data_LJX
# 
_chem_comp.id                                    LJX 
_chem_comp.name                                  "(2R,3R,4R)-2-[(8P)-6-amino-2-(hex-1-yn-1-yl)-8-(thiophen-2-yl)-9H-purin-9-yl]oxolane-3,4-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H21 N5 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-17 
_chem_comp.pdbx_modified_date                    2022-08-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        399.467 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LJX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CU6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LJX C1    C1  C 0 1 Y N N -18.775 1.232  19.722 6.027  0.291  -0.112 C1    LJX 1  
LJX C11   C2  C 0 1 N N N -22.484 9.397  15.894 -3.469 -1.260 0.390  C11   LJX 2  
LJX C12   C3  C 0 1 N N N -23.255 10.103 15.312 -4.597 -0.969 0.536  C12   LJX 3  
LJX C13   C4  C 0 1 N N N -24.186 10.961 14.573 -6.011 -0.605 0.719  C13   LJX 4  
LJX C14   C5  C 0 1 N N N -23.428 11.746 13.501 -6.399 0.465  -0.304 C14   LJX 5  
LJX C15   C6  C 0 1 N N N -22.572 10.811 12.644 -7.869 0.843  -0.114 C15   LJX 6  
LJX C16   C7  C 0 1 N N N -21.132 10.737 13.153 -8.257 1.913  -1.137 C16   LJX 7  
LJX C2    C8  C 0 1 Y N N -21.573 8.543  16.578 -2.092 -1.614 0.213  C2    LJX 8  
LJX C3    C9  C 0 1 Y N N -20.046 1.326  20.144 6.026  -1.043 -0.013 C3    LJX 9  
LJX C4    C10 C 0 1 Y N N -21.154 6.395  17.473 0.118  -0.964 0.189  C4    LJX 10 
LJX C5    C11 C 0 1 Y N N -19.927 6.811  17.876 0.490  -2.285 -0.123 C5    LJX 11 
LJX C6    C12 C 0 1 Y N N -19.514 8.123  17.620 -0.526 -3.250 -0.261 C6    LJX 12 
LJX C7    C13 C 0 1 Y N N -20.691 2.541  19.767 4.780  -1.627 0.031  C7    LJX 13 
LJX C8    C14 C 0 1 Y N N -20.169 4.707  18.472 2.318  -1.109 -0.006 C8    LJX 14 
LJX C9    C15 C 0 1 Y N N -19.872 3.375  19.039 3.743  -0.747 -0.034 C9    LJX 15 
LJX N1    N1  N 0 1 Y N N -20.348 8.978  16.971 -1.786 -2.874 -0.086 N1    LJX 16 
LJX N3    N2  N 0 1 Y N N -21.963 7.272  16.826 -1.167 -0.674 0.346  N3    LJX 17 
LJX S1    S1  S 0 1 Y N N -18.345 2.627  18.854 4.374  0.890  -0.148 S1    LJX 18 
LJX "C2'" C16 C 0 1 N N R -23.735 4.985  17.111 0.990  2.030  -0.671 "C2'" LJX 19 
LJX "C4'" C17 C 0 1 N N N -22.968 3.554  15.435 0.319  2.994  1.463  "C4'" LJX 20 
LJX "C3'" C18 C 0 1 N N R -23.488 4.969  15.612 0.258  3.246  -0.060 "C3'" LJX 21 
LJX "C1'" C19 C 0 1 N N R -22.494 4.232  17.606 1.407  1.188  0.555  "C1'" LJX 22 
LJX N9    N3  N 0 1 Y N N -21.315 5.091  17.839 1.286  -0.242 0.257  N9    LJX 23 
LJX N7    N4  N 0 1 Y N N -19.317 5.750  18.500 1.837  -2.312 -0.229 N7    LJX 24 
LJX N6    N5  N 0 1 N N N -18.306 8.537  18.016 -0.217 -4.564 -0.567 N6    LJX 25 
LJX "O2'" O1  O 0 1 N N N -24.910 4.227  17.357 2.142  2.454  -1.401 "O2'" LJX 26 
