data_VQX
# 
_chem_comp.id                                    VQX 
_chem_comp.name                                  "8-azido-1-((1S,2S,3S,4S,5R,6S)-2,3,4-trihydroxy-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptan-7-yl)octan-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H26 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-07 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        342.391 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VQX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8K7V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VQX N1  N1  N 0  1 N N N N N N 81.474 132.734 97.911 2.284   0.607  -0.887 N1  VQX 1  
VQX C4  C1  C 0  1 N N S N N N 79.139 132.004 97.616 3.138   -0.415 -1.477 C4  VQX 2  
VQX C5  C2  C 0  1 N N S N N N 80.134 133.172 97.529 3.718   0.914  -1.022 C5  VQX 3  
VQX C6  C3  C 0  1 N N R N N N 80.176 133.972 96.206 4.508   1.012  0.274  C6  VQX 4  
VQX C7  C4  C 0  1 N N N N N N 80.001 135.463 96.446 5.703   1.942  0.058  C7  VQX 5  
VQX C8  C5  C 0  1 N N N N N N 82.206 131.807 97.281 1.055   0.997  -0.495 C8  VQX 6  
VQX C10 C6  C 0  1 N N N N N N 84.670 132.177 97.352 -1.388  0.750  -0.148 C10 VQX 7  
VQX C13 C7  C 0  1 N N N N N N 85.886 133.639 94.399 -5.042  -0.452 0.019  C13 VQX 8  
VQX C1  C8  C 0  1 N N S N N N 79.267 133.414 95.110 5.014   -0.337 0.741  C1  VQX 9  
VQX O1  O1  O 0  1 N N N N N N 81.022 135.972 97.303 6.387   2.136  1.297  O1  VQX 10 
VQX C2  C9  C 0  1 N N S N N N 79.396 131.913 95.075 3.953   -1.413 0.689  C2  VQX 11 
VQX O2  O2  O 0  1 N N N N N N 77.906 133.815 95.312 6.110   -0.730 -0.087 O2  VQX 12 
VQX C3  C10 C 0  1 N N S N N N 78.748 131.309 96.311 3.472   -1.677 -0.709 C3  VQX 13 
VQX O3  O3  O 0  1 N N N N N N 78.781 131.383 93.904 4.495   -2.621 1.228  O3  VQX 14 
VQX O4  O4  O 0  1 N N N N N N 79.110 129.929 96.413 2.292   -2.481 -0.647 O4  VQX 15 
VQX O5  O5  O 0  1 N N N N N N 81.948 130.609 97.316 0.895   2.093  -0.002 O5  VQX 16 
VQX C9  C11 C 0  1 N N N N N N 83.411 132.333 96.562 -0.120  0.070  -0.670 C9  VQX 17 
VQX C11 C12 C 0  1 N N N N N N 85.818 133.046 96.862 -2.581  -0.191 -0.326 C11 VQX 18 
VQX C12 C13 C 0  1 N N N N N N 86.340 132.699 95.487 -3.849  0.489  0.196  C12 VQX 19 
VQX H4  H2  H 0  1 N N N N N N 78.750 131.660 98.586 3.045   -0.550 -2.555 H4  VQX 20 
VQX H6  H4  H 0  1 N N N N N N 79.812 133.891 98.296 4.006   1.625  -1.796 H6  VQX 21 
VQX H7  H5  H 0  1 N N N N N N 81.201 133.852 95.826 3.867   1.435  1.048  H7  VQX 22 
VQX H8  H6  H 0  1 N N N N N N 80.047 135.989 95.481 6.384   1.497  -0.668 H8  VQX 23 
VQX H9  H7  H 0  1 N N N N N N 79.021 135.638 96.913 5.352   2.904  -0.317 H9  VQX 24 
VQX H17 H8  H 0  1 N N N N N N 84.457 132.442 98.398 -1.265  0.985  0.909  H17 VQX 25 
VQX H18 H9  H 0  1 N N N N N N 84.985 131.124 97.297 -1.564  1.669  -0.707 H18 VQX 26 
VQX H24 H10 H 0  1 N N N N N N 85.206 134.425 94.758 -5.165  -0.688 -1.039 H24 VQX 27 
VQX H25 H11 H 0  1 N N N N N N 86.718 134.099 93.845 -4.866  -1.371 0.578  H25 VQX 28 
VQX H1  H13 H 0  1 N N N N N N 79.619 133.810 94.146 5.367   -0.243 1.768  H1  VQX 29 
VQX H10 H14 H 0  1 N N N N N N 80.889 136.903 97.436 7.158   2.717  1.235  H10 VQX 30 
VQX H2  H15 H 0  1 N N N N N N 80.465 131.653 95.082 3.108   -1.104 1.305  H2  VQX 31 
VQX H11 H16 H 0  1 N N N N N N 77.854 134.763 95.330 6.493   -1.586 0.147  H11 VQX 32 
VQX H3  H17 H 0  1 N N N N N N 77.657 131.390 96.198 4.243   -2.226 -1.249 H3  VQX 33 
VQX H12 H18 H 0  1 N N N N N N 78.872 130.437 93.898 4.788   -2.545 2.147  H12 VQX 34 
VQX H13 H19 H 0  1 N N N N N N 78.705 129.551 97.185 2.421   -3.337 -0.218 H13 VQX 35 
VQX H15 H20 H 0  1 N N N N N N 83.521 131.786 95.614 -0.243  -0.166 -1.727 H15 VQX 36 
VQX H16 H21 H 0  1 N N N N N N 83.257 133.402 96.353 0.055   -0.849 -0.111 H16 VQX 37 
VQX H20 H22 H 0  1 N N N N N N 86.649 132.949 97.577 -2.704  -0.427 -1.383 H20 VQX 38 
VQX H19 H23 H 0  1 N N N N N N 85.471 134.090 96.842 -2.406  -1.110 0.233  H19 VQX 39 
VQX H21 H24 H 0  1 N N N N N N 85.996 131.685 95.233 -4.025  1.408  -0.363 H21 VQX 40 
