data_N5X
# 
_chem_comp.id                                    N5X 
_chem_comp.name                                  "3-[(4-chlorophenyl)carbonylamino]-4-[4-(2,5-dimethylphenyl)piperazin-1-yl]benzoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H26 Cl N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-11 
_chem_comp.pdbx_modified_date                    2023-12-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        463.956 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N5X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8HUF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N5X CL1 CL1 CL 0 0 N N N N N N 11.354 14.533 -30.462 -3.877 -6.152 -0.243 CL  N5X 1  
N5X C21 C1  C  0 1 Y N N N N N 13.110 14.053 -30.426 -3.594 -4.447 -0.083 C21 N5X 2  
N5X C20 C2  C  0 1 Y N N N N N 13.703 13.789 -31.656 -4.549 -3.642 0.518  C20 N5X 3  
N5X C19 C3  C  0 1 Y N N N N N 15.019 13.417 -31.750 -4.330 -2.287 0.647  C19 N5X 4  
N5X C22 C4  C  0 1 Y N N N N N 13.888 13.926 -29.256 -2.413 -3.897 -0.551 C22 N5X 5  
N5X C23 C5  C  0 1 Y N N N N N 15.227 13.563 -29.335 -2.182 -2.543 -0.426 C23 N5X 6  
N5X C18 C6  C  0 1 Y N N N N N 15.760 13.290 -30.593 -3.143 -1.726 0.172  C18 N5X 7  
N5X C17 C7  C  0 1 N N N N N N 17.178 12.952 -30.773 -2.902 -0.275 0.308  C17 N5X 8  
N5X O2  O1  O  0 1 N N N N N N 17.609 12.444 -31.803 -3.739 0.434  0.835  O2  N5X 9  
N5X N2  N1  N  0 1 N N N N N N 17.888 13.351 -29.744 -1.756 0.264  -0.152 N2  N5X 10 
N5X C11 C8  C  0 1 Y N N N N N 19.258 13.225 -29.648 -1.576 1.654  -0.128 C11 N5X 11 
N5X C12 C9  C  0 1 Y N N N N N 19.905 12.220 -30.330 -2.674 2.493  -0.139 C12 N5X 12 
N5X C13 C10 C  0 1 Y N N N N N 21.266 12.137 -30.221 -2.490 3.879  -0.116 C13 N5X 13 
N5X C16 C11 C  0 1 N N N N N N 21.902 11.039 -30.985 -3.658 4.779  -0.126 C16 N5X 14 
N5X O1  O2  O  0 1 N N N N N N 22.838 10.370 -30.497 -3.480 6.114  -0.104 O1  N5X 15 
N5X O3  O3  O  0 1 N N N N N N 21.430 10.848 -32.123 -4.781 4.316  -0.155 O   N5X 16 
N5X C14 C12 C  0 1 Y N N N N N 22.008 13.036 -29.457 -1.197 4.411  -0.082 C14 N5X 17 
N5X C15 C13 C  0 1 Y N N N N N 21.355 14.057 -28.778 -0.106 3.570  -0.072 C15 N5X 18 
N5X C10 C14 C  0 1 Y N N N N N 19.964 14.153 -28.868 -0.287 2.192  -0.089 C10 N5X 19 
N5X N1  N2  N  0 1 N N N N N N 19.296 15.182 -28.194 0.819  1.346  -0.073 N1  N5X 20 
N5X C7  C15 C  0 1 N N N N N N 19.700 15.571 -26.856 1.683  1.587  -1.237 C7  N5X 21 
N5X C6  C16 C  0 1 N N N N N N 20.071 17.015 -27.093 2.842  0.586  -1.224 C6  N5X 22 
N5X C8  C17 C  0 1 N N N N N N 18.216 15.927 -28.854 1.574  1.491  1.180  C8  N5X 23 
N5X C9  C18 C  0 1 N N N N N N 17.661 16.962 -27.893 2.733  0.490  1.192  C9  N5X 24 
N5X N3  N3  N  0 1 N N N N N N 18.825 17.712 -27.443 3.597  0.731  0.028  N   N5X 25 
N5X C5  C19 C  0 1 Y N N N N N 18.792 19.110 -27.387 4.706  -0.117 0.045  C5  N5X 26 
N5X C   C20 C  0 1 Y N N N N N 19.986 19.778 -27.760 4.530  -1.495 0.016  C   N5X 27 
