data_KGX
# 
_chem_comp.id                                    KGX 
_chem_comp.name                                  "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethylcarbamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H36 N14 O9" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-25 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        712.674 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KGX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZZB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KGX N1  N1  N 0 1 N N N 15.765 5.312  11.075 5.914   3.902  0.045  N1  KGX 1  
KGX C7  C1  C 0 1 N N S 18.611 7.752  15.674 3.049   -0.521 -3.099 C7  KGX 2  
KGX C8  C2  C 0 1 Y N N 18.688 11.218 12.856 2.282   -2.453 0.552  C8  KGX 3  
KGX N2  N2  N 0 1 N N N 16.459 6.821  12.633 4.953   2.101  -1.087 N2  KGX 4  
KGX C9  C3  C 0 1 N N N 17.313 10.884 12.946 1.616   -1.186 0.508  C9  KGX 5  
KGX O1  O1  O 0 1 N N N 18.977 8.166  13.365 4.078   -0.696 -0.972 O1  KGX 6  
KGX C1  C4  C 0 1 N N N 15.170 4.058  10.635 5.882   5.310  0.449  C1  KGX 7  
KGX O5  O2  O 0 1 N N N 15.565 11.513 8.322  -2.989  4.298  -0.942 O5  KGX 8  
KGX C5  C5  C 0 1 N N R 19.578 9.182  14.147 3.855   -2.063 -1.394 C5  KGX 9  
KGX C6  C6  C 0 1 N N R 18.751 9.245  15.427 2.849   -1.956 -2.562 C6  KGX 10 
KGX N3  N3  N 0 1 Y N N 19.687 10.410 13.381 3.285   -2.849 -0.298 N3  KGX 11 
KGX C4  C7  C 0 1 N N R 18.306 7.242  14.268 4.151   0.072  -2.193 C4  KGX 12 
KGX O4  O3  O 0 1 N N N 15.922 8.364  9.937  -3.251  1.015  0.358  O4  KGX 13 
KGX C3  C8  C 0 1 N N N 16.820 7.252  13.966 3.873   1.550  -1.909 C3  KGX 14 
KGX O3  O4  O 0 1 N N N 19.416 9.915  16.487 3.154   -2.916 -3.575 O3  KGX 15 
KGX C2  C9  C 0 1 N N N 16.100 5.550  12.367 4.921   3.395  -0.711 C2  KGX 16 
KGX N4  N4  N 0 1 N N N 14.270 9.388  12.036 -0.625  1.214  1.492  N4  KGX 17 
KGX N   N5  N 0 1 N N N 13.212 3.262  9.368  7.085   7.038  1.699  N   KGX 18 
KGX C   C10 C 0 1 N N N 13.704 4.262  10.331 7.117   5.626  1.294  C   KGX 19 
KGX O   O5  O 0 1 N N N 16.114 4.670  13.228 3.995   4.105  -1.055 O   KGX 20 
KGX C10 C11 C 0 1 N N N 16.129 10.753 12.922 1.071   -0.147 0.473  C10 KGX 21 
KGX C11 C12 C 0 1 N N N 14.693 10.428 12.980 0.386   1.156  0.428  C11 KGX 22 
KGX C12 C13 C 0 1 N N N 14.141 9.835  10.639 -1.487  2.394  1.334  C12 KGX 23 
KGX C13 C14 C 0 1 N N R 15.487 9.738  9.953  -2.428  2.182  0.147  C13 KGX 24 
KGX C14 C15 C 0 1 N N R 16.934 8.286  8.939  -4.387  1.186  -0.517 C14 KGX 25 
KGX C15 C16 C 0 1 N N R 16.704 9.418  7.930  -4.746  2.684  -0.409 C15 KGX 26 
KGX C16 C17 C 0 1 N N S 15.447 10.112 8.476  -3.428  3.355  0.038  C16 KGX 27 
KGX C17 C18 C 0 1 Y N N 15.963 6.308  7.669  -5.709  -0.108 1.199  C17 KGX 28 
KGX C18 C19 C 0 1 Y N N 17.651 5.018  7.614  -7.366  -0.851 0.014  C18 KGX 29 
KGX C19 C20 C 0 1 Y N N 18.035 6.126  8.350  -6.547  -0.094 -0.840 C19 KGX 30 
KGX C20 C21 C 0 1 Y N N 20.072 5.346  8.639  -7.983  -0.535 -2.579 C20 KGX 31 
