3.170  0.703  C17 VWX 47 
VWX N9  N9  N 0 1 N N N N N N 2.044  9.299  19.541 1.641   2.299  0.463  N9  VWX 48 
VWX C18 C18 C 0 1 Y N N N N N 0.733  9.025  19.295 0.528   2.255  1.210  C18 VWX 49 
VWX C19 C19 C 0 1 N N S N N N 3.204  13.120 22.626 7.187   -2.707 1.172  C19 VWX 50 
VWX O19 O19 O 0 1 N N N N N N 4.451  13.505 23.185 7.342   -4.126 1.107  O19 VWX 51 
VWX C20 C20 C 0 1 N N R N N N 3.212  11.608 22.408 8.308   -2.003 0.375  C20 VWX 52 
VWX O20 O20 O 0 1 N N N N N N 4.474  11.103 22.033 9.190   -2.965 -0.206 O20 VWX 53 
VWX H1  H1  H 0 1 N N N N N N 2.014  4.410  23.897 11.591  3.892  -3.038 H1  VWX 54 
VWX H2  H2  H 0 1 N N N N N N 0.784  5.326  24.458 10.385  4.137  -1.894 H2  VWX 55 
VWX H3  H3  H 0 1 N N N N N N 5.497  6.887  24.485 11.468  -0.547 -4.074 H3  VWX 56 
VWX H4  H4  H 0 1 N N N N N N 0.156  10.253 23.313 7.121   1.386  0.371  H4  VWX 57 
VWX H5  H5  H 0 1 N N N N N N 3.741  11.094 24.426 7.512   -1.810 -1.645 H5  VWX 58 
VWX H6  H6  H 0 1 N N N N N N 2.324  14.102 24.328 5.591   -3.019 -0.279 H6  VWX 59 
VWX H7  H7  H 0 1 N N N N N N 0.863  14.382 22.170 4.602   -2.971 2.038  H7  VWX 60 
VWX H8  H8  H 0 1 N N N N N N 0.063  14.131 23.759 5.047   -1.252 2.158  H8  VWX 61 
VWX H9  H9  H 0 1 N N N N N N -2.937 13.327 22.862 2.578   0.724  1.960  H9  VWX 62 
VWX H10 H10 H 0 1 N N N N N N 0.654  11.614 20.554 -0.485  -1.010 1.903  H10 VWX 63 
VWX H11 H11 H 0 1 N N N N N N 1.848  13.460 19.967 -1.549  -2.786 0.791  H11 VWX 64 
VWX H12 H12 H 0 1 N N N N N N -0.037 14.834 19.980 -1.125  -3.178 -1.526 H12 VWX 65 
VWX H13 H13 H 0 1 N N N N N N 1.128  13.514 17.140 -2.587  -1.165 -1.403 H13 VWX 66 
VWX H14 H14 H 0 1 N N N N N N 3.303  12.364 16.807 -3.826  -2.835 0.029  H14 VWX 67 
VWX H15 H15 H 0 1 N N N N N N 3.428  13.849 17.810 -3.716  -1.688 1.386  H15 VWX 68 
VWX H16 H16 H 0 1 N N N N N N 6.119  11.203 20.649 -6.455  -0.251 2.073  H16 VWX 69 
VWX H17 H17 H 0 1 N N N N N N 8.711  10.722 18.277 -8.923  -1.734 -2.760 H17 VWX 70 
VWX H18 H18 H 0 1 N N N N N N 6.181  14.616 14.328 -11.658 3.482  -1.988 H18 VWX 71 
VWX H19 H19 H 0 1 N N N N N N 8.542  14.764 17.145 -11.487 0.761  -3.580 H19 VWX 72 
VWX H20 H20 H 0 1 N N N N N N -1.019 11.669 18.041 -0.465  0.596  -0.715 H20 VWX 73 
VWX H21 H21 H 0 1 N N N N N N -2.336 9.572  18.439 -2.369  1.497  2.457  H21 VWX 74 
VWX H22 H22 H 0 1 N N N N N N 2.815  6.305  20.442 3.208   4.708  1.856  H22 VWX 75 
VWX H23 H23 H 0 1 N N N N N N 3.766  8.387  20.170 3.464   3.169  0.081  H23 VWX 76 
VWX H24 H24 H 0 1 N N N N N N 2.995  13.643 21.681 7.183   -2.371 2.209  H24 VWX 77 
VWX H25 H25 H 0 1 N N N N N N 4.459  14.444 23.326 8.142   -4.454 1.541  H25 VWX 78 
VWX H26 H26 H 0 1 N N N N N N 2.430  11.328 21.686 8.859   -1.316 1.018  H26 VWX 79 
VWX H27 H27 H 0 1 N N N N N N 4.416  10.162 21.912 9.644   -3.522 0.441  H27 VWX 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VWX O16 P4  DOUB N N 1  
VWX O14 P4  SING N N 2  
VWX P4  O13 SING N N 3  
VWX P4  O15 SING N N 4  
VWX O13 P3  SING N N 5  
VWX O12 P3  DOUB N N 6  
VWX P3  O10 SING N N 7  
VWX P3  O11 SING N N 8  
VWX O10 P2  SING N N 9  
VWX O17 C11 SING N N 10 
VWX O17 C13 SING N N 11 
VWX C12 C11 SING N N 12 
VWX C12 O7  SING N N 13 
VWX C11 C10 SING N N 14 
VWX C13 N6  SING N N 15 
VWX C13 C9  SING N N 16 
VWX C14 N6  SING Y N 17 
VWX C14 N7  DOUB Y N 18 
VWX O7  P2  SING N N 19 
VWX N6  C18 SING Y N 20 
VWX P2  O8  DOUB N N 21 
VWX P2  O9  SING N N 22 
VWX N7  C15 SING Y N 23 
VWX O6  C10 SING N N 24 
VWX C10 C9  SING N N 25 
VWX C18 C15 DOUB Y N 26 
VWX C18 N9  SING N N 27 
VWX C15 C16 SING N N 28 
VWX N9  C17 DOUB N N 29 
VWX C9  O5  SING N N 30 
VWX C16 O18 DOUB N N 31 
VWX C16 N8  SING N N 32 
VWX C17 N8  SING N N 33 
