data_UVX
# 
_chem_comp.id                                    UVX 
_chem_comp.name                                  "[(1R,3R,4R,7S)-3-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-7-hydroxy-5-methylidene-2-oxabicyclo[2.2.1]hept-1-yl]methyl dihydrogen phosphate" 
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C12 H15 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               DU 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-10-11 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        346.230 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UVX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3OZ3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UVX P      P      P 0 1 N N N 10.441 4.573  4.239  4.301  0.969  0.207  P      UVX 1  
UVX N1     N1     N 0 1 N N N 6.247  6.097  7.457  -2.428 0.246  0.365  N1     UVX 2  
UVX C2     C2     C 0 1 N N N 5.282  6.236  8.360  -3.700 -0.013 0.721  C2     UVX 3  
UVX O2     O2     O 0 1 N N N 4.530  7.223  8.310  -3.958 -1.040 1.318  O2     UVX 4  
UVX N3     N3     N 0 1 N N N 5.116  5.311  9.311  -4.690 0.849  0.424  N3     UVX 5  
UVX C4     C4     C 0 1 N N N 5.886  4.253  9.400  -4.421 1.992  -0.238 C4     UVX 6  
UVX O4     O4     O 0 1 N N N 5.684  3.431  10.337 -5.317 2.773  -0.506 O4     UVX 7  
UVX C5     C5     C 0 1 N N N 6.896  4.069  8.486  -3.088 2.277  -0.619 C5     UVX 8  
UVX C6     C6     C 0 1 N N N 7.059  5.009  7.495  -2.113 1.395  -0.308 C6     UVX 9  
UVX "C1'"  "C1'"  C 0 1 N N R 6.348  7.130  6.405  -1.371 -0.708 0.707  "C1'"  UVX 10 
UVX "C2'"  "C2'"  C 0 1 N N R 7.142  8.356  6.821  -1.275 -1.822 -0.383 "C2'"  UVX 11 
UVX "C3'"  "C3'"  C 0 1 N N S 8.483  7.832  6.438  -0.299 -1.101 -1.382 "C3'"  UVX 12 
UVX "O3'"  "O3'"  O 0 1 N N N 9.463  8.880  6.488  0.235  -1.995 -2.361 "O3'"  UVX 13 
UVX "C4'"  "C4'"  C 0 1 N N R 8.148  7.488  5.053  0.751  -0.733 -0.274 "C4'"  UVX 14 
UVX "O4'"  "O4'"  O 0 1 N N N 7.035  6.597  5.255  -0.088 -0.053 0.701  "O4'"  UVX 15 
UVX "C5'"  "C5'"  C 0 1 N N N 9.290  6.843  4.286  1.983  0.042  -0.747 "C5'"  UVX 16 
UVX "O5'"  "O5'"  O 0 1 N N N 9.681  5.690  4.997  2.893  0.200  0.344  "O5'"  UVX 17 
UVX "C6'"  "C6'"  C 0 1 N N N 6.878  9.313  5.689  -0.346 -2.871 0.250  "C6'"  UVX 18 
UVX "C7'"  "C7'"  C 0 1 N N N 6.122  10.589 5.789  -0.643 -4.096 0.606  "C7'"  UVX 19 
UVX "C8'"  "C8'"  C 0 1 N N N 7.587  8.786  4.449  1.011  -2.139 0.346  "C8'"  UVX 20 
UVX OP1    OP1    O 0 1 N N N 11.473 5.205  3.188  5.089  0.364  -0.891 OP1    UVX 21 
UVX OP2    OP2    O 0 1 N N N 11.072 3.622  5.289  4.034  2.523  -0.118 OP2    UVX 22 
UVX OP3    OP3    O 0 1 N Y N 9.333  3.815  3.437  5.119  0.841  1.588  OP3    UVX 23 
UVX H5     H5     H 0 1 N N N 7.545  3.208  8.544  -2.853 3.187  -1.150 H5     UVX 24 
UVX H6     H6     H 0 1 N N N 7.830  4.882  6.750  -1.090 1.595  -0.590 H6     UVX 25 
UVX "H1'"  "H1'"  H 0 1 N N N 5.308  7.422  6.195  -1.565 -1.151 1.684  "H1'"  UVX 26 
UVX "H2'"  "H2'"  H 0 1 N N N 6.983  8.767  7.829  -2.217 -2.189 -0.791 "H2'"  UVX 27 
UVX "H3'"  "H3'"  H 0 1 N N N 8.906  7.028  7.058  -0.749 -0.219 -1.837 "H3'"  UVX 28 
UVX "HO3'" "HO3'" H 0 0 N Y N 10.312 8.532  6.242  -0.434 -2.401 -2.929 "HO3'" UVX 29 
UVX "H5'"  "H5'"  H 0 1 N N N 8.959  6.569  3.273  2.471  -0.508 -1.551 "H5'"  UVX 30 
UVX "H5'A" "H5'A" H 0 0 N N N 10.135 7.543  4.206  1.678  1.023  -1.110 "H5'A" UVX 31 
UVX "H7'"  "H7'"  H 0 1 N N N 6.040  11.237 4.929  -1.646 -4.472 0.461  "H7'"  UVX 32 
UVX "H7'A" "H7'A" H 0 0 N N N 5.655  10.868 6.722  0.113  -4.731 1.043  "H7'A" UVX 33 
UVX "H8'"  "H8'"  H 0 1 N N N 8.366  9.464  4.069  1.774  -2.670 -0.223 "H8'"  UVX 34 
