data_S3X
# 
_chem_comp.id                                    S3X 
_chem_comp.name                                  "(4S)-6-chloro-N-(isoquinolin-4-yl)-2-(2-{[(1S)-1-(4-nitrophenyl)ethyl]amino}-2-oxoethyl)-1,2,3,4-tetrahydroisoquinoline-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H26 Cl N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-22 
_chem_comp.pdbx_modified_date                    2024-01-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        544.001 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S3X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GNO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S3X N1  N1  N  0  1 N N N N N N -20.288 8.775  30.698 3.546  -0.444 -0.253 N1  S3X 1  
S3X N3  N2  N  0  1 N N N N N N -20.289 4.816  26.956 -3.868 -0.380 -0.483 N3  S3X 2  
S3X C4  C1  C  0  1 Y N N N N N -16.642 11.562 29.232 7.621  -1.044 -0.866 C4  S3X 3  
S3X C5  C2  C  0  1 Y N N N N N -17.805 9.049  29.218 6.673  -0.006 1.515  C5  S3X 4  
S3X C6  C3  C  0  1 Y N N N N N -16.858 9.368  28.262 8.020  0.074  1.214  C6  S3X 5  
S3X C7  C4  C  0  1 Y N N N N N -16.286 10.621 28.292 8.494  -0.445 0.023  C7  S3X 6  
S3X C8  C5  C  0  1 N N N N N N -21.312 9.311  30.023 2.285  0.020  -0.151 C8  S3X 7  
S3X C10 C6  C  0  1 N N N N N N -22.605 6.151  28.516 -0.752 0.819  -2.184 C10 S3X 8  
S3X C13 C7  C  0  1 Y N N N N N -19.005 4.899  26.381 -4.308 -1.586 0.065  C13 S3X 9  
S3X C15 C8  C  0  1 Y N N N N N -16.435 5.062  25.411 -5.074 -3.990 1.186  C15 S3X 10 
S3X C17 C9  C  0  1 Y N N N N N -16.723 7.494  24.954 -7.383 -3.636 0.425  C17 S3X 11 
S3X C20 C10 C  0  1 Y N N N N N -19.324 7.349  25.922 -6.612 -1.199 -0.713 C20 S3X 12 
S3X C21 C11 C  0  1 Y N N N N N -18.533 6.171  25.931 -5.658 -1.983 -0.051 C21 S3X 13 
S3X C22 C12 C  0  1 N N N N N N -22.782 6.437  30.895 0.235  2.104  -0.400 C22 S3X 14 
S3X C24 C13 C  0  1 Y N N N N N -22.709 4.377  32.336 -1.261 3.690  0.795  C24 S3X 15 
S3X C26 C14 C  0  1 Y N N N N N -22.367 4.109  29.962 -2.268 2.126  -0.709 C26 S3X 16 
S3X C28 C15 C  0  1 Y N N N N N -22.425 2.201  31.423 -3.632 3.702  0.483  C28 S3X 17 
S3X O3  O1  O  0  1 N N N N N N -21.423 10.523 29.855 1.801  0.227  0.942  O3  S3X 18 
S3X C1  C16 C  0  1 N N S N N N -19.204 9.599  31.248 4.333  -0.698 0.957  C1  S3X 19 
S3X C2  C17 C  0  1 Y N N N N N -18.173 9.961  30.196 5.801  -0.611 0.628  C2  S3X 20 
S3X N   N3  N  1  1 N N N N N N -15.230 10.947 27.319 9.936  -0.359 -0.299 N   S3X 21 
S3X O1  O2  O  -1 1 N N N N N N -14.679 12.032 27.406 10.705 0.169  0.484  O1  S3X 22 
