data_M1X
# 
_chem_comp.id                                    M1X 
_chem_comp.name                                  "{(2S)-4-[7-(8-chloronaphthalen-1-yl)-2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]-1-[(2S)-2-fluoropropanoyl]piperazin-2-yl}acetonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H37 Cl F N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-11-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        606.133 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     M1X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6UT0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M1X N5  N1  N  0 1 Y N N N N N 35.496 11.307 30.601 -1.175 1.311  -0.073 N5  M1X 1  
M1X C13 C1  C  0 1 N N N N N N 37.987 8.249  31.729 -3.748 -1.814 1.631  C13 M1X 2  
M1X C12 C2  C  0 1 N N N N N N 37.181 9.498  31.402 -2.773 -0.643 1.474  C12 M1X 3  
M1X C17 C3  C  0 1 N N N N N N 37.109 5.957  32.328 -5.779 -2.104 0.286  C17 M1X 4  
M1X C16 C4  C  0 1 N N N N N N 36.252 8.125  29.476 -2.638 -0.974 -0.925 C16 M1X 5  
M1X C15 C5  C  0 1 N N S N N N 36.030 7.141  30.578 -3.615 -2.163 -0.866 C15 M1X 6  
M1X N3  N2  N  0 1 Y N N N N N 34.200 12.623 29.146 1.043  1.930  0.107  N3  M1X 7  
M1X C10 C6  C  0 1 N N N N N N 34.027 12.149 26.736 2.856  0.412  0.726  C10 M1X 8  
M1X C8  C7  C  0 1 N N N N N N 35.821 10.598 25.922 2.171  -1.752 1.541  C8  M1X 9  
M1X C22 C8  C  0 1 Y N N N N N 34.471 12.725 22.424 6.211  -1.302 2.645  C22 M1X 10 
M1X C7  C9  C  0 1 N N N N N N 35.854 9.760  27.192 0.783  -1.700 0.900  C7  M1X 11 
M1X C6  C10 C  0 1 Y N N N N N 35.871 10.494 29.613 -0.885 0.057  0.257  C6  M1X 12 
M1X C1  C11 C  0 1 Y N N N N N 35.411 10.693 28.312 0.445  -0.283 0.528  C1  M1X 13 
M1X C4  C12 C  0 1 Y N N N N N 34.698 12.346 30.364 -0.221 2.224  -0.146 C4  M1X 14 
M1X C19 C13 C  0 1 N N S N N N 38.344 5.516  33.123 -6.604 -1.870 1.526  C19 M1X 15 
M1X C20 C14 C  0 1 Y N N N N N 33.972 11.527 24.485 4.433  -1.315 1.021  C20 M1X 16 
M1X C21 C15 C  0 1 Y N N N N N 34.869 12.266 23.693 4.896  -1.022 2.287  C21 M1X 17 
M1X C2  C16 C  0 1 Y N N N N N 34.562 11.820 28.123 1.406  0.697  0.445  C2  M1X 18 
M1X N9  N3  N  0 1 N N N N N N 34.430 11.100 25.782 3.115  -1.031 0.672  N9  M1X 19 
M1X N11 N4  N  0 1 N N N N N N 36.745 9.404  29.989 -1.884 -0.900 0.333  N11 M1X 20 
M1X N14 N5  N  0 1 N N N N N N 37.118 7.069  31.563 -4.435 -2.031 0.348  N14 M1X 21 
M1X O18 O1  O  0 1 N N N N N N 36.170 5.177  32.191 -6.325 -2.357 -0.766 O18 M1X 22 
M1X C23 C17 C  0 1 Y N N N N N 33.164 12.456 21.978 7.077  -1.867 1.759  C23 M1X 23 
M1X C24 C18 C  0 1 Y N N N N N 32.262 11.723 22.782 6.646  -2.176 0.457  C24 M1X 24 
M1X C25 C19 C  0 1 Y N N N N N 32.651 11.247 24.050 5.310  -1.896 0.080  C25 M1X 25 
M1X C26 C20 C  0 1 Y N N N N N 30.972 11.475 22.286 7.517  -2.760 -0.479 C26 M1X 26 
M1X C27 C21 C  0 1 Y N N N N N 30.029 10.769 23.030 7.068  -3.047 -1.731 C27 M1X 27 
M1X C28 C22 C  0 1 Y N N N N N 30.390 10.291 24.293 5.754  -2.770 -2.102 C28 M1X 28 
M1X C29 C23 C  0 1 Y N N N N N 31.681 10.520 24.794 4.881  -2.206 -1.220 C29 M1X 29 