VQX H22 H25 H 0  1 N N N N N N 87.439 132.716 95.521 -3.726  0.724  1.253  H22 VQX 41 
VQX C14 C14 C 0  1 N N N N N N ?      ?       ?      -6.310  0.228  0.540  C14 VQX 42 
VQX C15 C15 C 0  1 N N N N N N ?      ?       ?      -7.503  -0.713 0.363  C15 VQX 43 
VQX N2  N2  N 0  1 N N N N N N ?      ?       ?      -8.717  -0.062 0.862  N2  VQX 44 
VQX N3  N3  N 1  1 N N N N N N ?      ?       ?      -9.584  0.117  0.170  N3  VQX 45 
VQX N4  N4  N -1 1 N N N N N N ?      ?       ?      -10.451 0.296  -0.523 N4  VQX 46 
VQX H23 H12 H 0  1 N N N N N N ?      ?       ?      -6.187  0.463  1.597  H23 VQX 47 
VQX H26 H26 H 0  1 N N N N N N ?      ?       ?      -6.485  1.147  -0.019 H26 VQX 48 
VQX H27 H27 H 0  1 N N N N N N ?      ?       ?      -7.626  -0.949 -0.695 H27 VQX 49 
VQX H28 H28 H 0  1 N N N N N N ?      ?       ?      -7.327  -1.632 0.922  H28 VQX 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VQX O3  C2  SING N N 1  
VQX C13 C12 SING N N 2  
VQX C2  C1  SING N N 3  
VQX C2  C3  SING N N 4  
VQX C1  O2  SING N N 5  
VQX C1  C6  SING N N 6  
VQX C12 C11 SING N N 7  
VQX C6  C7  SING N N 8  
VQX C6  C5  SING N N 9  
VQX C3  O4  SING N N 10 
VQX C3  C4  SING N N 11 
VQX C7  O1  SING N N 12 
VQX C9  C8  SING N N 13 
VQX C9  C10 SING N N 14 
VQX C11 C10 SING N N 15 
VQX C8  O5  DOUB N N 16 
VQX C8  N1  SING N N 17 
VQX C5  C4  SING N N 18 
VQX C5  N1  SING N N 19 
VQX C4  H4  SING N N 20 
VQX C5  H6  SING N N 21 
VQX C6  H7  SING N N 22 
VQX C7  H8  SING N N 23 
VQX C7  H9  SING N N 24 
VQX C10 H17 SING N N 25 
VQX C10 H18 SING N N 26 
VQX C13 H24 SING N N 27 
VQX C13 H25 SING N N 28 
VQX C1  H1  SING N N 29 
VQX O1  H10 SING N N 30 
VQX C2  H2  SING N N 31 
VQX O2  H11 SING N N 32 
VQX C3  H3  SING N N 33 
VQX O3  H12 SING N N 34 
VQX O4  H13 SING N N 35 
VQX C9  H15 SING N N 36 
VQX C9  H16 SING N N 37 
VQX C11 H20 SING N N 38 
VQX C11 H19 SING N N 39 
VQX C12 H21 SING N N 40 
VQX C12 H22 SING N N 41 
VQX C13 C14 SING N N 42 
VQX C14 C15 SING N N 43 
VQX C15 N2  SING N N 44 
VQX N2  N3  DOUB N N 45 
VQX N3  N4  DOUB N N 46 
VQX C14 H23 SING N N 47 
VQX C14 H26 SING N N 48 
VQX C15 H27 SING N N 49 
VQX C15 H28 SING N N 50 
VQX N1  C4  SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VQX InChI            InChI                1.06  "InChI=1S/C15H26N4O5/c16-18-17-7-5-3-1-2-4-6-10(21)19-11-9(8-20)13(22)15(24)14(23)12(11)19/h9,11-15,20,22-24H,1-8H2/t9-,11-,12-,13-,14-,15-,19-/m0/s1" 
VQX InChIKey         InChI                1.06  BVEYUFNXLOTLDG-DWDHYAMMSA-N                                                                                                                            
VQX SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1[C@H](O)[C@H](O)[C@@H](O)[C@@H]2[C@H]1N2C(=O)CCCCCCCN=[N+]=[N-]"                                                                             
VQX SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH]2[CH]1N2C(=O)CCCCCCCN=[N+]=[N-]"                                                                                      
VQX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CCCC(=O)N1[C@@H]2C1[C@@H]([C@H]([C@H]([C@H]2CO)O)O)O)CCCN=[N+]=[N-]"                                                                                
VQX SMILES           "OpenEye OEToolkits" 2.0.7 "C(CCCC(=O)N1C2C1C(C(C(C2CO)O)O)O)CCCN=[N+]=[N-]"                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           VQX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "8-azido-1-[(1~{S},2~{R},3~{S},4~{S},5~{S})-2-(hydroxymethyl)-3,4,5-tris(oxidanyl)-7-azabicyclo[4.1.0]heptan-7-yl]octan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VQX "Create component"   2023-08-07 PDBJ 
VQX "Modify coordinates" 2024-02-07 PDBJ 
VQX "Initial release"    2024-07-31 RCSB 
VQX "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VQX 
_pdbx_chem_comp_pcm.modified_residue_id                ASP 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C4 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OD2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
