data_KKX
# 
_chem_comp.id                                    KKX 
_chem_comp.name                                  "(2~{S},5~{S},6~{S})-2-acetamido-6-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-5,7-bis(oxidanyl)heptanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H28 N3 O10 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "PLP-(5S,6S)-N2-acetyl-DADH" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-27 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        465.392 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KKX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GYJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KKX N1  N1  N 0 1 Y N N -70.235 48.766 1.643  -3.209 0.355  2.656  N1  KKX 1  
KKX N3  N2  N 0 1 N N N -61.604 46.398 -6.481 3.265  0.485  1.609  N3  KKX 2  
KKX C4  C1  C 0 1 Y N N -68.529 49.726 -0.320 -2.549 1.293  0.171  C4  KKX 3  
KKX C5  C2  C 0 1 Y N N -69.076 50.600 0.632  -2.474 -0.060 0.463  C5  KKX 4  
KKX C6  C3  C 0 1 N N N -68.753 52.062 0.631  -2.026 -1.042 -0.587 C6  KKX 5  
KKX C7  C4  C 0 1 N N N -70.110 46.469 0.858  -3.748 2.579  3.514  C7  KKX 6  
KKX C8  C5  C 0 1 N N N -67.577 50.242 -1.375 -2.186 1.809  -1.197 C8  KKX 7  
KKX C10 C6  C 0 1 N N N -65.537 50.942 -3.257 -0.406 2.341  -3.641 C10 KKX 8  
KKX C13 C7  C 0 1 N N N -63.147 47.378 -4.785 3.270  0.477  -0.837 C13 KKX 9  
KKX C15 C8  C 0 1 N N N -60.944 48.465 -5.322 5.080  -0.630 0.446  C15 KKX 10 
KKX C17 C9  C 0 1 N N N -60.187 45.124 -7.961 2.194  0.748  3.823  C17 KKX 11 
KKX C1  C10 C 0 1 Y N N -69.921 50.067 1.585  -2.816 -0.497 1.729  C1  KKX 12 
KKX C2  C11 C 0 1 Y N N -69.728 47.913 0.755  -3.293 1.649  2.420  C2  KKX 13 
KKX C3  C12 C 0 1 Y N N -68.861 48.366 -0.252 -2.968 2.163  1.173  C3  KKX 14 
KKX O1  O1  O 0 1 N N N -69.232 52.689 -0.595 -1.987 -2.356 -0.025 O1  KKX 15 
KKX O2  O2  O 0 1 N N N -68.349 47.477 -1.152 -3.057 3.498  0.933  O2  KKX 16 
KKX N2  N3  N 0 1 N N N -67.016 49.186 -2.207 -0.761 2.164  -1.225 N2  KKX 17 
KKX C9  C13 C 0 1 N N S -66.067 49.506 -3.296 -0.086 1.546  -2.374 C9  KKX 18 
KKX O3  O3  O 0 1 N N N -66.532 51.866 -3.650 0.152  3.652  -3.536 O3  KKX 19 
KKX C11 C14 C 0 1 N N S -64.919 48.487 -3.271 1.425  1.548  -2.139 C11 KKX 20 
KKX P1  P1  P 0 1 N N N -68.514 53.999 -1.195 -1.771 -3.683 -0.911 P1  KKX 21 
KKX O4  O4  O 0 1 N N N -68.317 54.951 -0.027 -1.719 -4.970 0.054  O4  KKX 22 
KKX O5  O5  O 0 1 N N N -69.502 54.510 -2.226 -2.894 -3.826 -1.865 O5  KKX 23 
KKX O6  O6  O 0 1 N N N -67.203 53.544 -1.795 -0.387 -3.566 -1.725 O6  KKX 24 
KKX C12 C15 C 0 1 N N N -63.946 48.625 -4.431 1.755  0.669  -0.930 C12 KKX 25 
KKX O7  O7  O 0 1 N N N -65.499 47.184 -3.267 1.867  2.884  -1.890 O7  KKX 26 
KKX C14 C16 C 0 1 N N S -62.106 47.624 -5.881 3.607  -0.313 0.429  C14 KKX 27 
KKX O8  O8  O 0 1 N N N -60.959 49.692 -5.559 5.773  -0.230 1.351  O8  KKX 28 
KKX O9  O9  O 0 1 N N N -60.068 47.860 -4.670 5.622  -1.357 -0.544 O9  KKX 29 