M1X O30 O2  O  0 1 N N N N N N 34.414 13.173 31.418 -0.548 3.494  -0.486 O30 M1X 30 
M1X C31 C24 C  0 1 N N N N N N 34.842 12.877 32.722 0.518  4.443  -0.550 C31 M1X 31 
M1X C32 C25 C  0 1 N N S N N N 34.408 14.024 33.682 -0.040 5.811  -0.947 C32 M1X 32 
M1X N33 N6  N  0 1 N N N N N N 34.935 15.316 33.095 -0.906 6.330  0.127  N33 M1X 33 
M1X C34 C26 C  0 1 N N N N N N 33.805 16.102 32.434 -0.326 7.594  0.630  C34 M1X 34 
M1X C35 C27 C  0 1 N N N N N N 32.556 15.678 33.205 0.533  8.130  -0.542 C35 M1X 35 
M1X C36 C28 C  0 1 N N N N N N 32.879 14.256 33.667 1.117  6.816  -1.133 C36 M1X 36 
M1X C37 C29 C  0 1 N N N N N N 35.524 16.144 34.228 -2.278 6.537  -0.357 C37 M1X 37 
M1X C38 C30 C  0 1 N N N N N N 34.737 7.565  31.261 -4.515 -2.151 -2.103 C38 M1X 38 
M1X C39 C31 C  0 1 N N N N N N 38.082 5.626  34.637 -7.714 -2.921 1.605  C39 M1X 39 
M1X C40 C32 C  0 1 N N N N N N 33.673 7.359  30.245 -5.157 -3.467 -2.257 C40 M1X 40 
M1X N41 N7  N  0 1 N N N N N N 32.788 7.134  29.532 -5.652 -4.483 -2.375 N41 M1X 41 
M1X CL1 CL1 CL 0 0 N N N N N N 31.964 9.817  26.371 3.247  -1.871 -1.704 CL1 M1X 42 
M1X F42 F1  F  0 1 N N N N N N 39.444 6.219  32.755 -7.173 -0.594 1.474  F42 M1X 43 
M1X H1  H1  H  0 1 N N N N N N 38.847 8.174  31.047 -3.199 -2.714 1.908  H1  M1X 44 
M1X H2  H2  H  0 1 N N N N N N 38.346 8.301  32.767 -4.481 -1.580 2.403  H2  M1X 45 
M1X H3  H3  H  0 1 N N N N N N 37.806 10.393 31.541 -3.333 0.275  1.298  H3  M1X 46 
M1X H4  H4  H  0 1 N N N N N N 36.302 9.558  32.061 -2.180 -0.539 2.382  H4  M1X 47 
M1X H5  H5  H  0 1 N N N N N N 35.300 8.294  28.951 -1.947 -1.110 -1.756 H5  M1X 48 
M1X H6  H6  H  0 1 N N N N N N 36.991 7.713  28.773 -3.200 -0.051 -1.067 H6  M1X 49 
M1X H7  H7  H  0 1 N N N N N N 35.878 6.145  30.137 -3.054 -3.097 -0.831 H7  M1X 50 
M1X H8  H8  H  0 1 N N N N N N 34.434 13.117 26.408 3.473  0.917  -0.018 H8  M1X 51 
M1X H9  H9  H  0 1 N N N N N N 32.929 12.207 26.773 3.111  0.785  1.718  H9  M1X 52 
M1X H10 H10 H  0 1 N N N N N N 36.091 9.981  25.053 2.140  -1.278 2.522  H10 M1X 53 
M1X H11 H11 H  0 1 N N N N N N 36.522 11.441 26.005 2.487  -2.790 1.646  H11 M1X 54 
M1X H12 H12 H  0 1 N N N N N N 35.159 13.276 21.801 6.552  -1.064 3.642  H12 M1X 55 
M1X H13 H13 H  0 1 N N N N N N 35.164 8.908  27.107 0.774  -2.322 0.005  H13 M1X 56 
M1X H14 H14 H  0 1 N N N N N N 36.872 9.390  27.381 0.043  -2.075 1.608  H14 M1X 57 
M1X H15 H15 H  0 1 N N N N N N 38.504 4.450  32.903 -5.966 -1.948 2.407  H15 M1X 58 
M1X H16 H16 H  0 1 N N N N N N 35.862 12.481 24.059 4.230  -0.571 3.007  H16 M1X 59 
M1X H17 H17 H  0 1 N N N N N N 32.846 12.814 21.010 8.094  -2.076 2.056  H17 M1X 60 
M1X H18 H18 H  0 1 N N N N N N 30.705 11.840 21.305 8.539  -2.979 -0.206 H18 M1X 61 
M1X H19 H19 H  0 1 N N N N N N 29.038 10.594 22.638 7.740  -3.495 -2.448 H19 M1X 62 
M1X H20 H20 H  0 1 N N N N N N 29.673 9.743  24.886 5.422  -3.008 -3.102 H20 M1X 63 
M1X H21 H21 H  0 1 N N N N N N 34.388 11.931 33.052 0.998  4.516  0.426  H21 M1X 64 
M1X H22 H22 H  0 1 N N N N N N 35.938 12.782 32.736 1.249  4.120  -1.291 H22 M1X 65 
