data_KHX
# 
_chem_comp.id                                    KHX 
_chem_comp.name                                  "(1~{R},23~{R},24~{S},25~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-24,25-bis(oxidanyl)-26-oxa-2,4,6,9,14,17,21-heptazatetracyclo[21.2.1.0^{2,10}.0^{3,8}]hexacosa-3(8),4,6,9-tetraen-11-yne-18,20-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H33 N13 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-25 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        679.644 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KHX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZZF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KHX N1  N1  N 0 1 Y N N 20.294 4.205  8.062  8.636  1.962  -0.216 N1  KHX 1  
KHX C7  C1  C 0 1 N N N 14.346 9.554  10.756 0.198  0.164  1.195  C7  KHX 2  
KHX C8  C2  C 0 1 N N N 13.172 8.846  12.762 1.250  -0.763 3.160  C8  KHX 3  
KHX N2  N2  N 0 1 Y N N 19.699 6.329  9.032  6.432  2.643  -0.080 N2  KHX 4  
KHX C9  C3  C 0 1 N N N 12.752 7.523  12.160 1.253  -2.153 2.541  C9  KHX 5  
KHX O1  O1  O 0 1 N N N 14.051 6.062  10.170 1.791  -4.355 0.957  O1  KHX 6  
KHX C1  C4  C 0 1 Y N N 20.531 5.320  8.759  7.710  2.903  -0.256 C1  KHX 7  
KHX O5  O2  O 0 1 N N N 19.997 7.024  16.261 -1.412 0.232  -3.473 O5  KHX 8  
KHX C5  C5  C 0 1 N N R 17.334 8.282  9.130  3.501  1.490  0.404  C5  KHX 9  
KHX C6  C6  C 0 1 N N R 15.702 9.604  10.080 1.260  1.194  0.806  C6  KHX 10 
KHX N3  N3  N 0 1 Y N N 17.402 6.956  8.536  4.799  0.811  0.365  N3  KHX 11 
KHX C4  C7  C 0 1 Y N N 18.093 5.011  7.763  6.965  0.364  0.199  C4  KHX 12 
KHX O4  O3  O 0 1 N N N 19.930 9.722  16.605 -3.234 1.803  -2.697 O4  KHX 13 
KHX C3  C8  C 0 1 Y N N 16.416 6.302  7.838  5.016  -0.524 0.538  C3  KHX 14 
KHX O3  O4  O 0 1 N N N 19.186 8.155  13.459 -3.919 -1.449 -1.655 O3  KHX 15 
KHX C2  C9  C 0 1 Y N N 18.492 6.112  8.497  6.018  1.401  0.147  C2  KHX 16 
KHX N4  N4  N 0 1 Y N N 16.776 5.141  7.356  6.287  -0.784 0.440  N4  KHX 17 
KHX N   N5  N 0 1 N N N 18.841 2.907  6.822  9.295  -0.288 0.044  N   KHX 18 
KHX C   C10 C 0 1 Y N N 19.064 4.013  7.540  8.318  0.691  0.005  C   KHX 19 
KHX O   O5  O 0 1 N N N 16.302 8.296  10.101 2.569  0.747  1.221  O   KHX 20 
KHX C10 C11 C 0 1 N N N 14.333 5.846  11.345 1.889  -3.242 0.505  C10 KHX 21 
KHX C11 C12 C 0 1 N N N 15.347 4.785  11.719 1.720  -3.026 -0.982 C11 KHX 22 
KHX C12 C13 C 0 1 N N N 16.251 5.216  12.856 0.280  -3.328 -1.313 C12 KHX 23 
KHX C13 C14 C 0 1 N N N 17.035 7.252  13.972 -1.903 -2.757 -2.081 C13 KHX 24 
KHX C14 C15 C 0 1 N N R 18.506 7.231  14.341 -2.738 -1.544 -2.469 C14 KHX 25 
KHX C15 C16 C 0 1 N N R 19.871 9.119  14.237 -4.295 -0.068 -1.547 C15 KHX 26 
KHX C16 C17 C 0 1 N N R 19.125 9.176  15.566 -3.019 0.774  -1.724 C16 KHX 27 
KHX C17 C18 C 0 1 N N S 18.840 7.689  15.763 -1.966 -0.235 -2.239 C17 KHX 28 
KHX C18 C19 C 0 1 Y N N 18.916 11.115 12.993 -4.401 0.124  0.988  C18 KHX 29 