KKX C16 C17 C 0 1 N N N -60.864 46.406 -7.594 2.652  -0.094 2.660  C16 KKX 30 
KKX O10 O10 O 0 1 N N N -60.731 47.424 -8.272 2.468  -1.293 2.670  O10 KKX 31 
KKX H1  H1  H 0 1 N N N -61.819 45.523 -6.048 3.481  1.431  1.634  H1  KKX 32 
KKX H2  H2  H 0 1 N N N -67.663 52.192 0.702  -2.726 -1.026 -1.423 H2  KKX 33 
KKX H3  H3  H 0 1 N N N -69.237 52.540 1.495  -1.032 -0.768 -0.941 H3  KKX 34 
KKX H4  H4  H 0 1 N N N -70.795 46.330 1.707  -2.883 2.923  4.082  H4  KKX 35 
KKX H5  H5  H 0 1 N N N -70.609 46.155 -0.071 -4.258 3.436  3.075  H5  KKX 36 
KKX H6  H6  H 0 1 N N N -69.206 45.861 1.013  -4.432 2.051  4.179  H6  KKX 37 
KKX H7  H7  H 0 1 N N N -66.751 50.768 -0.874 -2.382 1.036  -1.941 H7  KKX 38 
KKX H8  H8  H 0 1 N N N -68.121 50.946 -2.022 -2.785 2.691  -1.424 H8  KKX 39 
KKX H9  H9  H 0 1 N N N -64.679 51.026 -3.940 0.021  1.832  -4.506 H9  KKX 40 
KKX H10 H10 H 0 1 N N N -65.214 51.177 -2.232 -1.487 2.415  -3.761 H10 KKX 41 
KKX H11 H11 H 0 1 N N N -63.845 46.602 -5.132 3.622  -0.070 -1.711 H11 KKX 42 
KKX H12 H12 H 0 1 N N N -62.628 47.026 -3.881 3.757  1.451  -0.797 H12 KKX 43 
KKX H13 H13 H 0 1 N N N -59.599 45.269 -8.880 1.172  1.084  3.648  H13 KKX 44 
KKX H14 H14 H 0 1 N N N -59.519 44.815 -7.143 2.231  0.156  4.737  H14 KKX 45 
KKX H15 H15 H 0 1 N N N -60.945 44.345 -8.130 2.849  1.614  3.924  H15 KKX 46 
KKX H16 H16 H 0 1 N N N -70.350 50.732 2.320  -2.759 -1.550 1.962  H16 KKX 47 
KKX H17 H17 H 0 1 N N N -68.677 46.606 -0.959 -3.921 3.781  0.603  H17 KKX 48 
KKX H18 H18 H 0 1 N N N -67.790 48.715 -2.631 -0.308 1.910  -0.360 H18 KKX 49 
KKX H20 H20 H 0 1 N N N -66.595 49.379 -4.253 -0.435 0.520  -2.490 H20 KKX 50 
KKX H21 H21 H 0 1 N N N -66.178 52.747 -3.617 -0.012 4.213  -4.306 H21 KKX 51 
KKX H22 H22 H 0 1 N N N -64.357 48.636 -2.337 1.931  1.156  -3.021 H22 KKX 52 
KKX H23 H23 H 0 1 N N N -68.861 55.720 -0.149 -1.592 -5.807 -0.413 H23 KKX 53 
KKX H24 H24 H 0 1 N N N -67.228 53.661 -2.737 0.384  -3.393 -1.167 H24 KKX 54 
KKX H25 H25 H 0 1 N N N -63.231 49.422 -4.178 1.272  -0.302 -1.045 H25 KKX 55 
KKX H26 H26 H 0 1 N N N -64.523 48.919 -5.321 1.393  1.150  -0.022 H26 KKX 56 
KKX H27 H27 H 0 1 N N N -66.105 47.109 -2.539 1.458  3.296  -1.117 H27 KKX 57 
KKX H28 H28 H 0 1 N N N -62.592 48.220 -6.667 3.035  -1.242 0.441  H28 KKX 58 
KKX H29 H29 H 0 1 N N N -59.408 48.477 -4.378 6.571  -1.535 -0.489 H29 KKX 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KKX O10 C16 DOUB N N 1  
KKX C17 C16 SING N N 2  
KKX C16 N3  SING N N 3  
KKX N3  C14 SING N N 4  
KKX C14 C15 SING N N 5  
KKX C14 C13 SING N N 6  
KKX O8  C15 DOUB N N 7  
KKX C15 O9  SING N N 8  
KKX C13 C12 SING N N 9  
KKX C12 C11 SING N N 10 
KKX O3  C10 SING N N 11 
KKX C9  C11 SING N N 12 
KKX C9  C10 SING N N 13 
KKX C9  N2  SING N N 14 
KKX C11 O7  SING N N 15 
KKX O5  P1  DOUB N N 16 
KKX N2  C8  SING N N 17 
KKX O6  P1  SING N N 18 
KKX C8  C4  SING N N 19 
