data_VTX
# 
_chem_comp.id                                    VTX 
_chem_comp.name                                  Vortioxetine 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H22 N2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "1-[2-(2,4-dimethylphenyl)sulfanylphenyl]piperazine; 1-(2-((2,4-Dimethylphenyl)thio)phenyl)piperazine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-27 
_chem_comp.pdbx_modified_date                    2024-03-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        298.446 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VTX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AW2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VTX C01 C1  C 0 1 N N N N N N 104.008 149.461 155.324 6.285  -0.215 0.087  C01 VTX 1  
VTX C02 C2  C 0 1 Y N N N N N 105.423 149.213 155.836 4.792  -0.410 0.133  C02 VTX 2  
VTX C03 C3  C 0 1 Y N N N N N 105.641 149.036 157.170 4.173  -0.715 1.331  C03 VTX 3  
VTX C04 C4  C 0 1 Y N N N N N 106.935 148.810 157.642 2.804  -0.895 1.377  C04 VTX 4  
VTX C05 C5  C 0 1 Y N N N N N 108.022 148.762 156.739 2.049  -0.767 0.218  C05 VTX 5  
VTX C07 C6  C 0 1 Y N N N N N 110.019 146.705 157.546 -0.315 0.653  0.201  C07 VTX 6  
VTX C08 C7  C 0 1 Y N N N N N 108.990 145.811 157.322 0.562  1.727  0.245  C08 VTX 7  
VTX C09 C8  C 0 1 Y N N N N N 109.185 144.472 157.489 0.076  3.019  0.184  C09 VTX 8  
VTX C10 C9  C 0 1 Y N N N N N 110.404 143.997 157.878 -1.285 3.246  0.080  C10 VTX 9  
VTX C11 C10 C 0 1 Y N N N N N 111.452 144.869 158.107 -2.166 2.182  0.036  C11 VTX 10 
VTX C12 C11 C 0 1 Y N N N N N 111.282 146.249 157.947 -1.687 0.882  0.095  C12 VTX 11 
VTX C14 C12 C 0 1 N N N N N N 112.414 147.951 159.373 -3.468 -0.194 1.219  C14 VTX 12 
VTX C15 C13 C 0 1 N N N N N N 113.609 148.873 159.603 -4.370 -1.429 1.173  C15 VTX 13 
VTX C17 C14 C 0 1 N N N N N N 114.822 147.770 157.900 -4.254 -1.424 -1.245 C17 VTX 14 
VTX C18 C15 C 0 1 N N N N N N 113.619 146.924 157.499 -3.352 -0.189 -1.199 C18 VTX 15 
VTX C19 C16 C 0 1 Y N N N N N 107.741 148.951 155.380 2.675  -0.460 -0.985 C19 VTX 16 
VTX C20 C17 C 0 1 N N N N N N 108.875 148.911 154.362 1.860  -0.321 -2.245 C20 VTX 17 
VTX C21 C18 C 0 1 Y N N N N N 106.456 149.173 154.966 4.043  -0.277 -1.022 C21 VTX 18 
VTX N13 N1  N 0 1 N N N N N N 112.388 147.159 158.183 -2.578 -0.197 0.050  N13 VTX 19 
VTX N16 N2  N 0 1 N N N N N N 114.349 149.082 158.353 -5.145 -1.421 -0.076 N16 VTX 20 
VTX S06 S1  S 0 1 N N N N N N 109.719 148.477 157.309 0.303  -0.996 0.271  S06 VTX 21 
VTX H1  H1  H 0 1 N N N N N N 103.530 148.499 155.086 6.770  -1.170 -0.116 H1  VTX 22 
VTX H2  H2  H 0 1 N N N N N N 103.424 149.980 156.098 6.535  0.494  -0.703 H2  VTX 23 
VTX H3  H3  H 0 1 N N N N N N 104.050 150.083 154.418 6.631  0.172  1.045  H3  VTX 24 
VTX H4  H4  H 0 1 N N N N N N 104.812 149.071 157.862 4.760  -0.814 2.232  H4  VTX 25 
VTX H5  H5  H 0 1 N N N N N N 107.106 148.671 158.699 2.322  -1.134 2.313  H5  VTX 26 
VTX H6  H6  H 0 1 N N N N N N 108.022 146.176 157.012 1.625  1.553  0.327  H6  VTX 27 
VTX H7  H7  H 0 1 N N N N N N 108.371 143.784 157.313 0.760  3.854  0.218  H7  VTX 28 
VTX H8  H8  H 0 1 N N N N N N 110.551 142.935 158.008 -1.659 4.258  0.033  H8  VTX 29 
VTX H9  H9  H 0 1 N N N N N N 112.412 144.481 158.413 -3.228 2.363  -0.045 H9  VTX 30 
VTX H10 H10 H 0 1 N N N N N N 111.513 148.582 159.364 -4.083 0.706  1.205  H10 VTX 31 
VTX H11 H11 H 0 1 N N N N N N 112.368 147.258 160.226 -2.872 -0.212 2.131  H11 VTX 32 
VTX H12 H12 H 0 1 N N N N N N 114.279 148.418 160.348 -3.757 -2.329 1.215  H12 VTX 33 