M1X H23 H23 H  0 1 N N N N N N 34.780 13.854 34.703 -0.608 5.725  -1.873 H23 M1X 66 
M1X H25 H25 H  0 1 N N N N N N 33.974 17.185 32.530 -1.117 8.303  0.876  H25 M1X 67 
M1X H26 H26 H  0 1 N N N N N N 33.716 15.838 31.370 0.299  7.403  1.502  H26 M1X 68 
M1X H27 H27 H  0 1 N N N N N N 32.383 16.340 34.066 -0.087 8.644  -1.277 H27 M1X 69 
M1X H28 H28 H  0 1 N N N N N N 31.671 15.687 32.552 1.326  8.782  -0.179 H28 M1X 70 
M1X H29 H29 H  0 1 N N N N N N 32.480 14.106 34.681 1.995  6.498  -0.571 H29 M1X 71 
M1X H30 H30 H  0 1 N N N N N N 32.411 13.537 32.979 1.357  6.942  -2.188 H30 M1X 72 
M1X H31 H31 H  0 1 N N N N N N 36.339 15.582 34.708 -2.686 5.589  -0.708 H31 M1X 73 
M1X H32 H32 H  0 1 N N N N N N 35.918 17.089 33.825 -2.896 6.920  0.455  H32 M1X 74 
M1X H33 H33 H  0 1 N N N N N N 34.741 16.360 34.970 -2.270 7.254  -1.178 H33 M1X 75 
M1X H34 H34 H  0 1 N N N N N N 34.787 8.623  31.558 -5.282 -1.385 -1.987 H34 M1X 76 
M1X H35 H35 H  0 1 N N N N N N 34.548 6.943  32.149 -3.915 -1.934 -2.987 H35 M1X 77 
M1X H36 H36 H  0 1 N N N N N N 38.978 5.306  35.189 -7.270 -3.916 1.646  H36 M1X 78 
M1X H37 H37 H  0 1 N N N N N N 37.847 6.670  34.893 -8.310 -2.752 2.502  H37 M1X 79 
M1X H38 H38 H  0 1 N N N N N N 37.234 4.981  34.910 -8.351 -2.843 0.725  H38 M1X 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M1X C23 C22 DOUB Y N 1  
M1X C23 C24 SING Y N 2  
M1X C26 C24 DOUB Y N 3  
M1X C26 C27 SING Y N 4  
M1X C22 C21 SING Y N 5  
M1X C24 C25 SING Y N 6  
M1X C27 C28 DOUB Y N 7  
M1X C21 C20 DOUB Y N 8  
M1X C25 C20 SING Y N 9  
M1X C25 C29 DOUB Y N 10 
M1X C28 C29 SING Y N 11 
M1X C20 N9  SING N N 12 
M1X C29 CL1 SING N N 13 
M1X N9  C8  SING N N 14 
M1X N9  C10 SING N N 15 
M1X C8  C7  SING N N 16 
M1X C10 C2  SING N N 17 
M1X C7  C1  SING N N 18 
M1X C2  C1  DOUB Y N 19 
M1X C2  N3  SING Y N 20 
M1X C1  C6  SING Y N 21 
M1X N3  C4  DOUB Y N 22 
M1X C16 N11 SING N N 23 
M1X C16 C15 SING N N 24 
M1X N41 C40 TRIP N N 25 
M1X C6  N11 SING N N 26 
M1X C6  N5  DOUB Y N 27 
M1X N11 C12 SING N N 28 
M1X C40 C38 SING N N 29 
M1X C4  N5  SING Y N 30 
M1X C4  O30 SING N N 31 
M1X C15 C38 SING N N 32 
M1X C15 N14 SING N N 33 
M1X C12 C13 SING N N 34 
M1X O30 C31 SING N N 35 
M1X N14 C13 SING N N 36 
M1X N14 C17 SING N N 37 
M1X O18 C17 DOUB N N 38 
M1X C17 C19 SING N N 39 
M1X C34 N33 SING N N 40 
M1X C34 C35 SING N N 41 
M1X C31 C32 SING N N 42 
M1X F42 C19 SING N N 43 
M1X N33 C32 SING N N 44 
M1X N33 C37 SING N N 45 
M1X C19 C39 SING N N 46 
M1X C35 C36 SING N N 47 
M1X C36 C32 SING N N 48 
M1X C13 H1  SING N N 49 
M1X C13 H2  SING N N 50 
M1X C12 H3  SING N N 51 
M1X C12 H4  SING N N 52 
M1X C16 H5  SING N N 53 
M1X C16 H6  SING N N 54 
M1X C15 H7  SING N N 55 
M1X C10 H8  SING N N 56 
M1X C10 H9  SING N N 57 
M1X C8  H10 SING N N 58 
M1X C8  H11 SING N N 59 
M1X C22 H12 SING N N 60 
M1X C7  H13 SING N N 61 
M1X C7  H14 SING N N 62 
M1X C19 H15 SING N N 63 
M1X C21 H16 SING N N 64 
M1X C23 H17 SING N N 65 
M1X C26 H18 SING N N 66 
M1X C27 H19 SING N N 67 
M1X C28 H20 SING N N 68 
M1X C31 H21 SING N N 69 