KHX C19 C20 C 0 1 Y N N 20.692 12.159 12.445 -6.400 0.937  1.248  C19 KHX 30 
KHX C20 C21 C 0 1 Y N N 21.693 13.027 11.974 -7.640 1.454  1.666  C20 KHX 31 
KHX C21 C22 C 0 1 Y N N 23.231 11.575 12.913 -8.341 1.479  -0.545 C21 KHX 32 
KHX C22 C23 C 0 1 Y N N 21.105 11.034 13.135 -6.213 0.725  -0.128 C22 KHX 33 
KHX C23 C24 C 0 1 N N N 17.564 10.703 13.132 -3.090 -0.387 1.272  C23 KHX 34 
KHX C24 C25 C 0 1 N N N 16.378 10.581 13.098 -2.060 -0.543 1.865  C24 KHX 35 
KHX C25 C26 C 0 1 N N N 14.914 10.502 12.963 -1.146 -0.632 3.022  C25 KHX 36 
KHX C26 C27 C 0 1 N N S 15.691 9.967  8.604  1.353  1.316  -0.731 C26 KHX 37 
KHX C27 C28 C 0 1 N N R 17.034 9.406  8.117  2.862  1.515  -1.002 C27 KHX 38 
KHX N10 N6  N 0 1 N N N 21.448 14.153 11.298 -7.910 1.677  3.006  N10 KHX 39 
KHX N11 N7  N 0 1 Y N N 22.978 12.697 12.234 -8.553 1.707  0.741  N11 KHX 40 
KHX N12 N8  N 0 1 Y N N 22.369 10.682 13.402 -7.195 0.997  -0.980 N12 KHX 41 
KHX N5  N9  N 0 1 N N N 14.433 9.350  12.207 0.121  0.068  2.675  N5  KHX 42 
KHX N6  N10 N 0 1 N N N 13.774 6.505  12.357 2.071  -2.152 1.303  N6  KHX 43 
KHX N7  N11 N 0 1 N N N 16.732 6.456  12.788 -0.469 -2.397 -1.980 N7  KHX 44 
KHX N8  N12 N 0 1 Y N N 19.952 10.365 13.490 -4.934 0.238  -0.272 N8  KHX 45 
KHX N9  N13 N 0 1 Y N N 19.305 12.210 12.359 -5.265 0.560  1.873  N9  KHX 46 
KHX O2  O6  O 0 1 N N N 16.525 4.446  13.774 -0.215 -4.391 -0.986 O2  KHX 47 
KHX O6  O7  O 0 1 N N N 15.603 11.374 8.412  0.607  2.444  -1.191 O6  KHX 48 
KHX O7  O8  O 0 1 N N N 18.054 10.397 8.128  3.095  2.774  -1.636 O7  KHX 49 
KHX H1  H1  H 0 1 N N N 13.825 10.504 10.567 -0.770 0.474  0.800  H1  KHX 50 
KHX H2  H2  H 0 1 N N N 13.768 8.726  10.320 0.465  -0.808 0.781  H2  KHX 51 
KHX H3  H3  H 0 1 N N N 12.382 9.587  12.568 1.149  -0.852 4.249  H3  KHX 52 
KHX H4  H4  H 0 1 N N N 13.293 8.715  13.847 2.185  -0.246 2.936  H4  KHX 53 
KHX H5  H5  H 0 1 N N N 12.583 7.657  11.081 1.708  -2.860 3.254  H5  KHX 54 
KHX H6  H6  H 0 1 N N N 11.819 7.191  12.639 0.248  -2.500 2.313  H6  KHX 55 
KHX H7  H7  H 0 1 N N N 21.531 5.419  9.155  8.013  3.923  -0.438 H7  KHX 56 
KHX H8  H8  H 0 1 N N N 20.181 7.326  17.143 -0.823 0.993  -3.377 H8  KHX 57 
KHX H9  H9  H 0 1 N N N 18.296 8.509  9.612  3.616  2.504  0.787  H9  KHX 58 
KHX H10 H10 H 0 1 N N N 16.342 10.319 10.617 1.031  2.162  1.251  H10 KHX 59 
KHX H11 H11 H 0 1 N N N 19.433 9.741  17.414 -2.483 2.402  -2.808 H11 KHX 60 
KHX H12 H12 H 0 1 N N N 15.427 6.712  7.699  4.246  -1.257 0.729  H12 KHX 61 
KHX H13 H13 H 0 1 N N N 19.677 2.360  6.783  9.050  -1.212 0.207  H13 KHX 62 
KHX H14 H14 H 0 1 N N N 18.113 2.372  7.251  10.226 -0.049 -0.091 H14 KHX 63 
KHX H15 H15 H 0 1 N N N 14.809 3.875  12.023 1.934  -1.982 -1.208 H15 KHX 64 
KHX H16 H16 H 0 1 N N N 15.969 4.566  10.838 2.384  -3.679 -1.535 H16 KHX 65 
KHX H17 H17 H 0 1 N N N 16.737 8.293  13.780 -2.250 -3.151 -1.122 H17 KHX 66 