S3X O   O3  O  0  1 N N N N N N -14.946 10.115 26.471 10.353 -0.816 -1.348 O   S3X 23 
S3X C3  C18 C  0  1 Y N N N N N -17.581 11.218 30.187 6.274  -1.125 -0.564 C3  S3X 24 
S3X C   C19 C  0  1 N N N N N N -18.587 8.910  32.461 4.012  -2.096 1.490  C   S3X 25 
S3X C9  C20 C  0  1 N N N N N N -22.362 8.364  29.463 1.475  0.281  -1.395 C9  S3X 26 
S3X N2  N4  N  0  1 N N N N N N -22.139 6.933  29.666 0.145  0.777  -1.018 N2  S3X 27 
S3X C23 C21 C  0  1 Y N N N N N -22.611 4.944  31.065 -1.141 2.643  -0.107 C23 S3X 28 
S3X C27 C22 C  0  1 Y N N N N N -22.305 2.727  30.151 -3.514 2.658  -0.414 C27 S3X 29 
S3X CL  CL1 CL 0  0 N N N N N N -22.349 0.469  31.637 -5.195 4.364  0.848  CL  S3X 30 
S3X C25 C23 C  0  1 Y N N N N N -22.607 3.010  32.522 -2.501 4.219  1.090  C25 S3X 31 
S3X C11 C24 C  0  1 N N S N N N -22.084 4.713  28.595 -2.188 0.981  -1.686 C11 S3X 32 
S3X C12 C25 C  0  1 N N N N N N -20.588 4.699  28.269 -2.628 -0.289 -1.005 C12 S3X 33 
S3X O2  O4  O  0  1 N N N N N N -19.727 4.640  29.141 -1.867 -1.230 -0.927 O2  S3X 34 
S3X C19 C26 C  0  1 Y N N N N N -18.825 8.527  25.440 -7.900 -1.635 -0.792 C19 S3X 35 
S3X C18 C27 C  0  1 Y N N N N N -17.527 8.598  24.955 -8.283 -2.849 -0.225 C18 S3X 36 
S3X C16 C28 C  0  1 Y N N N N N -17.205 6.251  25.433 -6.046 -3.219 0.527  C16 S3X 37 
S3X N4  N5  N  0  1 Y N N N N N -16.880 3.880  25.820 -3.833 -3.568 1.256  N4  S3X 38 
S3X C14 C29 C  0  1 Y N N N N N -18.132 3.819  26.289 -3.433 -2.421 0.729  C14 S3X 39 
S3X H1  H1  H  0  1 N N N N N N -20.260 7.784  30.832 3.932  -0.613 -1.127 H1  S3X 40 
S3X H2  H2  H  0  1 N N N N N N -21.063 4.847  26.324 -4.454 0.393  -0.489 H2  S3X 41 
S3X H3  H3  H  0  1 N N N N N N -16.198 12.546 29.224 7.991  -1.446 -1.798 H3  S3X 42 
S3X H4  H4  H  0  1 N N N N N N -18.266 8.073  29.203 6.302  0.403  2.443  H4  S3X 43 
S3X H5  H5  H  0  1 N N N N N N -16.573 8.650  27.508 8.701  0.543  1.908  H5  S3X 44 
S3X H6  H6  H  0  1 N N N N N N -22.239 6.618  27.589 -0.487 1.664  -2.820 H6  S3X 45 
S3X H7  H7  H  0  1 N N N N N N -23.705 6.137  28.510 -0.663 -0.109 -2.748 H7  S3X 46 
S3X H8  H8  H  0  1 N N N N N N -15.423 5.121  25.038 -5.348 -4.934 1.634  H8  S3X 47 
S3X H9  H9  H  0  1 N N N N N N -15.711 7.569  24.585 -7.694 -4.574 0.860  H9  S3X 48 
S3X H10 H10 H  0  1 N N N N N N -20.335 7.315  26.301 -6.328 -0.256 -1.156 H10 S3X 49 
S3X H11 H11 H  0  1 N N N N N N -22.333 6.946  31.760 0.798  2.030  0.531  H11 S3X 50 
S3X H12 H12 H  0  1 N N N N N N -23.857 6.668  30.851 0.751  2.781  -1.080 H12 S3X 51 
S3X H13 H13 H  0  1 N N N N N N -22.868 5.018  33.191 -0.379 4.094  1.269  H13 S3X 52 