LJX "O4'" O2  O 0 1 N N N -22.175 3.270  16.594 0.478  1.565  1.595  "O4'" LJX 27 
LJX "O3'" O3  O 0 1 N N N -24.685 5.228  14.897 0.936  4.458  -0.395 "O3'" LJX 28 
LJX H1    H1  H 0 1 N N N -18.122 0.392  19.907 6.911  0.909  -0.158 H1    LJX 29 
LJX H2    H2  H 0 1 N N N -24.666 11.664 15.270 -6.635 -1.488 0.575  H2    LJX 30 
LJX H3    H3  H 0 1 N N N -24.955 10.337 14.094 -6.159 -0.216 1.726  H3    LJX 31 
LJX H4    H4  H 0 1 N N N -22.776 12.485 13.989 -5.775 1.347  -0.161 H4    LJX 32 
LJX H5    H5  H 0 1 N N N -24.152 12.265 12.855 -6.251 0.075  -1.311 H5    LJX 33 
LJX H6    H6  H 0 1 N N N -22.565 11.183 11.609 -8.493 -0.039 -0.258 H6    LJX 34 
LJX H7    H7  H 0 1 N N N -23.011 9.803  12.669 -8.017 1.232  0.893  H7    LJX 35 
LJX H8    H8  H 0 1 N N N -20.551 10.057 12.513 -7.633 2.795  -0.993 H8    LJX 36 
LJX H9    H9  H 0 1 N N N -20.682 11.740 13.126 -8.109 1.524  -2.144 H9    LJX 37 
LJX H10   H10 H 0 1 N N N -21.127 10.360 14.187 -9.304 2.183  -1.002 H10   LJX 38 
LJX H11   H11 H 0 1 N N N -20.535 0.552  20.717 6.938  -1.621 0.029  H11   LJX 39 
LJX H12   H12 H 0 1 N N N -21.712 2.781  20.025 4.638  -2.695 0.110  H12   LJX 40 
LJX H13   H13 H 0 1 N N N -23.778 6.009  17.511 0.319  1.461  -1.315 H13   LJX 41 
LJX H14   H14 H 0 1 N N N -23.807 2.846  15.364 1.173  3.513  1.899  H14   LJX 42 
LJX H15   H15 H 0 1 N N N -22.352 3.485  14.526 -0.607 3.319  1.938  H15   LJX 43 
LJX H16   H16 H 0 1 N N N -22.701 5.693  15.354 -0.777 3.279  -0.401 H16   LJX 44 
LJX H17   H17 H 0 1 N N N -22.753 3.715  18.542 2.428  1.428  0.851  H17   LJX 45 
LJX H18   H18 H 0 1 N N N -18.180 9.494  17.756 0.708  -4.829 -0.688 H18   LJX 46 
LJX H19   H19 H 0 1 N N N -18.233 8.449  19.009 -0.925 -5.220 -0.659 H19   LJX 47 
LJX H20   H20 H 0 1 N N N -25.092 4.218  18.289 1.939  2.987  -2.182 H20   LJX 48 
LJX H21   H21 H 0 1 N N N -24.957 6.126  15.049 0.554  5.248  0.012  H21   LJX 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LJX C15   C16   SING N N 1  
LJX C15   C14   SING N N 2  
LJX C14   C13   SING N N 3  
LJX C13   C12   SING N N 4  
LJX "O3'" "C3'" SING N N 5  
LJX C12   C11   TRIP N N 6  
LJX "C4'" "C3'" SING N N 7  
LJX "C4'" "O4'" SING N N 8  
LJX "C3'" "C2'" SING N N 9  
LJX C11   C2    SING N N 10 
LJX C2    N3    DOUB Y N 11 
LJX C2    N1    SING Y N 12 
LJX "O4'" "C1'" SING N N 13 
LJX N3    C4    SING Y N 14 
LJX N1    C6    DOUB Y N 15 
LJX "C2'" "O2'" SING N N 16 
LJX "C2'" "C1'" SING N N 17 
LJX C4    N9    SING Y N 18 
LJX C4    C5    DOUB Y N 19 
LJX "C1'" N9    SING N N 20 
LJX C6    C5    SING Y N 21 
LJX C6    N6    SING N N 22 
LJX N9    C8    SING Y N 23 
LJX C5    N7    SING Y N 24 
LJX C8    N7    DOUB Y N 25 
LJX C8    C9    SING N N 26 
LJX S1    C9    SING Y N 27 
