data_QQX
#

_chem_comp.id                                   QQX
_chem_comp.name                                 "[(3aR,4R,6R,6aR)-4-(6-aminopurin-9-yl)-2-oxidanyl-2-sulfanylidene-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-6-yl]methanol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            ?
_chem_comp.formula                              "C10 H12 N5 O5 P S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "ADENOSINE-2',3'-CYCLOPHOSPHOROTHIOATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-10-30
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       345.272
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    QQX
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2YPC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QQX  OP3     OP3     O  0  1  N  N  N   4.007  -1.093  21.470   2.466   2.705  -1.318  OP3     QQX   1  
QQX  S1P     S1P     S  0  1  N  N  N   1.351  -1.913  21.804   3.464   2.247   1.325  S1P     QQX   2  
QQX  "O5'"   "O5'"   O  0  1  N  N  N   4.485  -3.196  27.310   2.400  -4.410  -0.521  "O5'"   QQX   3  
QQX  "C5'"   "C5'"   C  0  1  N  N  N   4.122  -1.859  27.181   2.599  -3.224   0.251  "C5'"   QQX   4  
QQX  "C4'"   "C4'"   C  0  1  N  N  R   4.325  -1.351  25.790   2.012  -2.024  -0.496  "C4'"   QQX   5  
QQX  "O4'"   "O4'"   O  0  1  N  N  N   5.619  -1.611  25.365   0.583  -2.150  -0.575  "O4'"   QQX   6  
QQX  "C3'"   "C3'"   C  0  1  N  N  R   3.439  -1.985  24.813   2.318  -0.725   0.278  "C3'"   QQX   7  
QQX  "O3'"   "O3'"   O  0  1  N  N  N   3.106  -1.120  23.828   2.996   0.179  -0.628  "O3'"   QQX   8  
QQX  "C2'"   "C2'"   C  0  1  N  N  R   4.243  -3.069  24.177   0.920  -0.124   0.566  "C2'"   QQX   9  
QQX  "O2'"   "O2'"   O  0  1  N  N  N   3.729  -3.209  22.908   0.932   1.290   0.343  "O2'"   QQX  10  
QQX  "C1'"   "C1'"   C  0  1  N  N  R   5.615  -2.519  24.290   0.037  -0.815  -0.499  "C1'"   QQX  11  
QQX  N9      N9      N  0  1  Y  N  N   6.661  -3.488  24.542  -1.361  -0.854  -0.063  N9      QQX  12  
QQX  C8      C8      C  0  1  Y  N  N   6.696  -4.454  25.559  -1.956  -1.850   0.651  C8      QQX  13  
QQX  N7      N7      N  0  1  Y  N  N   7.828  -5.209  25.541  -3.206  -1.559   0.866  N7      QQX  14  
QQX  C5      C5      C  0  1  Y  N  N   8.606  -4.733  24.470  -3.492  -0.360   0.304  C5      QQX  15  
QQX  C6      C6      C  0  1  Y  N  N   9.877  -5.086  23.941  -4.644   0.440   0.215  C6      QQX  16  
QQX  N6      N6      N  0  1  N  N  N  10.649  -6.142  24.517  -5.835   0.033   0.790  N6      QQX  17  
QQX  N1      N1      N  0  1  Y  N  N  10.297  -4.366  22.881  -4.562   1.598  -0.433  N1      QQX  18  
QQX  C2      C2      C  0  1  Y  N  N   9.607  -3.380  22.337  -3.430   1.995  -0.984  C2      QQX  19  
QQX  C4      C4      C  0  1  Y  N  N   7.873  -3.646  23.854  -2.311   0.109  -0.295  C4      QQX  20  
QQX  N3      N3      N  0  1  Y  N  N   8.423  -3.027  22.799  -2.327   1.278  -0.927  N3      QQX  21  
QQX  P       P       P  0  1  N  N  S   3.140  -1.843  22.495   2.456   1.633  -0.116  P       QQX  22  
QQX  HP3     HP3     H  0  1  N  N  N   3.470  -0.834  20.730   3.347   2.899  -1.664  HP3     QQX  23  
QQX  "H5'"   "H5'"   H  0  1  N  N  N   4.341  -3.479  28.205   2.748  -5.212  -0.108  "H5'"   QQX  24  
QQX  "H5'1"  "H5'1"  H  0  0  N  N  N   3.059  -1.753  27.445   2.102  -3.331   1.215  "H5'1"  QQX  25  
QQX  "H5'2"  "H5'2"  H  0  0  N  N  N   4.733  -1.258  27.870   3.666  -3.068   0.408  "H5'2"  QQX  26  
QQX  "H4'"   "H4'"   H  0  1  N  N  N   4.140  -0.267  25.786   2.436  -1.969  -1.499  "H4'"   QQX  27  
QQX  "H3'"   "H3'"   H  0  1  N  N  N   2.556  -2.411  25.312   2.894  -0.908   1.185  "H3'"   QQX  28  