VWX O5  P1  SING N N 34 
VWX P1  O4  DOUB N N 35 
VWX P1  O3  SING N N 36 
VWX P1  O2  SING N N 37 
VWX O20 C20 SING N N 38 
VWX C20 C19 SING N N 39 
VWX C20 C6  SING N N 40 
VWX O2  C8  SING N N 41 
VWX C19 O19 SING N N 42 
VWX C19 C7  SING N N 43 
VWX C8  C7  SING N N 44 
VWX C5  N4  DOUB Y N 45 
VWX C5  N5  SING Y N 46 
VWX N4  C4  SING Y N 47 
VWX C7  O1  SING N N 48 
VWX N5  C6  SING N N 49 
VWX N5  C3  SING Y N 50 
VWX C4  C1  DOUB Y N 51 
VWX C4  C3  SING Y N 52 
VWX N1  C1  SING N N 53 
VWX C6  O1  SING N N 54 
VWX C1  N2  SING Y N 55 
VWX C3  N3  DOUB Y N 56 
VWX N2  C2  DOUB Y N 57 
VWX N3  C2  SING Y N 58 
VWX N1  H1  SING N N 59 
VWX N1  H2  SING N N 60 
VWX C2  H3  SING N N 61 
VWX C5  H4  SING N N 62 
VWX C6  H5  SING N N 63 
VWX C7  H6  SING N N 64 
VWX C8  H7  SING N N 65 
VWX C8  H8  SING N N 66 
VWX O3  H9  SING N N 67 
VWX C9  H10 SING N N 68 
VWX C10 H11 SING N N 69 
VWX O6  H12 SING N N 70 
VWX C11 H13 SING N N 71 
VWX C12 H14 SING N N 72 
VWX C12 H15 SING N N 73 
VWX O9  H16 SING N N 74 
VWX O11 H17 SING N N 75 
VWX O14 H18 SING N N 76 
VWX O15 H19 SING N N 77 
VWX C13 H20 SING N N 78 
VWX C14 H21 SING N N 79 
VWX N8  H22 SING N N 80 
VWX C17 H23 SING N N 81 
VWX C19 H24 SING N N 82 
VWX O19 H25 SING N N 83 
VWX C20 H26 SING N N 84 
VWX O20 H27 SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VWX InChI            InChI                1.06  "InChI=1S/C20H27N9O20P4/c21-15-9-16(23-3-22-15)28(5-26-9)19-13(32)11(30)7(45-19)1-43-51(37,38)47-14-12(31)8(2-44-52(39,40)49-53(41,42)48-50(34,35)36)46-20(14)29-6-27-10-17(29)24-4-25-18(10)33/h3-8,11-14,19-20,30-32H,1-2H2,(H,37,38)(H,39,40)(H,41,42)(H2,21,22,23)(H,24,25,33)(H2,34,35,36)/t7-,8-,11-,12-,13-,14-,19-,20-/m1/s1" 
VWX InChIKey         InChI                1.06  SWVKSPSEHJCWAI-XPWFQUROSA-N                                                                                                                                                                                                                                                                                                           
VWX SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[C@@H]4[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[C@H]4n5cnc6C(=O)NC=Nc56)[C@@H](O)[C@H]3O"                                                                                                                                                                                     
VWX SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[CH]4[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[CH]4n5cnc6C(=O)NC=Nc56)[CH](O)[CH]3O"                                                                                                                                                                                                 
VWX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O[C@@H]4[C@@H]([C@H](O[C@H]4n5cnc6c5N=CNC6=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)O)N"                                                                                                                                                                                         
VWX SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC4C(C(OC4n5cnc6c5N=CNC6=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)O)N"                                                                                                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           VWX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[[(2~{R},3~{R},4~{R},5~{R})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-3-oxidanyl-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VWX "Create component" 2022-09-02 RCSB 
VWX "Initial release"  2024-01-17 RCSB 
# 
