data_U4X
# 
_chem_comp.id                                    U4X 
_chem_comp.name                                  "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-[5-(phenanthren-9-ylmethoxy)pentyl]piperidine-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H33 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-25 
_chem_comp.pdbx_modified_date                    2023-09-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        439.544 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U4X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CB1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U4X C3  C1  C 0 1 N N S -12.613 -31.899 95.388  -6.411 -1.779 -0.669 C3  U4X 1  
U4X C2  C2  C 0 1 N N N -13.767 -32.822 95.077  -5.294 -0.791 -1.010 C2  U4X 2  
U4X C26 C3  C 0 1 N N N -17.294 -35.223 94.967  -1.593 1.282  -0.255 C26 U4X 3  
U4X C27 C4  C 0 1 N N N -17.378 -36.541 95.734  -0.296 0.491  -0.075 C27 U4X 4  
U4X C28 C5  C 0 1 N N N -18.682 -37.248 95.541  0.901  1.417  -0.304 C28 U4X 5  
U4X N1  N1  N 0 1 N N N -14.999 -32.194 95.605  -5.237 0.259  0.014  N1  U4X 6  
U4X C30 C6  C 0 1 N N N -19.603 -39.418 96.026  3.298  1.454  -0.330 C30 U4X 7  
U4X C25 C7  C 0 1 N N N -16.312 -34.353 95.722  -2.790 0.357  -0.026 C25 U4X 8  
U4X C12 C8  C 0 1 N N N -16.189 -32.938 95.116  -4.088 1.147  -0.205 C12 U4X 9  
U4X C4  C9  C 0 1 N N R -12.519 -31.736 96.893  -7.745 -1.031 -0.604 C4  U4X 10 
U4X C5  C10 C 0 1 N N R -13.781 -31.138 97.424  -7.643 0.088  0.437  C5  U4X 11 
U4X C6  C11 C 0 1 N N R -14.970 -32.033 97.067  -6.490 1.022  0.063  C6  U4X 12 
U4X C7  C12 C 0 1 N N N -16.261 -31.452 97.564  -6.372 2.131  1.111  C7  U4X 13 
U4X O3  O1  O 0 1 N N N -11.402 -32.403 94.855  -6.480 -2.790 -1.677 O3  U4X 14 
U4X O4  O2  O 0 1 N N N -11.446 -30.874 97.275  -8.784 -1.938 -0.229 O4  U4X 15 
U4X O5  O3  O 0 1 N N N -13.690 -31.016 98.807  -8.866 0.827  0.463  O5  U4X 16 
U4X O7  O4  O 0 1 N N N -16.593 -30.207 96.967  -6.194 1.548  2.403  O7  U4X 17 
U4X O29 O5  O 0 1 N N N -18.439 -38.580 96.067  2.113  0.678  -0.137 O29 U4X 18 
U4X C42 C13 C 0 1 Y N N -20.660 -38.791 96.918  4.509  0.579  -0.130 C42 U4X 19 
U4X C41 C14 C 0 1 Y N N -20.272 -38.435 98.238  4.339  -0.721 0.182  C41 U4X 20 
U4X C43 C15 C 0 1 Y N N -22.062 -38.551 96.381  5.799  1.140  -0.278 C43 U4X 21 
U4X C58 C16 C 0 1 Y N N -22.484 -38.909 95.079  5.965  2.493  -0.607 C58 U4X 22 
U4X C59 C17 C 0 1 Y N N -23.811 -38.663 94.660  7.221  3.007  -0.744 C59 U4X 23 
U4X C60 C18 C 0 1 Y N N -24.752 -38.050 95.513  8.343  2.208  -0.562 C60 U4X 24 
U4X C61 C19 C 0 1 Y N N -24.383 -37.678 96.815  8.215  0.886  -0.241 C61 U4X 25 
U4X C44 C20 C 0 1 Y N N -23.067 -37.907 97.289  6.943  0.331  -0.093 C44 U4X 26 
U4X C45 C21 C 0 1 Y N N -22.607 -37.557 98.691  6.758  -1.082 0.251  C45 U4X 27 
U4X C46 C22 C 0 1 Y N N -21.184 -37.836 99.122  5.443  -1.583 0.380  C46 U4X 28 
U4X C55 C23 C 0 1 Y N N -23.478 -36.957 99.627  7.846  -1.934 0.447  C55 U4X 29 
U4X C54 C24 C 0 1 Y N N -23.025 -36.627 100.909 7.631  -3.244 0.766  C54 U4X 30 