VTX H13 H13 H 0 1 N N N N N N 113.250 149.843 159.977 -5.052 -1.414 2.024  H13 VTX 34 
VTX H14 H14 H 0 1 N N N N N N 115.368 147.273 158.715 -4.851 -1.405 -2.157 H14 VTX 35 
VTX H15 H15 H 0 1 N N N N N N 115.490 147.896 157.035 -3.639 -2.324 -1.231 H15 VTX 36 
VTX H16 H16 H 0 1 N N N N N N 113.438 147.096 156.428 -2.671 -0.204 -2.049 H16 VTX 37 
VTX H17 H17 H 0 1 N N N N N N 113.889 145.870 157.661 -3.966 0.711  -1.240 H17 VTX 38 
VTX H18 H18 H 0 1 N N N N N N 109.287 149.923 154.231 1.539  0.714  -2.358 H18 VTX 39 
VTX H19 H19 H 0 1 N N N N N N 109.666 148.237 154.721 2.467  -0.609 -3.104 H19 VTX 40 
VTX H20 H20 H 0 1 N N N N N N 108.490 148.544 153.399 0.985  -0.968 -2.186 H20 VTX 41 
VTX H21 H21 H 0 1 N N N N N N 106.262 149.320 153.914 4.529  -0.038 -1.956 H21 VTX 42 
VTX H22 H22 H 0 1 N N N N N N 115.127 149.689 158.514 -5.776 -0.635 -0.105 H22 VTX 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VTX C20 C19 SING N N 1  
VTX C21 C19 DOUB Y N 2  
VTX C21 C02 SING Y N 3  
VTX C01 C02 SING N N 4  
VTX C19 C05 SING Y N 5  
VTX C02 C03 DOUB Y N 6  
VTX C05 S06 SING N N 7  
VTX C05 C04 DOUB Y N 8  
VTX C03 C04 SING Y N 9  
VTX S06 C07 SING N N 10 
VTX C08 C09 DOUB Y N 11 
VTX C08 C07 SING Y N 12 
VTX C09 C10 SING Y N 13 
VTX C18 C17 SING N N 14 
VTX C18 N13 SING N N 15 
VTX C07 C12 DOUB Y N 16 
VTX C10 C11 DOUB Y N 17 
VTX C17 N16 SING N N 18 
VTX C12 C11 SING Y N 19 
VTX C12 N13 SING N N 20 
VTX N13 C14 SING N N 21 
VTX N16 C15 SING N N 22 
VTX C14 C15 SING N N 23 
VTX C01 H1  SING N N 24 
VTX C01 H2  SING N N 25 
VTX C01 H3  SING N N 26 
VTX C03 H4  SING N N 27 
VTX C04 H5  SING N N 28 
VTX C08 H6  SING N N 29 
VTX C09 H7  SING N N 30 
VTX C10 H8  SING N N 31 
VTX C11 H9  SING N N 32 
VTX C14 H10 SING N N 33 
VTX C14 H11 SING N N 34 
VTX C15 H12 SING N N 35 
VTX C15 H13 SING N N 36 
VTX C17 H14 SING N N 37 
VTX C17 H15 SING N N 38 
VTX C18 H16 SING N N 39 
VTX C18 H17 SING N N 40 
VTX C20 H18 SING N N 41 
VTX C20 H19 SING N N 42 
VTX C20 H20 SING N N 43 
VTX C21 H21 SING N N 44 
VTX N16 H22 SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VTX InChI            InChI                1.06    "InChI=1S/C18H22N2S/c1-14-7-8-17(15(2)13-14)21-18-6-4-3-5-16(18)20-11-9-19-10-12-20/h3-8,13,19H,9-12H2,1-2H3" 
VTX InChIKey         InChI                1.06    YQNWZWMKLDQSAC-UHFFFAOYSA-N                                                                                   
VTX SMILES_CANONICAL CACTVS               3.385   "Cc1ccc(Sc2ccccc2N3CCNCC3)c(C)c1"                                                                             
VTX SMILES           CACTVS               3.385   "Cc1ccc(Sc2ccccc2N3CCNCC3)c(C)c1"                                                                             
VTX SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(c(c1)C)Sc2ccccc2N3CCNCC3"                                                                             
VTX SMILES           "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(c(c1)C)Sc2ccccc2N3CCNCC3"                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           VTX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "1-[2-(2,4-dimethylphenyl)sulfanylphenyl]piperazine" 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 VTX "1-[2-(2,4-dimethylphenyl)sulfanylphenyl]piperazine" PDB     ? 
2 VTX "1-(2-((2,4-Dimethylphenyl)thio)phenyl)piperazine"   PUBCHEM ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VTX "Create component" 2022-09-02 PDBE 
VTX "Initial release"  2024-03-06 RCSB 
# 