QQX  "H1'"   "H1'"   H  0  1  N  N  N   5.849  -1.981  23.359   0.127  -0.308  -1.460  "H1'"   QQX  29  
QQX  "H2'"   "H2'"   H  0  1  N  N  N   4.155  -3.998  24.760   0.591  -0.360   1.578  "H2'"   QQX  30  
QQX  H8      H8      H  0  1  N  N  N   5.905  -4.585  26.283  -1.463  -2.750   0.990  H8      QQX  31  
QQX  H61N    H61N    H  0  0  N  N  N  11.508  -6.240  24.015  -5.882  -0.814   1.260  H61N    QQX  32  
QQX  H62N    H62N    H  0  0  N  N  N  10.845  -5.928  25.474  -6.623   0.595   0.722  H62N    QQX  33  
QQX  H2      H2      H  0  1  N  N  N  10.022  -2.850  21.493  -3.408   2.943  -1.501  H2      QQX  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QQX  OP3    P       SING  N  N   1  
QQX  S1P    P       DOUB  N  N   2  
QQX  "O5'"  "C5'"   SING  N  N   3  
QQX  "C5'"  "C4'"   SING  N  N   4  
QQX  "C4'"  "O4'"   SING  N  N   5  
QQX  "C4'"  "C3'"   SING  N  N   6  
QQX  "O4'"  "C1'"   SING  N  N   7  
QQX  "C3'"  "O3'"   SING  N  N   8  
QQX  "C3'"  "C2'"   SING  N  N   9  
QQX  "O3'"  P       SING  N  N  10  
QQX  "C2'"  "O2'"   SING  N  N  11  
QQX  "C2'"  "C1'"   SING  N  N  12  
QQX  "O2'"  P       SING  N  N  13  
QQX  "C1'"  N9      SING  N  N  14  
QQX  N9     C8      SING  Y  N  15  
QQX  N9     C4      SING  Y  N  16  
QQX  C8     N7      DOUB  Y  N  17  
QQX  N7     C5      SING  Y  N  18  
QQX  C5     C6      DOUB  Y  N  19  
QQX  C5     C4      SING  Y  N  20  
QQX  N3     C4      DOUB  Y  N  21  
QQX  C6     N6      SING  N  N  22  
QQX  C6     N1      SING  Y  N  23  
QQX  N1     C2      DOUB  Y  N  24  
QQX  C2     N3      SING  Y  N  25  
QQX  OP3    HP3     SING  N  N  26  
QQX  "O5'"  "H5'"   SING  N  N  27  
QQX  "C5'"  "H5'1"  SING  N  N  28  
QQX  "C5'"  "H5'2"  SING  N  N  29  
QQX  "C4'"  "H4'"   SING  N  N  30  
QQX  "C3'"  "H3'"   SING  N  N  31  
QQX  "C1'"  "H1'"   SING  N  N  32  
QQX  "C2'"  "H2'"   SING  N  N  33  
QQX  C8     H8      SING  N  N  34  
QQX  N6     H61N    SING  N  N  35  
QQX  N6     H62N    SING  N  N  36  
QQX  C2     H2      SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QQX  SMILES            ACDLabs               12.01  "S=P1(OC2C(OC(C2O1)CO)n3c4ncnc(N)c4nc3)O"  
QQX  InChI             InChI                 1.03   "InChI=1S/C10H12N5O5PS/c11-8-5-9(13-2-12-8)15(3-14-5)10-7-6(4(1-16)18-10)19-21(17,22)20-7/h2-4,6-7,10,16H,1H2,(H,17,22)(H2,11,12,13)/t4-,6-,7-,10-,21+/m1/s1"  
QQX  InChIKey          InChI                 1.03   OMSUUENXGWGOLC-LHKKBNDGSA-N  
QQX  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@H]4O[P@](O)(=S)O[C@@H]34"  
QQX  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH]4O[P](O)(=S)O[CH]34"  
QQX  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)CO)O[P@](=S)(O4)O)N"  
QQX  SMILES            "OpenEye OEToolkits"  1.9.2  "c1nc(c2c(n1)n(cn2)C3C4C(C(O3)CO)OP(=S)(O4)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
QQX  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S,3aR,4R,6R,6aR)-4-(6-amino-9H-purin-9-yl)-6-(hydroxymethyl)tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-2-ol 2-sulfide"  
QQX  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "[(2S,3aR,4R,6R,6aR)-4-(6-aminopurin-9-yl)-2-oxidanyl-2-sulfanylidene-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-6-yl]methanol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QQX  "Create component"   2012-10-30  EBI   
QQX  "Initial release"    2013-07-10  RCSB  
QQX  "Modify descriptor"  2014-09-05  RCSB  
QQX  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     QQX
_pdbx_chem_comp_synonyms.name        "ADENOSINE-2',3'-CYCLOPHOSPHOROTHIOATE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
