data_T6X
# 
_chem_comp.id                                    T6X 
_chem_comp.name                                  "(2R)-2-[[6-(5-naphthalen-1-ylpentylamino)-9-propan-2-yl-purin-2-yl]amino]butan-1-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H36 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-21 
_chem_comp.pdbx_modified_date                    2023-09-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        460.614 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     T6X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BUM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
T6X C1  C1  C 0 1 N N N -111.073 55.610 -47.658 -0.055 -0.049 -0.373 C1  T6X 1  
T6X C10 C2  C 0 1 N N R -115.805 58.021 -49.385 -3.358 -3.304 -0.007 C10 T6X 2  
T6X C11 C3  C 0 1 N N N -116.976 57.148 -49.833 -2.780 -3.536 1.391  C11 T6X 3  
T6X C12 C4  C 0 1 N N N -116.069 59.523 -49.507 -3.956 -4.610 -0.534 C12 T6X 4  
T6X C13 C5  C 0 1 N N N -117.027 60.082 -48.501 -4.422 -4.411 -1.978 C13 T6X 5  
T6X C14 C6  C 0 1 N N N -109.997 55.786 -46.605 1.329  0.589  -0.504 C14 T6X 6  
T6X C15 C7  C 0 1 N N N -110.517 56.110 -45.234 2.392  -0.509 -0.571 C15 T6X 7  
T6X C16 C8  C 0 1 N N N -109.482 56.101 -44.122 3.777  0.129  -0.703 C16 T6X 8  
T6X C17 C9  C 0 1 N N N -108.305 57.032 -44.394 4.840  -0.970 -0.770 C17 T6X 9  
T6X C18 C10 C 0 1 Y N N -108.132 58.188 -43.439 6.204  -0.342 -0.899 C18 T6X 10 
T6X C19 C11 C 0 1 Y N N -107.492 58.044 -42.245 6.766  -0.175 -2.127 C19 T6X 11 
T6X C2  C12 C 0 1 Y N N -113.401 54.940 -47.214 -2.410 0.666  -0.188 C2  T6X 12 
T6X C20 C13 C 0 1 Y N N -107.335 59.119 -41.351 8.026  0.404  -2.266 C20 T6X 13 
T6X C21 C14 C 0 1 Y N N -107.823 60.343 -41.664 8.731  0.819  -1.179 C21 T6X 14 
T6X C22 C15 C 0 1 Y N N -108.497 60.561 -42.886 8.182  0.664  0.106  C22 T6X 15 
T6X C23 C16 C 0 1 Y N N -108.656 59.473 -43.789 6.899  0.080  0.247  C23 T6X 16 
T6X C24 C17 C 0 1 Y N N -109.014 61.833 -43.226 8.880  1.080  1.253  C24 T6X 17 
T6X C25 C18 C 0 1 Y N N -109.660 62.029 -44.401 8.317  0.914  2.481  C25 T6X 18 
T6X C26 C19 C 0 1 Y N N -109.823 60.969 -45.300 7.057  0.335  2.620  C26 T6X 19 
T6X C27 C20 C 0 1 Y N N -109.337 59.731 -45.004 6.348  -0.071 1.531  C27 T6X 20 
T6X C3  C21 C 0 1 Y N N -115.136 56.463 -47.595 -4.064 -0.939 -0.001 C3  T6X 21 
T6X C4  C22 C 0 1 Y N N -115.680 54.396 -46.908 -4.740 1.264  -0.001 C4  T6X 22 
T6X C5  C23 C 0 1 Y N N -114.364 53.978 -46.850 -3.399 1.663  -0.124 C5  T6X 23 
T6X C6  C24 C 0 1 Y N N -115.542 52.314 -46.253 -4.605 3.464  -0.060 C6  T6X 24 
T6X C7  C25 C 0 1 N N N -117.887 53.171 -46.414 -6.934 2.515  0.160  C7  T6X 25 
T6X C8  C26 C 0 1 N N N -118.560 53.012 -47.775 -7.289 3.294  1.427  C8  T6X 26 
T6X C9  C27 C 0 1 N N N -118.487 54.294 -45.603 -7.502 3.241  -1.061 C9  T6X 27 
T6X N1  N1  N 0 1 N N N -112.081 54.665 -47.221 -1.073 1.003  -0.308 N1  T6X 28 
T6X N2  N2  N 0 1 Y N N -113.820 56.166 -47.589 -2.785 -0.606 -0.123 N2  T6X 29 
T6X N3  N3  N 0 1 Y N N -116.126 55.605 -47.278 -5.026 -0.033 0.061  N3  T6X 30 
T6X N4  N4  N 0 1 Y N N -114.285 52.656 -46.428 -3.387 3.018  -0.154 N4  T6X 31 
T6X N5  N5  N 0 1 Y N N -116.436 53.310 -46.531 -5.477 2.420  0.037  N5  T6X 32 
T6X N6  N6  N 0 1 N N N -115.479 57.699 -47.993 -4.403 -2.280 0.061  N6  T6X 33 
