data_KNX
# 
_chem_comp.id                                    KNX 
_chem_comp.name                                  "5'-([(3S)-3-amino-3-carboxypropyl]{4-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]butyl}amino)-5'-deoxyadenosine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H36 Cl2 N8 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-08 
_chem_comp.pdbx_modified_date                    2023-02-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        623.531 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KNX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7TX2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KNX N1  N1  N  0 1 Y N N 30.818 -45.077 -35.369 -7.682  -1.488 1.806  N1  KNX 1  
KNX N3  N2  N  0 1 Y N N 32.634 -42.573 -37.153 -6.814  1.645  0.595  N3  KNX 2  
KNX C4  C1  C  0 1 Y N N 31.422 -44.605 -38.112 -8.771  0.984  2.085  C4  KNX 3  
KNX C5  C2  C  0 1 Y N N 32.744 -42.191 -35.905 -5.848  0.960  0.055  C5  KNX 4  
KNX C6  C3  C  0 1 N N R 32.035 -42.892 -33.614 -5.071  -1.440 -0.021 C6  KNX 5  
KNX C7  C4  C  0 1 N N R 31.092 -41.685 -31.938 -3.117  -1.915 -1.127 C7  KNX 6  
KNX C8  C5  C  0 1 N N S 32.604 -41.514 -31.756 -4.222  -2.359 -2.110 C8  KNX 7  
KNX C10 C6  C  0 1 N N N 30.246 -40.467 -31.630 -1.943  -1.296 -1.889 C10 KNX 8  
KNX C13 C7  C  0 1 N N S 28.873 -41.676 -27.231 -1.670  2.594  -0.106 C13 KNX 9  
KNX C15 C8  C  0 1 N N N 29.760 -38.777 -29.943 0.417   -0.800 -1.670 C15 KNX 10 
KNX C17 C9  C  0 1 N N N 28.993 -36.494 -30.630 2.892   -0.581 -1.413 C17 KNX 11 
KNX C20 C10 C  0 1 Y N N 26.968 -34.917 -27.702 6.527   -0.579 -0.217 C20 KNX 12 
KNX C21 C11 C  0 1 Y N N 25.935 -33.986 -27.586 7.579   0.308  -0.151 C21 KNX 13 
KNX C22 C12 C  0 1 N N N 25.682 -32.990 -28.688 7.624   1.553  -0.998 C22 KNX 14 
KNX C24 C13 C  0 1 Y N N 27.197 -35.802 -26.648 6.523   -1.707 0.590  C24 KNX 15 
KNX C26 C14 C  0 1 Y N N 25.400 -34.838 -25.396 8.628   -1.062 1.522  C26 KNX 16 
KNX C1  C15 C  0 1 Y N N 31.885 -43.739 -37.104 -7.610  0.815  1.310  C1  KNX 17 
KNX C11 C16 C  0 1 N N N 30.313 -41.006 -29.265 -1.169  0.146  -0.104 C11 KNX 18 
KNX C12 C17 C  0 1 N N N 29.003 -40.849 -28.516 -1.468  1.360  -0.987 C12 KNX 19 
KNX C14 C18 C  0 1 N N N 28.069 -40.849 -26.235 -1.957  3.791  -0.975 C14 KNX 20 
KNX C16 C19 C  0 1 N N N 29.315 -37.906 -31.102 1.584   -0.899 -0.686 C16 KNX 21 
KNX C18 C20 C  0 1 N N N 28.034 -36.397 -29.470 4.059   -0.680 -0.429 C18 KNX 22 
KNX C19 C21 C  0 1 N N R 27.826 -34.959 -28.955 5.368   -0.362 -1.156 C19 KNX 23 
KNX C2  C22 C  0 1 Y N N 31.545 -44.033 -35.799 -7.076  -0.478 1.189  C2  KNX 24 
KNX C23 C23 C  0 1 N N N 27.278 -34.071 -30.064 5.345   1.091  -1.630 C23 KNX 25 
KNX C25 C24 C  0 1 Y N N 26.419 -35.767 -25.500 7.569   -1.949 1.457  C25 KNX 26 
KNX C27 C25 C  0 1 Y N N 25.165 -33.954 -26.423 8.633   0.064  0.720  C27 KNX 27 
KNX C3  C26 C  0 1 Y N N 30.445 -45.832 -36.401 -8.767  -1.283 2.522  C3  KNX 28 
