data_R9X
# 
_chem_comp.id                                    R9X 
_chem_comp.name                                  "[(R)-(decanoylamino)-naphthalen-1-yl-methyl]phosphonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H30 N O4 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-28 
_chem_comp.pdbx_modified_date                    2023-07-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        391.441 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R9X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BRN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R9X C10 C1  C 0 1 N N N -3.109  51.966 -27.198 0.324  0.290  0.025  C10 R9X 1  
R9X C21 C2  C 0 1 Y N N -7.848  53.743 -28.830 -5.005 -1.634 -2.330 C21 R9X 2  
R9X C22 C3  C 0 1 Y N N -6.823  53.686 -27.941 -4.078 -0.949 -1.606 C22 R9X 3  
R9X C23 C4  C 0 1 Y N N -5.886  54.732 -27.857 -4.077 -1.051 -0.204 C23 R9X 4  
R9X C01 C5  C 0 1 N N N -10.411 53.017 -32.588 11.533 -0.767 0.086  C01 R9X 5  
R9X C02 C6  C 0 1 N N N -10.154 51.806 -33.486 10.224 -0.691 -0.704 C02 R9X 6  
R9X C03 C7  C 0 1 N N N -9.175  50.859 -32.788 9.053  -0.521 0.265  C03 R9X 7  
R9X C04 C8  C 0 1 N N N -7.866  51.601 -32.481 7.745  -0.445 -0.525 C04 R9X 8  
R9X C05 C9  C 0 1 N N N -7.014  50.781 -31.504 6.573  -0.276 0.445  C05 R9X 9  
R9X C06 C10 C 0 1 N N N -5.943  51.662 -30.847 5.265  -0.200 -0.345 C06 R9X 10 
R9X C07 C11 C 0 1 N N N -4.760  50.788 -30.421 4.093  -0.030 0.624  C07 R9X 11 
R9X C08 C12 C 0 1 N N N -3.779  51.583 -29.559 2.785  0.046  -0.166 C08 R9X 12 
R9X C09 C13 C 0 1 N N N -4.236  51.553 -28.103 1.613  0.215  0.803  C09 R9X 13 
R9X C13 C14 C 0 1 N N R -4.359  53.717 -25.894 -2.099 0.513  -0.082 C13 R9X 14 
R9X C14 C15 C 0 1 Y N N -4.784  54.742 -26.961 -3.136 -0.360 0.577  C14 R9X 15 
R9X C15 C16 C 0 1 Y N N -3.964  55.830 -27.001 -3.165 -0.482 1.932  C15 R9X 16 
R9X C16 C17 C 0 1 Y N N -4.127  56.914 -27.855 -4.117 -1.285 2.560  C16 R9X 17 
R9X C17 C18 C 0 1 Y N N -5.164  56.928 -28.725 -5.043 -1.970 1.836  C17 R9X 18 
R9X C18 C19 C 0 1 Y N N -6.060  55.844 -28.742 -5.044 -1.868 0.434  C18 R9X 19 
R9X C19 C20 C 0 1 Y N N -7.133  55.863 -29.650 -5.985 -2.560 -0.348 C19 R9X 20 
R9X C20 C21 C 0 1 Y N N -8.008  54.827 -29.688 -5.960 -2.432 -1.702 C20 R9X 21 
R9X N12 N1  N 0 1 N N N -3.188  52.912 -26.260 -0.847 0.440  0.674  N12 R9X 22 
R9X O11 O1  O 0 1 N N N -2.033  51.447 -27.298 0.342  0.221  -1.186 O11 R9X 23 
R9X O25 O2  O 0 1 N N N -5.423  51.132 -25.421 -3.036 2.667  1.259  O25 R9X 24 
R9X O26 O3  O 0 1 N N N -7.052  53.120 -25.121 -1.531 3.191  -0.698 O26 R9X 25 
R9X O27 O4  O 0 1 N N N -5.161  52.715 -23.516 -3.993 2.341  -1.054 O27 R9X 26 
R9X P24 P1  P 0 1 N N N -5.567  52.637 -25.025 -2.690 2.238  -0.115 P24 R9X 27 
