data_OKX
# 
_chem_comp.id                                    OKX 
_chem_comp.name                                  "[(2~{R},3~{R},4~{R},5~{R})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H30 N10 O19 P4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-11 
_chem_comp.pdbx_modified_date                    2023-05-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        850.414 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OKX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7V0R 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OKX N1  N1  N 0 1 N N N 4.013  27.430 21.184 -4.058  -2.684 -0.228 N1  OKX 1  
OKX C1  C1  C 0 1 N N N 2.708  27.349 20.895 -2.889  -2.877 0.465  C1  OKX 2  
OKX N2  N2  N 0 1 N N N 2.026  28.452 20.590 -1.868  -2.084 0.228  N2  OKX 3  
OKX C2  C2  C 0 1 Y N N 0.724  28.186 20.332 -0.711  -2.231 0.883  C2  OKX 4  
OKX C3  C3  C 0 1 Y N N 0.078  26.973 20.354 -0.580  -3.244 1.840  C3  OKX 5  
OKX N3  N3  N 0 1 Y N N -1.264 27.130 20.028 0.677   -3.164 2.341  N3  OKX 6  
OKX C4  C4  C 0 1 Y N N -1.403 28.419 19.816 1.310   -2.186 1.762  C4  OKX 7  
OKX N4  N4  N 0 1 Y N N -0.232 29.107 19.994 0.492   -1.579 0.854  N4  OKX 8  
OKX C5  C5  C 0 1 N N R -0.021 30.539 19.833 0.838   -0.439 0.002  C5  OKX 9  
OKX O1  O1  O 0 1 N N N 0.853  30.714 18.742 2.272   -0.295 -0.097 O1  OKX 10 
OKX C6  C6  C 0 1 N N R 1.907  31.650 19.074 2.531   1.064  -0.486 C6  OKX 11 
OKX C7  C7  C 0 1 N N N 3.232  30.930 19.045 3.828   1.552  0.163  C7  OKX 12 
OKX O2  O2  O 0 1 N N N 3.845  30.989 20.355 4.933   0.823  -0.375 O2  OKX 13 
OKX P1  P1  P 0 1 N N N 5.378  30.648 20.566 6.456   1.076  0.081  P1  OKX 14 
OKX O3  O3  O 0 1 N N N 5.533  29.636 21.666 6.626   0.672  1.630  O3  OKX 15 
OKX O4  O4  O 0 1 N N N 6.153  31.926 20.718 6.793   2.507  -0.095 O4  OKX 16 
OKX C8  C8  C 0 1 N N N 5.857  29.843 19.007 7.574   0.059  -0.938 C8  OKX 17 
OKX P2  P2  P 0 1 N N N 7.553  30.148 18.430 9.298   0.345  -0.421 P2  OKX 18 
OKX O5  O5  O 0 1 N N N 8.387  30.553 19.613 9.665   1.901  -0.613 O5  OKX 19 
OKX O6  O6  O 0 1 N N N 8.012  28.922 17.692 9.454   -0.026 1.003  O6  OKX 20 
OKX O7  O7  O 0 1 N N N 7.430  31.359 17.409 10.285  -0.554 -1.322 O7  OKX 21 
OKX P3  P3  P 0 1 N N N 7.577  32.957 17.564 11.881  -0.757 -1.370 P3  OKX 22 
OKX O8  O8  O 0 1 N N N 8.644  33.371 16.587 12.401  -0.909 0.007  O8  OKX 23 
OKX O9  O9  O 0 1 N N N 7.974  33.210 18.994 12.229  -2.077 -2.223 O9  OKX 24 
OKX O10 O10 O 0 1 N N N 6.224  33.525 17.225 12.564  0.526  -2.063 O10 OKX 25 
OKX C9  C9  C 0 1 N N R 1.505  32.271 20.418 1.346   1.916  0.008  C9  OKX 26 
OKX O11 O11 O 0 1 N N N 0.829  33.506 20.218 0.709   2.571  -1.091 O11 OKX 27 
OKX C10 C10 C 0 1 N N R 0.607  31.213 21.048 0.386   0.891  0.658  C10 OKX 28 
OKX O12 O12 O 0 1 N N N -0.376 31.888 21.831 -0.973  1.185  0.329  O12 OKX 29 
OKX P4  P4  P 0 1 N N N -0.990 31.026 23.039 -2.129  1.344  1.439  P4  OKX 30 