KNX C9  C27 C  0 1 N N R 33.185 -42.055 -33.068 -5.538  -2.039 -1.366 C9  KNX 29 
KNX N2  N3  N  0 1 Y N N 30.685 -45.671 -37.713 -9.306  -0.085 2.665  N2  KNX 30 
KNX N4  N4  N  0 1 Y N N 32.100 -43.038 -35.041 -5.966  -0.356 0.392  N4  KNX 31 
KNX N5  N5  N  0 1 N N N 30.543 -39.969 -30.286 -0.848  -1.009 -0.953 N5  KNX 32 
KNX N6  N6  N  0 1 N N N 26.854 -32.775 -29.525 6.687   1.444  -2.120 N6  KNX 33 
KNX N7  N7  N  0 1 N N N 31.677 -44.431 -39.412 -9.343  2.234  2.241  N7  KNX 34 
KNX N8  N8  N  0 1 N N N 28.117 -42.932 -27.487 -2.801  2.366  0.803  N8  KNX 35 
KNX O1  O1  O  0 1 N N N 30.902 -42.125 -33.300 -3.747  -0.926 -0.285 O1  KNX 36 
KNX O2  O2  O  0 1 N N N 33.028 -42.292 -30.643 -4.124  -3.760 -2.374 O2  KNX 37 
KNX O3  O3  O  0 1 N N N 34.383 -42.782 -32.921 -6.292  -3.233 -1.147 O3  KNX 38 
KNX O4  O4  O  0 1 N N N 28.664 -39.915 -25.648 -0.950  4.433  -1.587 O4  KNX 39 
KNX O5  O5  O  0 1 N N N 26.870 -41.156 -26.102 -3.094  4.171  -1.123 O5  KNX 40 
KNX CL1 CL1 CL 0 0 N N N 23.884 -32.803 -26.273 9.962   1.177  0.801  CL1 KNX 41 
KNX CL2 CL2 CL 0 0 N N N 24.400 -34.775 -23.974 9.948   -1.361 2.609  CL2 KNX 42 
KNX H1  H1  H  0 1 N N N 33.282 -41.308 -35.592 -5.069  1.372  -0.568 H1  KNX 43 
KNX H2  H2  H  0 1 N N N 32.014 -43.872 -33.114 -5.032  -2.213 0.746  H2  KNX 44 
KNX H3  H3  H  0 1 N N N 30.770 -42.492 -31.263 -2.776  -2.762 -0.531 H3  KNX 45 
KNX H4  H4  H  0 1 N N N 32.857 -40.450 -31.636 -4.158  -1.791 -3.038 H4  KNX 46 
KNX H5  H5  H  0 1 N N N 30.464 -39.679 -32.365 -1.597  -1.993 -2.651 H5  KNX 47 
KNX H6  H6  H  0 1 N N N 29.182 -40.740 -31.689 -2.267  -0.370 -2.364 H6  KNX 48 
KNX H7  H7  H  0 1 N N N 29.870 -41.898 -26.823 -0.767  2.777  0.477  H7  KNX 49 
KNX H8  H8  H  0 1 N N N 30.373 -38.156 -29.273 0.413   0.187  -2.132 H8  KNX 50 
KNX H9  H9  H  0 1 N N N 28.858 -39.111 -29.410 0.527   -1.562 -2.442 H9  KNX 51 
KNX H10 H10 H  0 1 N N N 29.936 -36.014 -30.330 3.039   -1.294 -2.224 H10 KNX 52 
KNX H11 H11 H  0 1 N N N 28.556 -35.946 -31.477 2.845   0.428  -1.821 H11 KNX 53 
KNX H12 H12 H  0 1 N N N 25.390 -32.030 -28.236 7.356   2.415  -0.387 H12 KNX 54 
KNX H13 H13 H  0 1 N N N 24.862 -33.363 -29.319 8.633   1.688  -1.387 H13 KNX 55 
KNX H14 H14 H  0 1 N N N 27.994 -36.527 -26.727 5.695   -2.400 0.539  H14 KNX 56 
KNX H15 H15 H  0 1 N N N 30.313 -41.987 -29.762 -0.322  0.368  0.544  H15 KNX 57 
KNX H16 H16 H  0 1 N N N 31.136 -40.964 -28.536 -2.043  -0.083 0.506  H16 KNX 58 
KNX H17 H17 H  0 1 N N N 28.891 -39.788 -28.249 -2.372  1.174  -1.566 H17 KNX 59 
KNX H18 H18 H  0 1 N N N 28.188 -41.145 -29.193 -0.631  1.530  -1.665 H18 KNX 60 
KNX H19 H19 H  0 1 N N N 28.417 -38.346 -31.559 1.436   -0.185 0.125  H19 KNX 61 
KNX H20 H20 H  0 1 N N N 30.122 -37.861 -31.849 1.631   -1.908 -0.278 H20 KNX 62 
KNX H21 H21 H  0 1 N N N 27.060 -36.795 -29.791 3.912   0.034  0.382  H21 KNX 63 
KNX H22 H22 H  0 1 N N N 28.426 -37.008 -28.644 4.106   -1.689 -0.020 H22 KNX 64 
KNX H23 H23 H  0 1 N N N 28.818 -34.568 -28.685 5.472   -1.021 -2.017 H23 KNX 65 