U4X C53 C25 C 0 1 Y N N -21.704 -36.902 101.292 6.339  -3.740 0.898  C53 U4X 31 
U4X C52 C26 C 0 1 Y N N -20.802 -37.508 100.412 5.256  -2.934 0.704  C52 U4X 32 
U4X H1  H1  H 0 1 N N N -12.829 -30.914 94.947  -6.206 -2.241 0.297  H1  U4X 33 
U4X H2  H2  H 0 1 N N N -13.853 -32.961 93.989  -4.340 -1.319 -1.043 H2  U4X 34 
U4X H3  H3  H 0 1 N N N -13.607 -33.798 95.559  -5.493 -0.340 -1.982 H3  U4X 35 
U4X H4  H4  H 0 1 N N N -18.282 -34.740 94.931  -1.623 2.100  0.465  H4  U4X 36 
U4X H5  H5  H 0 1 N N N -16.935 -35.401 93.942  -1.635 1.687  -1.266 H5  U4X 37 
U4X H6  H6  H 0 1 N N N -16.568 -37.200 95.388  -0.254 0.087  0.936  H6  U4X 38 
U4X H7  H7  H 0 1 N N N -17.248 -36.331 96.806  -0.266 -0.326 -0.795 H7  U4X 39 
U4X H8  H8  H 0 1 N N N -19.485 -36.747 96.101  0.859  1.821  -1.315 H8  U4X 40 
U4X H9  H9  H 0 1 N N N -18.950 -37.291 94.475  0.871  2.234  0.416  H9  U4X 41 
U4X H11 H11 H 0 1 N N N -19.978 -39.487 94.994  3.306  1.859  -1.341 H11 U4X 42 
U4X H12 H12 H 0 1 N N N -19.353 -40.424 96.393  3.318  2.272  0.390  H12 U4X 43 
U4X H13 H13 H 0 1 N N N -16.650 -34.262 96.765  -2.760 -0.461 -0.746 H13 U4X 44 
U4X H14 H14 H 0 1 N N N -15.323 -34.834 95.698  -2.748 -0.048 0.985  H14 U4X 45 
U4X H15 H15 H 0 1 N N N -17.091 -32.366 95.378  -4.129 1.552  -1.217 H15 U4X 46 
U4X H16 H16 H 0 1 N N N -16.118 -33.031 94.022  -4.117 1.965  0.515  H16 U4X 47 
U4X H17 H17 H 0 1 N N N -12.378 -32.729 97.345  -7.970 -0.602 -1.580 H17 U4X 48 
U4X H18 H18 H 0 1 N N N -13.933 -30.152 96.960  -7.458 -0.345 1.420  H18 U4X 49 
U4X H19 H19 H 0 1 N N N -14.819 -33.016 97.537  -6.684 1.465  -0.914 H19 U4X 50 
U4X H20 H20 H 0 1 N N N -16.180 -31.305 98.651  -5.515 2.762  0.876  H20 U4X 51 
U4X H21 H21 H 0 1 N N N -17.069 -32.167 97.349  -7.280 2.734  1.106  H21 U4X 52 
U4X H22 H22 H 0 1 N N N -10.692 -31.807 95.063  -5.667 -3.305 -1.773 H22 U4X 53 
U4X H23 H23 H 0 1 N N N -11.421 -30.799 98.222  -8.901 -2.676 -0.843 H23 U4X 54 
U4X H24 H24 H 0 1 N N N -14.492 -30.636 99.145  -9.642 0.296  0.691  H24 U4X 55 
U4X H25 H25 H 0 1 N N N -17.417 -29.894 97.323  -6.112 2.194  3.118  H25 U4X 56 
U4X H26 H26 H 0 1 N N N -19.261 -38.628 98.566  3.338  -1.114 0.282  H26 U4X 57 
U4X H27 H27 H 0 1 N N N -21.786 -39.374 94.399  5.102  3.125  -0.752 H27 U4X 58 
U4X H28 H28 H 0 1 N N N -24.111 -38.951 93.663  7.345  4.049  -0.997 H28 U4X 59 
U4X H29 H29 H 0 1 N N N -25.757 -37.867 95.164  9.328  2.636  -0.676 H29 U4X 60 
U4X H30 H30 H 0 1 N N N -25.110 -37.212 97.463  9.094  0.274  -0.102 H30 U4X 61 
U4X H31 H31 H 0 1 N N N -24.502 -36.751 99.351  8.854  -1.559 0.346  H31 U4X 62 
U4X H32 H32 H 0 1 N N N -23.698 -36.156 101.610 8.473  -3.903 0.917  H32 U4X 63 
U4X H33 H33 H 0 1 N N N -21.377 -36.640 102.287 6.191  -4.780 1.151  H33 U4X 64 
U4X H34 H34 H 0 1 N N N -19.796 -37.723 100.742 4.258  -3.333 0.807  H34 U4X 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U4X C59 C58 DOUB Y N 1  
U4X C59 C60 SING Y N 2  
U4X O3  C3  SING N N 3  
U4X C26 C25 SING N N 4  
U4X C26 C27 SING N N 5  
U4X C2  C3  SING N N 6  
U4X C2  N1  SING N N 7  
U4X C58 C43 SING Y N 8  
U4X C12 N1  SING N N 9  