OKX O13 O13 O 0 1 N N N -2.262 31.680 23.501 -2.356  -0.066 2.183  O13 OKX 31 
OKX O14 O14 O 0 1 N N N -1.054 29.573 22.657 -1.724  2.366  2.430  O14 OKX 32 
OKX O15 O15 O 0 1 N N N 0.099  31.209 24.205 -3.499  1.800  0.725  O15 OKX 33 
OKX C11 C11 C 0 1 N N N 0.867  32.434 24.295 -4.684  2.126  1.454  C11 OKX 34 
OKX C12 C12 C 0 1 N N R 2.288  32.101 24.679 -5.793  2.517  0.474  C12 OKX 35 
OKX O16 O16 O 0 1 N N N 2.279  30.961 25.576 -6.173  1.376  -0.313 O16 OKX 36 
OKX C13 C13 C 0 1 N N R 3.265  30.027 25.198 -7.590  1.493  -0.568 C13 OKX 37 
OKX N5  N5  N 0 1 Y N N 2.613  28.846 24.648 -8.162  0.188  -0.906 N5  OKX 38 
OKX C14 C14 C 0 1 Y N N 1.535  28.810 23.802 -7.655  -1.030 -0.560 C14 OKX 39 
OKX N6  N6  N 0 1 Y N N 1.171  27.597 23.474 -8.420  -1.977 -1.020 N6  OKX 40 
OKX C15 C15 C 0 1 Y N N 2.072  26.778 24.138 -9.463  -1.429 -1.689 C15 OKX 41 
OKX C16 C16 C 0 1 Y N N 2.216  25.380 24.194 -10.575 -1.943 -2.377 C16 OKX 42 
OKX N7  N7  N 0 1 N N N 1.427  24.527 23.547 -10.779 -3.309 -2.474 N7  OKX 43 
OKX N8  N8  N 0 1 Y N N 3.221  24.888 24.955 -11.428 -1.088 -2.932 N8  OKX 44 
OKX C17 C17 C 0 1 Y N N 4.012  25.749 25.606 -11.242 0.217  -2.844 C17 OKX 45 
OKX N9  N9  N 0 1 Y N N 3.970  27.077 25.627 -10.215 0.743  -2.210 N9  OKX 46 
OKX C18 C18 C 0 1 Y N N 2.967  27.537 24.865 -9.310  -0.034 -1.624 C18 OKX 47 
OKX C19 C19 C 0 1 N N R 4.185  30.730 24.205 -8.157  2.010  0.778  C19 OKX 48 
OKX O17 O17 O 0 1 N N N 5.249  31.373 24.869 -9.386  2.711  0.578  O17 OKX 49 
OKX C20 C20 C 0 1 N N S 3.221  31.706 23.528 -7.042  2.973  1.252  C20 OKX 50 
OKX O18 O18 O 0 1 N N N 3.912  32.831 22.999 -7.373  4.323  0.919  O18 OKX 51 
OKX C21 C21 C 0 1 N N N 0.806  25.804 20.681 -1.686  -4.091 2.085  C21 OKX 52 
OKX O19 O19 O 0 1 N N N 0.394  24.638 20.749 -1.617  -4.986 2.909  O19 OKX 53 
OKX N10 N10 N 0 1 N N N 2.145  26.097 20.943 -2.823  -3.881 1.384  N10 OKX 54 
OKX H1  H1  H 0 1 N N N 4.474  28.317 21.171 -4.821  -3.259 -0.061 H1  OKX 55 
OKX H2  H2  H 0 1 N N N 4.527  26.603 21.413 -4.122  -1.971 -0.882 H2  OKX 56 
OKX H3  H3  H 0 1 N N N -2.336 28.884 19.533 2.329   -1.896 1.970  H3  OKX 57 
OKX H4  H4  H 0 1 N N N -0.984 31.027 19.625 0.393   -0.550 -0.987 H4  OKX 58 
OKX H5  H5  H 0 1 N N N 1.930  32.451 18.321 2.609   1.131  -1.571 H5  OKX 59 
OKX H6  H6  H 0 1 N N N 3.072  29.879 18.763 3.960   2.615  -0.042 H6  OKX 60 
OKX H7  H7  H 0 1 N N N 3.894  31.410 18.309 3.778   1.393  1.240  H7  OKX 61 
OKX H8  H8  H 0 1 N N N 6.128  29.973 22.326 6.422   -0.254 1.820  H8  OKX 62 
OKX H9  H9  H 0 1 N N N 5.169  30.193 18.224 7.325   -0.995 -0.808 H9  OKX 63 
OKX H10 H10 H 0 1 N N N 5.739  28.758 19.140 7.458   0.332  -1.987 H10 OKX 64 
OKX H11 H11 H 0 1 N N N 9.108  29.943 19.716 9.584   2.214  -1.525 H11 OKX 65 
OKX H12 H12 H 0 1 N N N 8.843  33.593 19.019 13.175  -2.261 -2.294 H12 OKX 66 
OKX H13 H13 H 0 1 N N N 6.290  34.054 16.438 12.270  0.687  -2.970 H13 OKX 67 