S3X H14 H14 H  0  1 N N N N N N -19.648 10.541 31.604 4.085  0.045  1.714  H14 S3X 53 
S3X H15 H15 H  0  1 N N N N N N -17.860 11.940 30.940 5.592  -1.589 -1.261 H15 S3X 54 
S3X H16 H16 H  0  1 N N N N N N -19.377 8.671  33.189 4.260  -2.839 0.732  H16 S3X 55 
S3X H17 H17 H  0  1 N N N N N N -18.090 7.982  32.142 4.597  -2.285 2.389  H17 S3X 56 
S3X H18 H18 H  0  1 N N N N N N -17.849 9.580  32.927 2.950  -2.159 1.727  H18 S3X 57 
S3X H19 H19 H  0  1 N N N N N N -22.424 8.540  28.379 1.982  1.027  -2.008 H19 S3X 58 
S3X H20 H20 H  0  1 N N N N N N -23.324 8.620  29.931 1.371  -0.644 -1.962 H20 S3X 59 
S3X H22 H22 H  0  1 N N N N N N -22.164 2.071  29.305 -4.396 2.255  -0.889 H22 S3X 60 
S3X H23 H23 H  0  1 N N N N N N -22.669 2.585  33.513 -2.589 5.033  1.794  H23 S3X 61 
S3X H24 H24 H  0  1 N N N N N N -22.608 4.114  27.836 -2.844 1.182  -2.533 H24 S3X 62 
S3X H25 H25 H  0  1 N N N N N N -19.447 9.410  25.437 -8.636 -1.031 -1.302 H25 S3X 63 
S3X H26 H26 H  0  1 N N N N N N -17.149 9.535  24.575 -9.311 -3.171 -0.303 H26 S3X 64 
S3X H27 H27 H  0  1 N N N N N N -18.493 2.857  26.622 -2.396 -2.132 0.821  H27 S3X 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S3X C17 C18 DOUB Y N 1  
S3X C17 C16 SING Y N 2  
S3X C18 C19 SING Y N 3  
S3X C15 C16 DOUB Y N 4  
S3X C15 N4  SING Y N 5  
S3X C16 C21 SING Y N 6  
S3X C19 C20 DOUB Y N 7  
S3X N4  C14 DOUB Y N 8  
S3X C20 C21 SING Y N 9  
S3X C21 C13 DOUB Y N 10 
S3X C14 C13 SING Y N 11 
S3X C13 N3  SING N N 12 
S3X O   N   DOUB N N 13 
S3X N3  C12 SING N N 14 
S3X N   O1  SING N N 15 
S3X N   C7  SING N N 16 
S3X C6  C7  DOUB Y N 17 
S3X C6  C5  SING Y N 18 
S3X C12 C11 SING N N 19 
S3X C12 O2  DOUB N N 20 
S3X C7  C4  SING Y N 21 
S3X C10 C11 SING N N 22 
S3X C10 N2  SING N N 23 
S3X C11 C26 SING N N 24 
S3X C5  C2  DOUB Y N 25 
S3X C4  C3  DOUB Y N 26 
S3X C9  N2  SING N N 27 
S3X C9  C8  SING N N 28 
S3X N2  C22 SING N N 29 
S3X O3  C8  DOUB N N 30 
S3X C26 C27 DOUB Y N 31 
S3X C26 C23 SING Y N 32 
S3X C8  N1  SING N N 33 
S3X C27 C28 SING Y N 34 
S3X C3  C2  SING Y N 35 
S3X C2  C1  SING N N 36 
S3X N1  C1  SING N N 37 
S3X C22 C23 SING N N 38 
S3X C23 C24 DOUB Y N 39 
S3X C1  C   SING N N 40 
S3X C28 CL  SING N N 41 
S3X C28 C25 DOUB Y N 42 
S3X C24 C25 SING Y N 43 
S3X N1  H1  SING N N 44 
S3X N3  H2  SING N N 45 
S3X C4  H3  SING N N 46 
S3X C5  H4  SING N N 47 
S3X C6  H5  SING N N 48 
S3X C10 H6  SING N N 49 
S3X C10 H7  SING N N 50 
S3X C15 H8  SING N N 51 
S3X C17 H9  SING N N 52 
S3X C20 H10 SING N N 53 
S3X C22 H11 SING N N 54 
S3X C22 H12 SING N N 55 
S3X C24 H13 SING N N 56 
S3X C1  H14 SING N N 57 
S3X C3  H15 SING N N 58 