KKX P1  O1  SING N N 20 
KKX P1  O4  SING N N 21 
KKX O2  C3  SING N N 22 
KKX O1  C6  SING N N 23 
KKX C4  C3  DOUB Y N 24 
KKX C4  C5  SING Y N 25 
KKX C3  C2  SING Y N 26 
KKX C6  C5  SING N N 27 
KKX C5  C1  DOUB Y N 28 
KKX C2  C7  SING N N 29 
KKX C2  N1  DOUB Y N 30 
KKX C1  N1  SING Y N 31 
KKX N3  H1  SING N N 32 
KKX C6  H2  SING N N 33 
KKX C6  H3  SING N N 34 
KKX C7  H4  SING N N 35 
KKX C7  H5  SING N N 36 
KKX C7  H6  SING N N 37 
KKX C8  H7  SING N N 38 
KKX C8  H8  SING N N 39 
KKX C10 H9  SING N N 40 
KKX C10 H10 SING N N 41 
KKX C13 H11 SING N N 42 
KKX C13 H12 SING N N 43 
KKX C17 H13 SING N N 44 
KKX C17 H14 SING N N 45 
KKX C17 H15 SING N N 46 
KKX C1  H16 SING N N 47 
KKX O2  H17 SING N N 48 
KKX N2  H18 SING N N 49 
KKX C9  H20 SING N N 50 
KKX O3  H21 SING N N 51 
KKX C11 H22 SING N N 52 
KKX O4  H23 SING N N 53 
KKX O6  H24 SING N N 54 
KKX C12 H25 SING N N 55 
KKX C12 H26 SING N N 56 
KKX O7  H27 SING N N 57 
KKX C14 H28 SING N N 58 
KKX O9  H29 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KKX InChI            InChI                1.06  "InChI=1S/C17H28N3O10P/c1-9-16(24)12(11(5-18-9)8-30-31(27,28)29)6-19-14(7-21)15(23)4-3-13(17(25)26)20-10(2)22/h5,13-15,19,21,23-24H,3-4,6-8H2,1-2H3,(H,20,22)(H,25,26)(H2,27,28,29)/t13-,14-,15-/m0/s1" 
KKX InChIKey         InChI                1.06  FNGADGGFBAIBRP-KKUMJFAQSA-N                                                                                                                                                                             
KKX SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@@H](CC[C@H](O)[C@H](CO)NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"                                                                                                                                 
KKX SMILES           CACTVS               3.385 "CC(=O)N[CH](CC[CH](O)[CH](CO)NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"                                                                                                                                     
KKX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](CO)[C@H](CC[C@@H](C(=O)O)NC(=O)C)O)O"                                                                                                                                
KKX SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(CO)C(CCC(C(=O)O)NC(=O)C)O)O"                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           KKX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},5~{S},6~{S})-2-acetamido-6-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-5,7-bis(oxidanyl)heptanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KKX "Create component" 2022-09-27 PDBJ 
KKX "Initial release"  2023-02-22 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      KKX 
_pdbx_chem_comp_synonyms.name         "PLP-(5S,6S)-N2-acetyl-DADH" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