N5X C4  C21 C  0 1 Y N N N N N 17.666 19.853 -26.972 5.989  0.414  0.084  C4  N5X 28 
N5X C24 C22 C  0 1 N N N N N N 16.327 19.298 -26.538 6.186  1.908  0.109  C24 N5X 29 
N5X C3  C23 C  0 1 Y N N N N N 17.772 21.242 -26.973 7.084  -0.428 0.100  C3  N5X 30 
N5X C2  C24 C  0 1 Y N N N N N 18.960 21.888 -27.359 6.904  -1.798 0.077  C2  N5X 31 
N5X C1  C25 C  0 1 Y N N N N N 20.092 21.168 -27.745 5.628  -2.331 0.032  C1  N5X 32 
N5X C25 C26 C  0 1 N N N N N N 21.371 21.885 -28.146 5.438  -3.826 0.001  C25 N5X 33 
N5X H1  H1  H  0 1 N N N N N N 13.114 13.879 -32.557 -5.466 -4.078 0.885  H1  N5X 34 
N5X H2  H2  H  0 1 N N N N N N 15.468 13.227 -32.713 -5.075 -1.661 1.116  H2  N5X 35 
N5X H3  H3  H  0 1 N N N N N N 13.439 14.112 -28.291 -1.670 -4.529 -1.015 H3  N5X 36 
N5X H4  H4  H  0 1 N N N N N N 15.837 13.494 -28.447 -1.260 -2.115 -0.792 H4  N5X 37 
N5X H5  H5  H  0 1 N N N N N N 17.403 13.775 -28.979 -1.055 -0.310 -0.498 H5  N5X 38 
N5X H6  H6  H  0 1 N N N N N N 19.353 11.516 -30.935 -3.671 2.080  -0.165 H6  N5X 39 
N5X H7  H7  H  0 1 N N N N N N 23.118 9.713  -31.123 -4.276 6.663  -0.112 H7  N5X 40 
N5X H8  H8  H  0 1 N N N N N N 23.082 12.940 -29.393 -1.054 5.481  -0.065 H8  N5X 41 
N5X H9  H9  H  0 1 N N N N N N 21.915 14.767 -28.188 0.891  3.983  -0.046 H9  N5X 42 
N5X H10 H10 H  0 1 N N N N N N 18.872 15.476 -26.138 1.104  1.462  -2.151 H10 N5X 43 
N5X H11 H11 H  0 1 N N N N N N 20.560 14.983 -26.504 2.078  2.602  -1.192 H11 N5X 44 
N5X H12 H12 H  0 1 N N N N N N 20.794 17.091 -27.918 2.447  -0.427 -1.296 H12 N5X 45 
N5X H13 H13 H  0 1 N N N N N N 20.507 17.450 -26.182 3.500  0.782  -2.071 H13 N5X 46 
N5X H14 H14 H  0 1 N N N N N N 18.610 16.431 -29.749 1.968  2.504  1.252  H14 N5X 47 
N5X H15 H15 H  0 1 N N N N N N 17.416 15.232 -29.147 0.916  1.295  2.026  H15 N5X 48 
N5X H16 H16 H  0 1 N N N N N N 16.948 17.624 -28.406 3.311  0.616  2.107  H16 N5X 49 
N5X H17 H17 H  0 1 N N N N N N 17.162 16.474 -27.043 2.337  -0.524 1.148  H17 N5X 50 
N5X H18 H18 H  0 1 N N N N N N 20.840 19.192 -28.065 3.534  -1.912 -0.019 H18 N5X 51 
N5X H19 H19 H  0 1 N N N N N N 16.333 19.133 -25.451 6.207  2.254  1.143  H19 N5X 52 
N5X H20 H20 H  0 1 N N N N N N 15.533 20.014 -26.795 7.128  2.159  -0.378 H20 N5X 53 
N5X H21 H21 H  0 1 N N N N N N 16.141 18.344 -27.053 5.364  2.392  -0.419 H21 N5X 54 
N5X H22 H22 H  0 1 N N N N N N 16.922 21.836 -26.670 8.081  -0.015 0.130  H22 N5X 55 
N5X H23 H23 H  0 1 N N N N N N 18.998 22.967 -27.357 7.762  -2.454 0.089  H23 N5X 56 
N5X H24 H24 H  0 1 N N N N N N 21.355 22.087 -29.227 5.420  -4.168 -1.033 H24 N5X 57 
N5X H25 H25 H  0 1 N N N N N N 21.446 22.835 -27.597 6.260  -4.308 0.530  H25 N5X 58 
N5X H26 H26 H  0 1 N N N N N N 22.237 21.252 -27.904 4.495  -4.082 0.485  H26 N5X 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N5X O3  C16 DOUB N N 1  
N5X O2  C17 DOUB N N 2  
N5X C19 C20 DOUB Y N 3  
N5X C19 C18 SING Y N 4  
N5X C20 C21 SING Y N 5  
N5X C16 O1  SING N N 6  
N5X C16 C13 SING N N 7  
N5X C17 C18 SING N N 8  