R9X H1  H1  H 0 1 N N N -8.556  52.928 -28.872 -5.004 -1.553 -3.407 H1  R9X 28 
R9X H2  H2  H 0 1 N N N -6.726  52.829 -27.292 -3.347 -0.331 -2.106 H2  R9X 29 
R9X H3  H3  H 0 1 N N N -11.114 53.701 -33.086 11.665 0.151  0.659  H3  R9X 30 
R9X H4  H4  H 0 1 N N N -10.841 52.681 -31.633 11.498 -1.618 0.766  H4  R9X 31 
R9X H5  H5  H 0 1 N N N -9.462  53.541 -32.399 12.367 -0.887 -0.604 H5  R9X 32 
R9X H6  H6  H 0 1 N N N -9.724  52.141 -34.441 10.260 0.161  -1.384 H6  R9X 33 
R9X H7  H7  H 0 1 N N N -11.102 51.281 -33.675 10.092 -1.608 -1.277 H7  R9X 34 
R9X H8  H8  H 0 1 N N N -9.621  50.500 -31.849 9.018  -1.373 0.945  H8  R9X 35 
R9X H9  H9  H 0 1 N N N -8.964  50.002 -33.445 9.185  0.396  0.839  H9  R9X 36 
R9X H10 H10 H 0 1 N N N -7.305  51.752 -33.415 7.780  0.406  -1.204 H10 R9X 37 
R9X H11 H11 H 0 1 N N N -8.098  52.578 -32.031 7.612  -1.363 -1.098 H11 R9X 38 
R9X H12 H12 H 0 1 N N N -7.664  50.360 -30.723 6.538  -1.127 1.124  H12 R9X 39 
R9X H13 H13 H 0 1 N N N -6.523  49.963 -32.052 6.705  0.642  1.018  H13 R9X 40 
R9X H14 H14 H 0 1 N N N -5.599  52.420 -31.566 5.300  0.652  -1.025 H14 R9X 41 
R9X H15 H15 H 0 1 N N N -6.369  52.160 -29.964 5.132  -1.117 -0.919 H15 R9X 42 
R9X H16 H16 H 0 1 N N N -5.135  49.931 -29.843 4.058  -0.882 1.304  H16 R9X 43 
R9X H17 H17 H 0 1 N N N -4.238  50.425 -31.319 4.225  0.887  1.197  H17 R9X 44 
R9X H18 H18 H 0 1 N N N -2.777  51.136 -29.637 2.820  0.897  -0.846 H18 R9X 45 
R9X H19 H19 H 0 1 N N N -3.744  52.625 -29.910 2.652  -0.872 -0.739 H19 R9X 46 
R9X H20 H20 H 0 1 N N N -5.080  52.246 -27.972 1.745  1.133  1.377  H20 R9X 47 
R9X H21 H21 H 0 1 N N N -4.556  50.533 -27.843 1.578  -0.636 1.483  H21 R9X 48 
R9X H22 H22 H 0 1 N N N -4.002  54.346 -25.065 -1.929 0.168  -1.102 H22 R9X 49 
R9X H23 H23 H 0 1 N N N -3.127  55.851 -26.319 -2.441 0.050  2.531  H23 R9X 50 
R9X H24 H24 H 0 1 N N N -3.431  57.739 -27.825 -4.118 -1.365 3.637  H24 R9X 51 
R9X H25 H25 H 0 1 N N N -5.302  57.761 -29.398 -5.774 -2.588 2.335  H25 R9X 52 
R9X H26 H26 H 0 1 N N N -7.261  56.702 -30.317 -6.728 -3.185 0.125  H26 R9X 53 
R9X H27 H27 H 0 1 N N N -8.832  54.844 -30.386 -6.685 -2.965 -2.300 H27 R9X 54 
R9X H28 H28 H 0 1 N N N -2.350  53.094 -25.746 -0.861 0.500  1.643  H28 R9X 55 
R9X H29 H29 H 0 1 N N N -7.602  52.400 -25.406 -0.714 3.179  -0.181 H29 R9X 56 
R9X H30 H30 H 0 1 N N N -4.928  51.848 -23.205 -4.733 1.792  -0.761 H30 R9X 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R9X C02 C03 SING N N 1  
R9X C02 C01 SING N N 2  
R9X C03 C04 SING N N 3  
R9X C04 C05 SING N N 4  
R9X C05 C06 SING N N 5  
R9X C06 C07 SING N N 6  
R9X C07 C08 SING N N 7  
R9X C20 C19 DOUB Y N 8  
R9X C20 C21 SING Y N 9  
R9X C19 C18 SING Y N 10 