T6X O1  O1  O 0 1 N N N -117.180 57.222 -51.242 -3.790 -4.084 2.240  O1  T6X 34 
T6X H2  H1  H 0 1 N N N -110.611 55.240 -48.585 -0.245 -0.686 -1.236 H2  T6X 35 
T6X H1  H2  H 0 1 N N N -111.551 56.582 -47.849 -0.094 -0.648 0.537  H1  T6X 36 
T6X H13 H3  H 0 1 N N N -114.938 57.777 -50.017 -2.566 -2.971 -0.677 H13 T6X 37 
T6X H15 H4  H 0 1 N N N -117.889 57.487 -49.322 -1.943 -4.232 1.327  H15 T6X 38 
T6X H14 H5  H 0 1 N N N -116.768 56.104 -49.557 -2.434 -2.588 1.803  H14 T6X 39 
T6X H18 H6  H 0 1 N N N -115.109 60.048 -49.393 -3.201 -5.395 -0.501 H18 T6X 40 
T6X H17 H7  H 0 1 N N N -116.476 59.717 -50.510 -4.806 -4.897 0.086  H17 T6X 41 
T6X H21 H8  H 0 1 N N N -117.149 61.162 -48.671 -5.177 -3.626 -2.011 H21 T6X 42 
T6X H20 H9  H 0 1 N N N -118.001 59.582 -48.605 -3.572 -4.124 -2.597 H20 T6X 43 
T6X H19 H10 H 0 1 N N N -116.634 59.913 -47.487 -4.848 -5.341 -2.353 H19 T6X 44 
T6X H23 H11 H 0 1 N N N -109.421 54.851 -46.542 1.368  1.189  -1.414 H23 T6X 45 
T6X H22 H12 H 0 1 N N N -109.334 56.604 -46.924 1.519  1.227  0.360  H22 T6X 46 
T6X H24 H13 H 0 1 N N N -110.966 57.113 -45.271 2.353  -1.109 0.338  H24 T6X 47 
T6X H25 H14 H 0 1 N N N -111.291 55.371 -44.982 2.202  -1.146 -1.435 H25 T6X 48 
T6X H26 H15 H 0 1 N N N -109.969 56.416 -43.187 3.816  0.728  -1.612 H26 T6X 49 
T6X H27 H16 H 0 1 N N N -109.099 55.076 -44.008 3.967  0.766  0.161  H27 T6X 50 
T6X H28 H17 H 0 1 N N N -107.386 56.429 -44.360 4.801  -1.569 0.140  H28 T6X 51 
T6X H29 H18 H 0 1 N N N -108.433 57.448 -45.404 4.650  -1.607 -1.633 H29 T6X 52 
T6X H30 H19 H 0 1 N N N -107.094 57.077 -41.977 6.228  -0.496 -3.007 H30 T6X 53 
T6X H31 H20 H 0 1 N N N -106.824 58.968 -40.412 8.450  0.525  -3.253 H31 T6X 54 
T6X H32 H21 H 0 1 N N N -107.695 61.162 -40.971 9.707  1.266  -1.302 H32 T6X 55 
T6X H33 H22 H 0 1 N N N -108.892 62.659 -42.540 9.858  1.530  1.160  H33 T6X 56 
T6X H34 H23 H 0 1 N N N -110.050 63.006 -44.644 8.856  1.235  3.360  H34 T6X 57 
T6X H35 H24 H 0 1 N N N -110.338 61.133 -46.235 6.632  0.218  3.606  H35 T6X 58 
T6X H36 H25 H 0 1 N N N -109.474 58.927 -45.712 5.372  -0.517 1.655  H36 T6X 59 
T6X H4  H26 H 0 1 N N N -115.842 51.332 -45.919 -4.885 4.508  -0.057 H4  T6X 60 
T6X H5  H27 H 0 1 N N N -118.082 52.242 -45.859 -7.360 1.513  0.217  H5  T6X 61 
T6X H7  H28 H 0 1 N N N -119.647 52.911 -47.638 -8.373 3.365  1.518  H7  T6X 62 
T6X H6  H29 H 0 1 N N N -118.349 53.897 -48.394 -6.885 2.777  2.297  H6  T6X 63 
T6X H8  H30 H 0 1 N N N -118.169 52.113 -48.275 -6.863 4.296  1.370  H8  T6X 64 
T6X H11 H31 H 0 1 N N N -117.969 54.366 -44.636 -7.249 2.686  -1.965 H11 T6X 65 
T6X H10 H32 H 0 1 N N N -118.375 55.242 -46.150 -8.586 3.312  -0.970 H10 T6X 66 
T6X H9  H33 H 0 1 N N N -119.555 54.093 -45.433 -7.076 4.243  -1.119 H9  T6X 67 
T6X H3  H34 H 0 1 N N N -111.972 53.859 -47.803 -0.810 1.936  -0.351 H3  T6X 68 
T6X H12 H35 H 0 1 N N N -114.714 58.292 -47.744 -5.333 -2.542 0.150  H12 T6X 69 
T6X H16 H36 H 0 1 N N N -117.913 56.669 -51.486 -3.493 -4.256 3.144  H16 T6X 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
T6X O1  C11 SING N N 1  
T6X C11 C10 SING N N 2  
T6X C12 C10 SING N N 3  
T6X C12 C13 SING N N 4  
T6X C10 N6  SING N N 5  
T6X N6  C3  SING N N 6  
T6X C8  C7  SING N N 7  
T6X C1  N1  SING N N 8  
T6X C1  C14 SING N N 9  
T6X C3  N2  SING Y N 10 
T6X C3  N3  DOUB Y N 11 