N5X C17 N2  SING N N 9  
N5X C18 C23 DOUB Y N 10 
N5X CL1 C21 SING N N 11 
N5X C21 C22 DOUB Y N 12 
N5X C12 C13 DOUB Y N 13 
N5X C12 C11 SING Y N 14 
N5X C13 C14 SING Y N 15 
N5X N2  C11 SING N N 16 
N5X C11 C10 DOUB Y N 17 
N5X C14 C15 DOUB Y N 18 
N5X C23 C22 SING Y N 19 
N5X C10 C15 SING Y N 20 
N5X C10 N1  SING N N 21 
N5X C8  N1  SING N N 22 
N5X C8  C9  SING N N 23 
N5X N1  C7  SING N N 24 
N5X C25 C1  SING N N 25 
N5X C9  N3  SING N N 26 
N5X C   C1  DOUB Y N 27 
N5X C   C5  SING Y N 28 
N5X C1  C2  SING Y N 29 
N5X N3  C5  SING N N 30 
N5X N3  C6  SING N N 31 
N5X C5  C4  DOUB Y N 32 
N5X C2  C3  DOUB Y N 33 
N5X C6  C7  SING N N 34 
N5X C3  C4  SING Y N 35 
N5X C4  C24 SING N N 36 
N5X C20 H1  SING N N 37 
N5X C19 H2  SING N N 38 
N5X C22 H3  SING N N 39 
N5X C23 H4  SING N N 40 
N5X N2  H5  SING N N 41 
N5X C12 H6  SING N N 42 
N5X O1  H7  SING N N 43 
N5X C14 H8  SING N N 44 
N5X C15 H9  SING N N 45 
N5X C7  H10 SING N N 46 
N5X C7  H11 SING N N 47 
N5X C6  H12 SING N N 48 
N5X C6  H13 SING N N 49 
N5X C8  H14 SING N N 50 
N5X C8  H15 SING N N 51 
N5X C9  H16 SING N N 52 
N5X C9  H17 SING N N 53 
N5X C   H18 SING N N 54 
N5X C24 H19 SING N N 55 
N5X C24 H20 SING N N 56 
N5X C24 H21 SING N N 57 
N5X C3  H22 SING N N 58 
N5X C2  H23 SING N N 59 
N5X C25 H24 SING N N 60 
N5X C25 H25 SING N N 61 
N5X C25 H26 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N5X InChI            InChI                1.06  "InChI=1S/C26H26ClN3O3/c1-17-3-4-18(2)24(15-17)30-13-11-29(12-14-30)23-10-7-20(26(32)33)16-22(23)28-25(31)19-5-8-21(27)9-6-19/h3-10,15-16H,11-14H2,1-2H3,(H,28,31)(H,32,33)" 
N5X InChIKey         InChI                1.06  BQXRGKXBCYCKLD-UHFFFAOYSA-N                                                                                                                                                  
N5X SMILES_CANONICAL CACTVS               3.385 "Cc1ccc(C)c(c1)N2CCN(CC2)c3ccc(cc3NC(=O)c4ccc(Cl)cc4)C(O)=O"                                                                                                                 
N5X SMILES           CACTVS               3.385 "Cc1ccc(C)c(c1)N2CCN(CC2)c3ccc(cc3NC(=O)c4ccc(Cl)cc4)C(O)=O"                                                                                                                 
N5X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)N2CCN(CC2)c3ccc(cc3NC(=O)c4ccc(cc4)Cl)C(=O)O)C"                                                                                                                 
N5X SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)N2CCN(CC2)c3ccc(cc3NC(=O)c4ccc(cc4)Cl)C(=O)O)C"                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           N5X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[(4-chlorophenyl)carbonylamino]-4-[4-(2,5-dimethylphenyl)piperazin-1-yl]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N5X "Create component" 2023-01-11 PDBJ 
N5X "Initial release"  2023-12-27 RCSB 
# 