LJX S1    C1    SING Y N 28 
LJX C9    C7    DOUB Y N 29 
LJX C1    C3    DOUB Y N 30 
LJX C7    C3    SING Y N 31 
LJX C1    H1    SING N N 32 
LJX C13   H2    SING N N 33 
LJX C13   H3    SING N N 34 
LJX C14   H4    SING N N 35 
LJX C14   H5    SING N N 36 
LJX C15   H6    SING N N 37 
LJX C15   H7    SING N N 38 
LJX C16   H8    SING N N 39 
LJX C16   H9    SING N N 40 
LJX C16   H10   SING N N 41 
LJX C3    H11   SING N N 42 
LJX C7    H12   SING N N 43 
LJX "C2'" H13   SING N N 44 
LJX "C4'" H14   SING N N 45 
LJX "C4'" H15   SING N N 46 
LJX "C3'" H16   SING N N 47 
LJX "C1'" H17   SING N N 48 
LJX N6    H18   SING N N 49 
LJX N6    H19   SING N N 50 
LJX "O2'" H20   SING N N 51 
LJX "O3'" H21   SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LJX SMILES           ACDLabs              12.01 "OC1C(O)COC1n1c2nc(C#CCCCC)nc(N)c2nc1c1cccs1"                                                                                                                                       
LJX InChI            InChI                1.03  "InChI=1S/C19H21N5O3S/c1-2-3-4-5-8-13-21-16(20)14-18(22-13)24(19-15(26)11(25)10-27-19)17(23-14)12-7-6-9-28-12/h6-7,9,11,15,19,25-26H,2-4,10H2,1H3,(H2,20,21,22)/t11-,15-,19-/m1/s1" 
LJX InChIKey         InChI                1.03  MUHXGASCCALSAJ-PRIMNGNOSA-N                                                                                                                                                         
LJX SMILES_CANONICAL CACTVS               3.385 "CCCCC#Cc1nc(N)c2nc(n([C@@H]3OC[C@@H](O)[C@H]3O)c2n1)c4sccc4"                                                                                                                       
LJX SMILES           CACTVS               3.385 "CCCCC#Cc1nc(N)c2nc(n([CH]3OC[CH](O)[CH]3O)c2n1)c4sccc4"                                                                                                                            
LJX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC#Cc1nc(c2c(n1)n(c(n2)c3cccs3)[C@H]4[C@@H]([C@@H](CO4)O)O)N"                                                                                                                   
LJX SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCC#Cc1nc(c2c(n1)n(c(n2)c3cccs3)C4C(C(CO4)O)O)N"                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LJX "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R)-2-[(8P)-6-amino-2-(hex-1-yn-1-yl)-8-(thiophen-2-yl)-9H-purin-9-yl]oxolane-3,4-diol" 
LJX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R})-2-(6-azanyl-2-hex-1-ynyl-8-thiophen-2-yl-purin-9-yl)oxolane-3,4-diol"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LJX "Create component"   2022-05-17 RCSB 
LJX "Other modification" 2022-05-24 RCSB 
LJX "Initial release"    2022-08-31 RCSB 
# 