KHX H18 H18 H 0 1 N N N 16.456 6.855  14.819 -2.022 -3.537 -2.841 H18 KHX 67 
KHX H19 H19 H 0 1 N N N 18.898 6.214  14.194 -3.033 -1.612 -3.529 H19 KHX 68 
KHX H20 H20 H 0 1 N N N 20.892 8.762  14.439 -4.993 0.171  -2.358 H20 KHX 69 
KHX H21 H21 H 0 1 N N N 18.182 9.730  15.448 -2.706 1.210  -0.777 H21 KHX 70 
KHX H22 H22 H 0 1 N N N 17.971 7.550  16.423 -1.186 -0.366 -1.493 H22 KHX 71 
KHX H23 H23 H 0 1 N N N 24.275 11.362 13.090 -9.130 1.686  -1.253 H23 KHX 72 
KHX H24 H24 H 0 1 N N N 14.567 11.414 12.456 -1.590 -0.117 3.878  H24 KHX 73 
KHX H25 H25 H 0 1 N N N 14.479 10.456 13.972 -0.942 -1.665 3.280  H25 KHX 74 
KHX H26 H26 H 0 1 N N N 14.867 9.444  8.097  0.997  0.403  -1.209 H26 KHX 75 
KHX H27 H27 H 0 1 N N N 16.911 8.973  7.114  3.250  0.702  -1.615 H27 KHX 76 
KHX H28 H28 H 0 1 N N N 22.313 14.604 11.076 -8.775 2.023  3.275  H28 KHX 77 
KHX H29 H29 H 0 1 N N N 20.960 13.935 10.453 -7.233 1.489  3.674  H29 KHX 78 
KHX H31 H31 H 0 1 N N N 14.067 6.293  13.289 2.696  -1.442 1.070  H31 KHX 79 
KHX H32 H32 H 0 1 N N N 16.892 6.859  11.887 -0.083 -1.597 -2.358 H32 KHX 80 
KHX H33 H33 H 0 1 N N N 14.761 11.685 8.724  0.539  2.506  -2.153 H33 KHX 81 
KHX H34 H34 H 0 1 N N N 18.869 10.017 7.822  2.714  2.845  -2.522 H34 KHX 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KHX N   C   SING N N 1  
KHX N4  C4  SING Y N 2  
KHX N4  C3  DOUB Y N 3  
KHX C   C4  DOUB Y N 4  
KHX C   N1  SING Y N 5  
KHX C4  C2  SING Y N 6  
KHX C3  N3  SING Y N 7  
KHX N1  C1  DOUB Y N 8  
KHX C27 O7  SING N N 9  
KHX C27 C26 SING N N 10 
KHX C27 C5  SING N N 11 
KHX O6  C26 SING N N 12 
KHX C2  N3  SING Y N 13 
KHX C2  N2  DOUB Y N 14 
KHX N3  C5  SING N N 15 
KHX C26 C6  SING N N 16 
KHX C1  N2  SING Y N 17 
KHX C5  O   SING N N 18 
KHX C6  O   SING N N 19 
KHX C6  C7  SING N N 20 
KHX O1  C10 DOUB N N 21 
KHX C7  N5  SING N N 22 
KHX N10 C20 SING N N 23 
KHX C10 C11 SING N N 24 
KHX C10 N6  SING N N 25 
KHX C11 C12 SING N N 26 
KHX C20 N11 DOUB Y N 27 
KHX C20 C19 SING Y N 28 
KHX C9  N6  SING N N 29 
KHX C9  C8  SING N N 30 
KHX N5  C8  SING N N 31 
KHX N5  C25 SING N N 32 
KHX N11 C21 SING Y N 33 
KHX N9  C19 SING Y N 34 
KHX N9  C18 DOUB Y N 35 
KHX C19 C22 DOUB Y N 36 
KHX N7  C12 SING N N 37 
KHX N7  C13 SING N N 38 
KHX C12 O2  DOUB N N 39 
KHX C21 N12 DOUB Y N 40 
KHX C25 C24 SING N N 41 
KHX C18 C23 SING N N 42 
KHX C18 N8  SING Y N 43 
KHX C24 C23 TRIP N N 44 
KHX C22 N12 SING Y N 45 
KHX C22 N8  SING Y N 46 
KHX O3  C15 SING N N 47 
KHX O3  C14 SING N N 48 
KHX N8  C15 SING N N 49 
KHX C13 C14 SING N N 50 
KHX C15 C16 SING N N 51 
KHX C14 C17 SING N N 52 
KHX C16 C17 SING N N 53 
KHX C16 O4  SING N N 54 
KHX C17 O5  SING N N 55 
KHX C7  H1  SING N N 56 
KHX C7  H2  SING N N 57 
KHX C8  H3  SING N N 58 
KHX C8  H4  SING N N 59 
KHX C9  H5  SING N N 60 
KHX C9  H6  SING N N 61 
KHX C1  H7  SING N N 62 
KHX O5  H8  SING N N 63 
KHX C5  H9  SING N N 64 
KHX C6  H10 SING N N 65 
KHX O4  H11 SING N N 66 
KHX C3  H12 SING N N 67 