KNX H24 H24 H  0 1 N N N 26.415 -34.568 -30.532 4.620   1.201  -2.437 H24 KNX 66 
KNX H25 H25 H  0 1 N N N 28.062 -33.910 -30.819 5.075   1.743  -0.800 H25 KNX 67 
KNX H26 H26 H  0 1 N N N 26.608 -36.460 -24.694 7.560   -2.829 2.083  H26 KNX 68 
KNX H27 H27 H  0 1 N N N 29.862 -46.704 -36.145 -9.234  -2.125 3.011  H27 KNX 69 
KNX H28 H28 H  0 1 N N N 33.346 -41.205 -33.748 -6.128  -1.312 -1.924 H28 KNX 70 
KNX H30 H30 H  0 1 N N N 27.592 -32.378 -28.979 7.012   0.772  -2.799 H30 KNX 71 
KNX H32 H32 H  0 1 N N N 31.254 -45.169 -39.937 -10.144 2.338  2.778  H32 KNX 72 
KNX H33 H33 H  0 1 N N N 31.303 -43.553 -39.710 -8.943  3.007  1.812  H33 KNX 73 
KNX H34 H34 H  0 1 N N N 28.043 -43.456 -26.639 -2.960  3.171  1.392  H34 KNX 74 
KNX H35 H35 H  0 1 N N N 27.201 -42.708 -27.821 -3.635  2.124  0.290  H35 KNX 75 
KNX H37 H37 H  0 1 N N N 32.654 -41.935 -29.846 -4.795  -4.093 -2.986 H37 KNX 76 
KNX H38 H38 H  0 1 N N N 35.061 -42.211 -32.579 -6.610  -3.651 -1.959 H38 KNX 77 
KNX H39 H39 H  0 1 N N N 28.057 -39.464 -25.074 -1.183  5.196  -2.134 H39 KNX 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KNX N7  C4  SING N N 1  
KNX C4  N2  DOUB Y N 2  
KNX C4  C1  SING Y N 3  
KNX N2  C3  SING Y N 4  
KNX N3  C1  SING Y N 5  
KNX N3  C5  DOUB Y N 6  
KNX C1  C2  DOUB Y N 7  
KNX C3  N1  DOUB Y N 8  
KNX C5  N4  SING Y N 9  
KNX C2  N1  SING Y N 10 
KNX C2  N4  SING Y N 11 
KNX N4  C6  SING N N 12 
KNX C6  O1  SING N N 13 
KNX C6  C9  SING N N 14 
KNX O1  C7  SING N N 15 
KNX C9  O3  SING N N 16 
KNX C9  C8  SING N N 17 
KNX C7  C8  SING N N 18 
KNX C7  C10 SING N N 19 
KNX C8  O2  SING N N 20 
KNX C10 N5  SING N N 21 
KNX C16 C17 SING N N 22 
KNX C16 C15 SING N N 23 
KNX C17 C18 SING N N 24 
KNX N5  C15 SING N N 25 
KNX N5  C11 SING N N 26 
KNX C23 N6  SING N N 27 
KNX C23 C19 SING N N 28 
KNX N6  C22 SING N N 29 
KNX C18 C19 SING N N 30 
KNX C11 C12 SING N N 31 
KNX C19 C20 SING N N 32 
KNX C22 C21 SING N N 33 
KNX C12 C13 SING N N 34 
KNX C20 C21 DOUB Y N 35 
KNX C20 C24 SING Y N 36 
KNX C21 C27 SING Y N 37 
KNX N8  C13 SING N N 38 
KNX C13 C14 SING N N 39 
KNX C24 C25 DOUB Y N 40 
KNX C27 CL1 SING N N 41 
KNX C27 C26 DOUB Y N 42 
KNX C14 O5  DOUB N N 43 
KNX C14 O4  SING N N 44 
KNX C25 C26 SING Y N 45 
KNX C26 CL2 SING N N 46 
KNX C5  H1  SING N N 47 
KNX C6  H2  SING N N 48 
KNX C7  H3  SING N N 49 
KNX C8  H4  SING N N 50 
KNX C10 H5  SING N N 51 
KNX C10 H6  SING N N 52 
KNX C13 H7  SING N N 53 
KNX C15 H8  SING N N 54 
KNX C15 H9  SING N N 55 
KNX C17 H10 SING N N 56 
KNX C17 H11 SING N N 57 
KNX C22 H12 SING N N 58 
KNX C22 H13 SING N N 59 
KNX C24 H14 SING N N 60 
KNX C11 H15 SING N N 61 
KNX C11 H16 SING N N 62 
KNX C12 H17 SING N N 63 
KNX C12 H18 SING N N 64 
KNX C16 H19 SING N N 65 
KNX C16 H20 SING N N 66 
KNX C18 H21 SING N N 67 
KNX C18 H22 SING N N 68 
KNX C19 H23 SING N N 69 
KNX C23 H24 SING N N 70 
KNX C23 H25 SING N N 71 
KNX C25 H26 SING N N 72 
KNX C3  H27 SING N N 73 