T6X N2  C2  DOUB Y N 12 
T6X N3  C4  SING Y N 13 
T6X N1  C2  SING N N 14 
T6X C2  C5  SING Y N 15 
T6X C4  C5  DOUB Y N 16 
T6X C4  N5  SING Y N 17 
T6X C5  N4  SING Y N 18 
T6X C14 C15 SING N N 19 
T6X N5  C7  SING N N 20 
T6X N5  C6  SING Y N 21 
T6X N4  C6  DOUB Y N 22 
T6X C7  C9  SING N N 23 
T6X C26 C27 DOUB Y N 24 
T6X C26 C25 SING Y N 25 
T6X C15 C16 SING N N 26 
T6X C27 C23 SING Y N 27 
T6X C25 C24 DOUB Y N 28 
T6X C17 C16 SING N N 29 
T6X C17 C18 SING N N 30 
T6X C23 C18 SING Y N 31 
T6X C23 C22 DOUB Y N 32 
T6X C18 C19 DOUB Y N 33 
T6X C24 C22 SING Y N 34 
T6X C22 C21 SING Y N 35 
T6X C19 C20 SING Y N 36 
T6X C21 C20 DOUB Y N 37 
T6X C1  H2  SING N N 38 
T6X C1  H1  SING N N 39 
T6X C10 H13 SING N N 40 
T6X C11 H15 SING N N 41 
T6X C11 H14 SING N N 42 
T6X C12 H18 SING N N 43 
T6X C12 H17 SING N N 44 
T6X C13 H21 SING N N 45 
T6X C13 H20 SING N N 46 
T6X C13 H19 SING N N 47 
T6X C14 H23 SING N N 48 
T6X C14 H22 SING N N 49 
T6X C15 H24 SING N N 50 
T6X C15 H25 SING N N 51 
T6X C16 H26 SING N N 52 
T6X C16 H27 SING N N 53 
T6X C17 H28 SING N N 54 
T6X C17 H29 SING N N 55 
T6X C19 H30 SING N N 56 
T6X C20 H31 SING N N 57 
T6X C21 H32 SING N N 58 
T6X C24 H33 SING N N 59 
T6X C25 H34 SING N N 60 
T6X C26 H35 SING N N 61 
T6X C27 H36 SING N N 62 
T6X C6  H4  SING N N 63 
T6X C7  H5  SING N N 64 
T6X C8  H7  SING N N 65 
T6X C8  H6  SING N N 66 
T6X C8  H8  SING N N 67 
T6X C9  H11 SING N N 68 
T6X C9  H10 SING N N 69 
T6X C9  H9  SING N N 70 
T6X N1  H3  SING N N 71 
T6X N6  H12 SING N N 72 
T6X O1  H16 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
T6X InChI            InChI                1.06  "InChI=1S/C27H36N6O/c1-4-22(17-34)30-27-31-25(24-26(32-27)33(18-29-24)19(2)3)28-16-9-5-6-11-20-13-10-14-21-12-7-8-15-23(20)21/h7-8,10,12-15,18-19,22,34H,4-6,9,11,16-17H2,1-3H3,(H2,28,30,31,32)/t22-/m1/s1" 
T6X InChIKey         InChI                1.06  VMZLWLKLMRYJFQ-JOCHJYFZSA-N                                                                                                                                                                                  
T6X SMILES_CANONICAL CACTVS               3.385 "CC[C@H](CO)Nc1nc(NCCCCCc2cccc3ccccc23)c4ncn(C(C)C)c4n1"                                                                                                                                                     
T6X SMILES           CACTVS               3.385 "CC[CH](CO)Nc1nc(NCCCCCc2cccc3ccccc23)c4ncn(C(C)C)c4n1"                                                                                                                                                      
T6X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](CO)Nc1nc(c2c(n1)n(cn2)C(C)C)NCCCCCc3cccc4c3cccc4"                                                                                                                                                   
T6X SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(CO)Nc1nc(c2c(n1)n(cn2)C(C)C)NCCCCCc3cccc4c3cccc4"                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           T6X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-[[6-(5-naphthalen-1-ylpentylamino)-9-propan-2-yl-purin-2-yl]amino]butan-1-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
T6X "Create component" 2022-12-21 PDBE 
T6X "Initial release"  2023-09-20 RCSB 
# 