KHX N   H13 SING N N 68 
KHX N   H14 SING N N 69 
KHX C11 H15 SING N N 70 
KHX C11 H16 SING N N 71 
KHX C13 H17 SING N N 72 
KHX C13 H18 SING N N 73 
KHX C14 H19 SING N N 74 
KHX C15 H20 SING N N 75 
KHX C16 H21 SING N N 76 
KHX C17 H22 SING N N 77 
KHX C21 H23 SING N N 78 
KHX C25 H24 SING N N 79 
KHX C25 H25 SING N N 80 
KHX C26 H26 SING N N 81 
KHX C27 H27 SING N N 82 
KHX N10 H28 SING N N 83 
KHX N10 H29 SING N N 84 
KHX N6  H31 SING N N 85 
KHX N7  H32 SING N N 86 
KHX O6  H33 SING N N 87 
KHX O7  H34 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KHX InChI            InChI                1.06  "InChI=1S/C28H33N13O8/c29-23-17-25(35-9-33-23)40(11-37-17)27-21(46)20(45)13(49-27)8-39-4-1-2-14-38-18-24(30)34-10-36-26(18)41(14)28-22(47)19(44)12(48-28)7-32-16(43)6-15(42)31-3-5-39/h9-13,19-22,27-28,44-47H,3-8H2,(H,31,42)(H,32,43)(H2,29,33,35)(H2,30,34,36)/t12-,13-,19-,20-,21-,22-,27-,28-/m1/s1" 
KHX InChIKey         InChI                1.06  PMOGMPCPFUCJNQ-QJYUSYPVSA-N                                                                                                                                                                                                                                                                               
KHX SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN4CCNC(=O)CC(=O)NC[C@H]5O[C@H]([C@H](O)[C@@H]5O)n6c(nc7c(N)ncnc67)C#CC4)[C@@H](O)[C@H]3O"                                                                                                                                                                                 
KHX SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN4CCNC(=O)CC(=O)NC[CH]5O[CH]([CH](O)[CH]5O)n6c(nc7c(N)ncnc67)C#CC4)[CH](O)[CH]3O"                                                                                                                                                                                            
KHX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN4CCNC(=O)CC(=O)NC[C@@H]5[C@H]([C@H]([C@@H](O5)n6c(nc7c6ncnc7N)C#CC4)O)O)O)O)N"                                                                                                                                                                          
KHX SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN4CCNC(=O)CC(=O)NCC5C(C(C(O5)n6c(nc7c6ncnc7N)C#CC4)O)O)O)O)N"                                                                                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           KHX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(1~{R},23~{R},24~{S},25~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-24,25-bis(oxidanyl)-26-oxa-2,4,6,9,14,17,21-heptazatetracyclo[21.2.1.0^{2,10}.0^{3,8}]hexacosa-3(8),4,6,9-tetraen-11-yne-18,20-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KHX "Create component"  2022-05-25 PDBE 
KHX "Modify descriptor" 2022-08-22 RCSB 
KHX "Initial release"   2023-01-11 RCSB 
# 