M1X C31 H22 SING N N 70 
M1X C32 H23 SING N N 71 
M1X C34 H25 SING N N 72 
M1X C34 H26 SING N N 73 
M1X C35 H27 SING N N 74 
M1X C35 H28 SING N N 75 
M1X C36 H29 SING N N 76 
M1X C36 H30 SING N N 77 
M1X C37 H31 SING N N 78 
M1X C37 H32 SING N N 79 
M1X C37 H33 SING N N 80 
M1X C38 H34 SING N N 81 
M1X C38 H35 SING N N 82 
M1X C39 H36 SING N N 83 
M1X C39 H37 SING N N 84 
M1X C39 H38 SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M1X SMILES           ACDLabs              12.01 "n2c(N1CCN(C(C(C)F)=O)C(C1)CC#N)c4CCN(Cc4nc2OCC3N(C)CCC3)c5cccc6c5c(ccc6)Cl"                                                                                                                                                           
M1X InChI            InChI                1.03  "InChI=1S/C32H37ClFN7O2/c1-21(34)31(42)41-17-16-40(18-23(41)11-13-35)30-25-12-15-39(28-10-4-7-22-6-3-9-26(33)29(22)28)19-27(25)36-32(37-30)43-20-24-8-5-14-38(24)2/h3-4,6-7,9-10,21,23-24H,5,8,11-12,14-20H2,1-2H3/t21-,23-,24-/m0/s1" 
M1X InChIKey         InChI                1.03  BQFJNAAUAQEWHZ-XWGVYQGASA-N                                                                                                                                                                                                            
M1X SMILES_CANONICAL CACTVS               3.385 "C[C@H](F)C(=O)N1CCN(C[C@@H]1CC#N)c2nc(OC[C@@H]3CCCN3C)nc4CN(CCc24)c5cccc6cccc(Cl)c56"                                                                                                                                                 
M1X SMILES           CACTVS               3.385 "C[CH](F)C(=O)N1CCN(C[CH]1CC#N)c2nc(OC[CH]3CCCN3C)nc4CN(CCc24)c5cccc6cccc(Cl)c56"                                                                                                                                                      
M1X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)N1CCN(C[C@@H]1CC#N)c2c3c(nc(n2)OC[C@@H]4CCCN4C)CN(CC3)c5cccc6c5c(ccc6)Cl)F"                                                                                                                                              
M1X SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(=O)N1CCN(CC1CC#N)c2c3c(nc(n2)OCC4CCCN4C)CN(CC3)c5cccc6c5c(ccc6)Cl)F"                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
M1X "SYSTEMATIC NAME" ACDLabs              12.01 "{(2S)-4-[7-(8-chloronaphthalen-1-yl)-2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]-1-[(2S)-2-fluoropropanoyl]piperazin-2-yl}acetonitrile"                   
M1X "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(2~{S})-4-[7-(8-chloranylnaphthalen-1-yl)-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidin-4-yl]-1-[(2~{S})-2-fluoranylpropanoyl]piperazin-2-yl]ethanenitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M1X "Create component" 2019-11-01 RCSB 
M1X "Initial release"  2020-04-22 RCSB 
M1X "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            M1X 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C39 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