R9X C08 C09 SING N N 11 
R9X C21 C22 DOUB Y N 12 
R9X C18 C17 SING Y N 13 
R9X C18 C23 DOUB Y N 14 
R9X C17 C16 DOUB Y N 15 
R9X C09 C10 SING N N 16 
R9X C22 C23 SING Y N 17 
R9X C23 C14 SING Y N 18 
R9X C16 C15 SING Y N 19 
R9X O11 C10 DOUB N N 20 
R9X C10 N12 SING N N 21 
R9X C15 C14 DOUB Y N 22 
R9X C14 C13 SING N N 23 
R9X N12 C13 SING N N 24 
R9X C13 P24 SING N N 25 
R9X O25 P24 DOUB N N 26 
R9X O26 P24 SING N N 27 
R9X P24 O27 SING N N 28 
R9X C21 H1  SING N N 29 
R9X C22 H2  SING N N 30 
R9X C01 H3  SING N N 31 
R9X C01 H4  SING N N 32 
R9X C01 H5  SING N N 33 
R9X C02 H6  SING N N 34 
R9X C02 H7  SING N N 35 
R9X C03 H8  SING N N 36 
R9X C03 H9  SING N N 37 
R9X C04 H10 SING N N 38 
R9X C04 H11 SING N N 39 
R9X C05 H12 SING N N 40 
R9X C05 H13 SING N N 41 
R9X C06 H14 SING N N 42 
R9X C06 H15 SING N N 43 
R9X C07 H16 SING N N 44 
R9X C07 H17 SING N N 45 
R9X C08 H18 SING N N 46 
R9X C08 H19 SING N N 47 
R9X C09 H20 SING N N 48 
R9X C09 H21 SING N N 49 
R9X C13 H22 SING N N 50 
R9X C15 H23 SING N N 51 
R9X C16 H24 SING N N 52 
R9X C17 H25 SING N N 53 
R9X C19 H26 SING N N 54 
R9X C20 H27 SING N N 55 
R9X N12 H28 SING N N 56 
R9X O26 H29 SING N N 57 
R9X O27 H30 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R9X InChI            InChI                1.06  "InChI=1S/C21H30NO4P/c1-2-3-4-5-6-7-8-16-20(23)22-21(27(24,25)26)19-15-11-13-17-12-9-10-14-18(17)19/h9-15,21H,2-8,16H2,1H3,(H,22,23)(H2,24,25,26)/t21-/m1/s1" 
R9X InChIKey         InChI                1.06  QQNUSDSQHYRTKZ-OAQYLSRUSA-N                                                                                                                                   
R9X SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCC(=O)N[C@@H](c1cccc2ccccc12)[P](O)(O)=O"                                                                                                            
R9X SMILES           CACTVS               3.385 "CCCCCCCCCC(=O)N[CH](c1cccc2ccccc12)[P](O)(O)=O"                                                                                                              
R9X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC(=O)N[C@@H](c1cccc2c1cccc2)P(=O)(O)O"                                                                                                              
R9X SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC(=O)NC(c1cccc2c1cccc2)P(=O)(O)O"                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           R9X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(~{R})-(decanoylamino)-naphthalen-1-yl-methyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R9X "Create component"   2022-11-28 PDBE 
R9X "Other modification" 2023-07-14 PDBE 
R9X "Initial release"    2023-08-02 RCSB 
# 