OKX H14 H14 H 0 1 N N N 2.402  32.409 21.039 1.681   2.646  0.745  H14 OKX 68 
OKX H15 H15 H 0 1 N N N 0.588  33.875 21.059 1.283   3.183  -1.571 H15 OKX 69 
OKX H16 H16 H 0 1 N N N 1.196  30.495 21.637 0.525   0.858  1.738  H16 OKX 70 
OKX H17 H17 H 0 1 N N N -2.969 31.045 23.485 -2.624  -0.784 1.593  H17 OKX 71 
OKX H18 H18 H 0 1 N N N 0.859  32.946 23.321 -5.002  1.262  2.036  H18 OKX 72 
OKX H19 H19 H 0 1 N N N 0.424  33.091 25.058 -4.481  2.962  2.124  H19 OKX 73 
OKX H20 H20 H 0 1 N N N 2.725  32.969 25.195 -5.446  3.318  -0.178 H20 OKX 74 
OKX H21 H21 H 0 1 N N N 3.861  29.736 26.076 -7.778  2.212  -1.365 H21 OKX 75 
OKX H22 H22 H 0 1 N N N 1.035  29.697 23.441 -6.753  -1.185 0.012  H22 OKX 76 
OKX H23 H23 H 0 1 N N N 1.721  23.590 23.738 -10.150 -3.923 -2.065 H23 OKX 77 
OKX H24 H24 H 0 1 N N N 0.483  24.649 23.853 -11.550 -3.651 -2.952 H24 OKX 78 
OKX H25 H25 H 0 1 N N N 4.796  25.301 26.199 -11.959 0.876  -3.310 H25 OKX 79 
OKX H26 H26 H 0 1 N N N 4.555  30.004 23.466 -8.290  1.190  1.485  H26 OKX 80 
OKX H27 H27 H 0 1 N N N 5.813  30.722 25.269 -9.781  3.054  1.392  H27 OKX 81 
OKX H28 H28 H 0 1 N N N 2.648  31.184 22.747 -6.881  2.872  2.325  H28 OKX 82 
OKX H29 H29 H 0 1 N N N 3.291  33.419 22.586 -8.185  4.643  1.336  H29 OKX 83 
OKX H30 H30 H 0 1 N N N 2.743  25.333 21.185 -3.596  -4.446 1.539  H30 OKX 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OKX O8  P3  DOUB N N 1  
OKX O10 P3  SING N N 2  
OKX O7  P3  SING N N 3  
OKX O7  P2  SING N N 4  
OKX P3  O9  SING N N 5  
OKX O6  P2  DOUB N N 6  
OKX P2  C8  SING N N 7  
OKX P2  O5  SING N N 8  
OKX O1  C6  SING N N 9  
OKX O1  C5  SING N N 10 
OKX C8  P1  SING N N 11 
OKX C7  C6  SING N N 12 
OKX C7  O2  SING N N 13 
OKX C6  C9  SING N N 14 
OKX C4  N4  SING Y N 15 
OKX C4  N3  DOUB Y N 16 
OKX C5  N4  SING N N 17 
OKX C5  C10 SING N N 18 
OKX N4  C2  SING Y N 19 
OKX N3  C3  SING Y N 20 
OKX O11 C9  SING N N 21 
OKX C2  C3  DOUB Y N 22 
OKX C2  N2  SING N N 23 
OKX C3  C21 SING N N 24 
OKX O2  P1  SING N N 25 
OKX C9  C10 SING N N 26 
OKX P1  O4  DOUB N N 27 
OKX P1  O3  SING N N 28 
OKX N2  C1  DOUB N N 29 
OKX C21 O19 DOUB N N 30 
OKX C21 N10 SING N N 31 
OKX C1  N10 SING N N 32 
OKX C1  N1  SING N N 33 
OKX C10 O12 SING N N 34 
OKX O12 P4  SING N N 35 
OKX O14 P4  DOUB N N 36 
OKX O18 C20 SING N N 37 
OKX P4  O13 SING N N 38 
OKX P4  O15 SING N N 39 
OKX N6  C14 DOUB Y N 40 
OKX N6  C15 SING Y N 41 
OKX C20 C19 SING N N 42 
OKX C20 C12 SING N N 43 
OKX N7  C16 SING N N 44 
OKX C14 N5  SING Y N 45 
OKX C15 C16 DOUB Y N 46 
OKX C15 C18 SING Y N 47 
OKX C16 N8  SING Y N 48 
OKX O15 C11 SING N N 49 
OKX C19 O17 SING N N 50 
OKX C19 C13 SING N N 51 
OKX C11 C12 SING N N 52 
OKX N5  C18 SING Y N 53 
OKX N5  C13 SING N N 54 
OKX C12 O16 SING N N 55 
OKX C18 N9  DOUB Y N 56 
OKX N8  C17 DOUB Y N 57 
OKX C13 O16 SING N N 58 
OKX C17 N9  SING Y N 59 
OKX N1  H1  SING N N 60 
OKX N1  H2  SING N N 61 
OKX C4  H3  SING N N 62 