UVX "H8'A" "H8'A" H 0 0 N N N 6.911  8.616  3.598  1.311  -2.045 1.390  "H8'A" UVX 35 
UVX HOP2   HOP2   H 0 0 N N N 12.008 3.560  5.139  3.522  2.984  0.561  HOP2   UVX 36 
UVX HOP3   HOP3   H 0 0 N Y N 9.507  3.891  2.506  5.979  1.282  1.577  HOP3   UVX 37 
UVX HN3    HN3    H 0 1 N N N 4.380  5.430  9.977  -5.602 0.647  0.688  HN3    UVX 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UVX OP1   P      DOUB N N 1  
UVX OP3   P      SING N N 2  
UVX P     "O5'"  SING N N 3  
UVX P     OP2    SING N N 4  
UVX "C1'" N1     SING N N 5  
UVX N1    C6     SING N N 6  
UVX N1    C2     SING N N 7  
UVX O2    C2     DOUB N N 8  
UVX C2    N3     SING N N 9  
UVX N3    C4     SING N N 10 
UVX C5    C4     SING N N 11 
UVX C4    O4     DOUB N N 12 
UVX C6    C5     DOUB N N 13 
UVX C5    H5     SING N N 14 
UVX C6    H6     SING N N 15 
UVX "O4'" "C1'"  SING N N 16 
UVX "C1'" "C2'"  SING N N 17 
UVX "C1'" "H1'"  SING N N 18 
UVX "C6'" "C2'"  SING N N 19 
UVX "C3'" "C2'"  SING N N 20 
UVX "C2'" "H2'"  SING N N 21 
UVX "C4'" "C3'"  SING N N 22 
UVX "C3'" "O3'"  SING N N 23 
UVX "C3'" "H3'"  SING N N 24 
UVX "O3'" "HO3'" SING N N 25 
UVX "C5'" "C4'"  SING N N 26 
UVX "C8'" "C4'"  SING N N 27 
UVX "C4'" "O4'"  SING N N 28 
UVX "C5'" "O5'"  SING N N 29 
UVX "C5'" "H5'"  SING N N 30 
UVX "C5'" "H5'A" SING N N 31 
UVX "C8'" "C6'"  SING N N 32 
UVX "C6'" "C7'"  DOUB N N 33 
UVX "C7'" "H7'"  SING N N 34 
UVX "C7'" "H7'A" SING N N 35 
UVX "C8'" "H8'"  SING N N 36 
UVX "C8'" "H8'A" SING N N 37 
UVX OP2   HOP2   SING N N 38 
UVX OP3   HOP3   SING N N 39 
UVX N3    HN3    SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UVX SMILES           ACDLabs              12.01 "O=P(O)(O)OCC23OC(N1C(=O)NC(=O)C=C1)C(C(=C)\C2)C3O"                                                                                                              
UVX SMILES_CANONICAL CACTVS               3.370 "O[C@H]1[C@@H]2[C@@H](O[C@@]1(CO[P](O)(O)=O)CC2=C)N3C=CC(=O)NC3=O"                                                                                               
UVX SMILES           CACTVS               3.370 "O[CH]1[CH]2[CH](O[C]1(CO[P](O)(O)=O)CC2=C)N3C=CC(=O)NC3=O"                                                                                                      
UVX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C=C1C[C@]2([C@H]([C@@H]1[C@@H](O2)N3C=CC(=O)NC3=O)O)COP(=O)(O)O"                                                                                                
UVX SMILES           "OpenEye OEToolkits" 1.7.0 "C=C1CC2(C(C1C(O2)N3C=CC(=O)NC3=O)O)COP(=O)(O)O"                                                                                                                 
UVX InChI            InChI                1.03  "InChI=1S/C12H15N2O8P/c1-6-4-12(5-21-23(18,19)20)9(16)8(6)10(22-12)14-3-2-7(15)13-11(14)17/h2-3,8-10,16H,1,4-5H2,(H,13,15,17)(H2,18,19,20)/t8-,9+,10-,12-/m1/s1" 
UVX InChIKey         InChI                1.03  OJPKMNNCEVWWCI-DTHBNOIPSA-N                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UVX "SYSTEMATIC NAME" ACDLabs              12.01 "[(1R,3R,4R,7S)-3-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-7-hydroxy-5-methylidene-2-oxabicyclo[2.2.1]hept-1-yl]methyl dihydrogen phosphate" 
UVX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(1R,4R,6R,7S)-6-(2,4-dioxopyrimidin-1-yl)-7-hydroxy-2-methylidene-5-oxabicyclo[2.2.1]heptan-4-yl]methyl dihydrogen phosphate"               
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UVX "Create component"  2010-10-11 RCSB 
UVX "Modify descriptor" 2011-06-04 RCSB 
# 