KNX C9  H28 SING N N 74 
KNX N6  H30 SING N N 75 
KNX N7  H32 SING N N 76 
KNX N7  H33 SING N N 77 
KNX N8  H34 SING N N 78 
KNX N8  H35 SING N N 79 
KNX O2  H37 SING N N 80 
KNX O3  H38 SING N N 81 
KNX O4  H39 SING N N 82 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KNX SMILES           ACDLabs              12.01 "O=C(O)C(N)CCN(CCCCC1CNCc2c1ccc(Cl)c2Cl)CC1OC(n2cnc3c(N)ncnc32)C(O)C1O"                                                                                                                                                                                               
KNX InChI            InChI                1.03  "InChI=1S/C27H36Cl2N8O5/c28-17-5-4-15-14(9-32-10-16(15)20(17)29)3-1-2-7-36(8-6-18(30)27(40)41)11-19-22(38)23(39)26(42-19)37-13-35-21-24(31)33-12-34-25(21)37/h4-5,12-14,18-19,22-23,26,32,38-39H,1-3,6-11,30H2,(H,40,41)(H2,31,33,34)/t14-,18-,19+,22+,23+,26+/m0/s1" 
KNX InChIKey         InChI                1.03  VHXBLPZYVDYOPX-STPVDRQBSA-N                                                                                                                                                                                                                                           
KNX SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCN(CCCC[C@H]1CNCc2c(Cl)c(Cl)ccc12)C[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C(O)=O"                                                                                                                                                                   
KNX SMILES           CACTVS               3.385 "N[CH](CCN(CCCC[CH]1CNCc2c(Cl)c(Cl)ccc12)C[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C(O)=O"                                                                                                                                                                           
KNX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c2c1[C@H](CNC2)CCCCN(CC[C@@H](C(=O)O)N)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)Cl)Cl"                                                                                                                                                                
KNX SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(c2c1C(CNC2)CCCCN(CCC(C(=O)O)N)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)Cl)Cl"                                                                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
KNX "SYSTEMATIC NAME" ACDLabs              12.01 "5'-([(3S)-3-amino-3-carboxypropyl]{4-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]butyl}amino)-5'-deoxyadenosine"                                                                             
KNX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[4-[(4~{R})-7,8-bis(chloranyl)-1,2,3,4-tetrahydroisoquinolin-4-yl]butyl]amino]-2-azanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KNX "Create component" 2022-02-08 RCSB 
KNX "Initial release"  2023-02-15 RCSB 
# 