OKX C5  H4  SING N N 63 
OKX C6  H5  SING N N 64 
OKX C7  H6  SING N N 65 
OKX C7  H7  SING N N 66 
OKX O3  H8  SING N N 67 
OKX C8  H9  SING N N 68 
OKX C8  H10 SING N N 69 
OKX O5  H11 SING N N 70 
OKX O9  H12 SING N N 71 
OKX O10 H13 SING N N 72 
OKX C9  H14 SING N N 73 
OKX O11 H15 SING N N 74 
OKX C10 H16 SING N N 75 
OKX O13 H17 SING N N 76 
OKX C11 H18 SING N N 77 
OKX C11 H19 SING N N 78 
OKX C12 H20 SING N N 79 
OKX C13 H21 SING N N 80 
OKX C14 H22 SING N N 81 
OKX N7  H23 SING N N 82 
OKX N7  H24 SING N N 83 
OKX C17 H25 SING N N 84 
OKX C19 H26 SING N N 85 
OKX O17 H27 SING N N 86 
OKX C20 H28 SING N N 87 
OKX O18 H29 SING N N 88 
OKX N10 H30 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OKX InChI            InChI                1.03  "InChI=1S/C21H30N10O19P4/c22-15-9-16(25-3-24-15)30(4-26-9)19-13(34)11(32)7(47-19)2-46-54(43,44)49-14-12(33)8(1-45-51(36,37)6-52(38,39)50-53(40,41)42)48-20(14)31-5-27-10-17(31)28-21(23)29-18(10)35/h3-5,7-8,11-14,19-20,32-34H,1-2,6H2,(H,36,37)(H,38,39)(H,43,44)(H2,22,24,25)(H2,40,41,42)(H3,23,28,29,35)/t7-,8-,11-,12-,13-,14-,19-,20-/m1/s1" 
OKX InChIKey         InChI                1.03  MOGLXPLTEXRGML-XPWFQUROSA-N                                                                                                                                                                                                                                                                                                                         
OKX SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56"                                                                                                                                                                                                 
OKX SMILES           CACTVS               3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56"                                                                                                                                                                                                            
OKX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O[C@@H]4[C@@H]([C@H](O[C@H]4n5cnc6c5N=C(NC6=O)N)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O)O)N"                                                                                                                                                                                                    
OKX SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC4C(C(OC4n5cnc6c5N=C(NC6=O)N)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O)O)N"                                                                                                                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           OKX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{R},4~{R},5~{R})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OKX "Create component" 2022-05-11 RCSB 
OKX "Initial release"  2023-05-10 RCSB 
# 