U4X C12 C25 SING N N 10 
U4X C3  C4  SING N N 11 
U4X C60 C61 DOUB Y N 12 
U4X C28 C27 SING N N 13 
U4X C28 O29 SING N N 14 
U4X N1  C6  SING N N 15 
U4X C30 O29 SING N N 16 
U4X C30 C42 SING N N 17 
U4X C43 C42 SING Y N 18 
U4X C43 C44 DOUB Y N 19 
U4X C61 C44 SING Y N 20 
U4X C4  O4  SING N N 21 
U4X C4  C5  SING N N 22 
U4X C42 C41 DOUB Y N 23 
U4X O7  C7  SING N N 24 
U4X C6  C5  SING N N 25 
U4X C6  C7  SING N N 26 
U4X C44 C45 SING Y N 27 
U4X C5  O5  SING N N 28 
U4X C41 C46 SING Y N 29 
U4X C45 C46 DOUB Y N 30 
U4X C45 C55 SING Y N 31 
U4X C46 C52 SING Y N 32 
U4X C55 C54 DOUB Y N 33 
U4X C52 C53 DOUB Y N 34 
U4X C54 C53 SING Y N 35 
U4X C3  H1  SING N N 36 
U4X C2  H2  SING N N 37 
U4X C2  H3  SING N N 38 
U4X C26 H4  SING N N 39 
U4X C26 H5  SING N N 40 
U4X C27 H6  SING N N 41 
U4X C27 H7  SING N N 42 
U4X C28 H8  SING N N 43 
U4X C28 H9  SING N N 44 
U4X C30 H11 SING N N 45 
U4X C30 H12 SING N N 46 
U4X C25 H13 SING N N 47 
U4X C25 H14 SING N N 48 
U4X C12 H15 SING N N 49 
U4X C12 H16 SING N N 50 
U4X C4  H17 SING N N 51 
U4X C5  H18 SING N N 52 
U4X C6  H19 SING N N 53 
U4X C7  H20 SING N N 54 
U4X C7  H21 SING N N 55 
U4X O3  H22 SING N N 56 
U4X O4  H23 SING N N 57 
U4X O5  H24 SING N N 58 
U4X O7  H25 SING N N 59 
U4X C41 H26 SING N N 60 
U4X C58 H27 SING N N 61 
U4X C59 H28 SING N N 62 
U4X C60 H29 SING N N 63 
U4X C61 H30 SING N N 64 
U4X C55 H31 SING N N 65 
U4X C54 H32 SING N N 66 
U4X C53 H33 SING N N 67 
U4X C52 H34 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U4X InChI            InChI                1.06  "InChI=1S/C26H33NO5/c28-16-23-25(30)26(31)24(29)15-27(23)12-6-1-7-13-32-17-19-14-18-8-2-3-9-20(18)22-11-5-4-10-21(19)22/h2-5,8-11,14,23-26,28-31H,1,6-7,12-13,15-17H2/t23-,24+,25-,26-/m1/s1" 
U4X InChIKey         InChI                1.06  ULWVXKHMHFFLQL-XDZVQPMWSA-N                                                                                                                                                                   
U4X SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCCCCOCc2cc3ccccc3c4ccccc24"                                                                                                                           
U4X SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCCCCOCc2cc3ccccc3c4ccccc24"                                                                                                                                  
U4X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(c3c2cccc3)COCCCCCN4C[C@@H]([C@H]([C@@H]([C@H]4CO)O)O)O"                                                                                                                        
U4X SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(c3c2cccc3)COCCCCCN4CC(C(C(C4CO)O)O)O"                                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           U4X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[5-(phenanthren-9-ylmethoxy)pentyl]piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U4X "Create component" 2023-01-25 PDBE 
U4X "Initial release"  2023-09-13 RCSB 
# 