S3X C   H16 SING N N 59 
S3X C   H17 SING N N 60 
S3X C   H18 SING N N 61 
S3X C9  H19 SING N N 62 
S3X C9  H20 SING N N 63 
S3X C27 H22 SING N N 64 
S3X C25 H23 SING N N 65 
S3X C11 H24 SING N N 66 
S3X C19 H25 SING N N 67 
S3X C18 H26 SING N N 68 
S3X C14 H27 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S3X SMILES           ACDLabs              12.01 "[O-][N+](=O)c1ccc(cc1)C(C)NC(=O)CN1Cc2ccc(Cl)cc2C(C1)C(=O)Nc1cncc2ccccc21"                                                                                                                                    
S3X InChI            InChI                1.06  "InChI=1S/C29H26ClN5O4/c1-18(19-7-10-23(11-8-19)35(38)39)32-28(36)17-34-15-21-6-9-22(30)12-25(21)26(16-34)29(37)33-27-14-31-13-20-4-2-3-5-24(20)27/h2-14,18,26H,15-17H2,1H3,(H,32,36)(H,33,37)/t18-,26+/m0/s1" 
S3X InChIKey         InChI                1.06  NSMAAPODQLIULZ-HFJWLAOPSA-N                                                                                                                                                                                    
S3X SMILES_CANONICAL CACTVS               3.385 "C[C@H](NC(=O)CN1C[C@@H](C(=O)Nc2cncc3ccccc23)c4cc(Cl)ccc4C1)c5ccc(cc5)[N+]([O-])=O"                                                                                                                           
S3X SMILES           CACTVS               3.385 "C[CH](NC(=O)CN1C[CH](C(=O)Nc2cncc3ccccc23)c4cc(Cl)ccc4C1)c5ccc(cc5)[N+]([O-])=O"                                                                                                                              
S3X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1ccc(cc1)[N+](=O)[O-])NC(=O)CN2Cc3ccc(cc3[C@@H](C2)C(=O)Nc4cncc5c4cccc5)Cl"                                                                                                                          
S3X SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1ccc(cc1)[N+](=O)[O-])NC(=O)CN2Cc3ccc(cc3C(C2)C(=O)Nc4cncc5c4cccc5)Cl"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
S3X "SYSTEMATIC NAME" ACDLabs              12.01 "(4S)-6-chloro-N-(isoquinolin-4-yl)-2-(2-{[(1S)-1-(4-nitrophenyl)ethyl]amino}-2-oxoethyl)-1,2,3,4-tetrahydroisoquinoline-4-carboxamide"                      
S3X "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{S})-6-chloranyl-~{N}-isoquinolin-4-yl-2-[2-[[(1~{S})-1-(4-nitrophenyl)ethyl]amino]-2-oxidanylidene-ethyl]-3,4-dihydro-1~{H}-isoquinoline-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S3X "Create component" 2023-08-22 RCSB 
S3X "Initial release"  2023-11-08 RCSB 
S3X "Modify charge"    2024-01-23 RCSB 
# 