KGX C21 C22 C 0 1 Y N N 18.626 4.021  7.414  -8.522  -1.440 -0.525 C21 KGX 32 
KGX C22 C23 C 0 1 N N N 13.098 8.655  12.515 0.005   1.196  2.819  C22 KGX 33 
KGX C23 C24 C 0 1 N N N 11.864 9.461  12.855 -1.025  0.840  3.859  C23 KGX 34 
KGX C24 C25 C 0 1 Y N N 20.534 12.163 12.362 2.839   -4.463 1.164  C24 KGX 35 
KGX C25 C26 C 0 1 Y N N 20.874 11.021 13.066 3.654   -4.119 0.070  C25 KGX 36 
KGX C26 C27 C 0 1 Y N N 23.026 11.433 12.866 4.667   -6.178 0.200  C26 KGX 37 
KGX C27 C28 C 0 1 Y N N 21.593 12.955 11.884 3.008   -5.735 1.743  C27 KGX 38 
KGX N10 N6  N 0 1 Y N N 19.157 12.290 12.248 2.031   -3.410 1.414  N10 KGX 39 
KGX N11 N7  N 0 1 Y N N 22.109 10.600 13.358 4.545   -4.999 -0.373 N11 KGX 40 
KGX N12 N8  N 0 1 Y N N 22.848 12.559 12.175 3.926   -6.547 1.229  N12 KGX 41 
KGX N13 N9  N 0 1 N N N 21.427 14.039 11.116 2.237   -6.131 2.821  N13 KGX 42 
KGX N5  N10 N 0 1 Y N N 16.947 6.960  8.370  -5.507  0.357  -0.066 N5  KGX 43 
KGX N6  N11 N 0 1 Y N N 16.332 5.142  7.192  -6.800  -0.816 1.244  N6  KGX 44 
KGX N7  N12 N 0 1 Y N N 19.239 6.347  8.901  -6.891  0.036  -2.118 N7  KGX 45 
KGX N8  N13 N 0 1 Y N N 19.852 4.234  7.936  -8.784  -1.255 -1.815 N8  KGX 46 
KGX N9  N14 N 0 1 N N N 18.401 2.869  6.761  -9.367  -2.197 0.267  N9  KGX 47 
KGX O2  O6  O 0 1 N N N 19.786 7.184  16.249 3.483   -0.551 -4.460 O2  KGX 48 
KGX O6  O7  O 0 1 N N N 17.850 10.268 7.961  -5.161  3.192  -1.679 O6  KGX 49 
KGX O7  O8  O 0 1 N N N 10.923 8.964  13.448 -0.682  0.797  5.156  O7  KGX 50 
KGX O8  O9  O 0 1 N N N 11.878 10.719 12.484 -2.160  0.592  3.526  O8  KGX 51 
KGX H1  H1  H 0 1 N N N 15.933 6.027  10.396 6.653   3.336  0.319  H1  KGX 52 
KGX H2  H2  H 0 1 N N N 17.739 7.572  16.320 2.128   0.054  -3.006 H2  KGX 53 
KGX H3  H3  H 0 1 N N N 16.476 7.486  11.887 5.691   1.535  -0.813 H3  KGX 54 
KGX H4  H4  H 0 1 N N N 15.276 3.305  11.430 5.878   5.942  -0.439 H4  KGX 55 
KGX H5  H5  H 0 1 N N N 15.685 3.708  9.728  4.983   5.500  1.034  H5  KGX 56 
KGX H6  H6  H 0 1 N N N 14.785 11.936 8.661  -3.609  5.024  -1.095 H6  KGX 57 
KGX H7  H7  H 0 1 N N N 20.592 8.859  14.427 4.788   -2.511 -1.738 H7  KGX 58 
KGX H8  H8  H 0 1 N N N 17.766 9.689  15.220 1.830   -2.090 -2.201 H8  KGX 59 
KGX H9  H9  H 0 1 N N N 18.704 6.224  14.149 5.129   -0.048 -2.659 H9  KGX 60 
KGX H10 H10 H 0 1 N N N 16.452 8.280  14.103 2.926   1.646  -1.378 H10 KGX 61 
KGX H11 H11 H 0 1 N N N 16.322 6.585  14.686 3.818   2.096  -2.851 H11 KGX 62 
KGX H12 H12 H 0 1 N N N 18.858 9.925  17.256 2.553   -2.893 -4.332 H12 KGX 63 
KGX H14 H14 H 0 1 N N N 12.242 3.422  9.187  6.230   7.255  2.188  H14 KGX 64 
KGX H15 H15 H 0 1 N N N 13.727 3.339  8.515  7.891   7.272  2.259  H15 KGX 65 
KGX H17 H17 H 0 1 N N N 13.563 5.267  9.907  7.121   4.994  2.182  H17 KGX 66 
KGX H18 H18 H 0 1 N N N 13.129 4.173  11.265 8.017   5.437  0.709  H18 KGX 67 
KGX H19 H19 H 0 1 N N N 14.124 11.344 12.762 -0.098  1.278  -0.541 H19 KGX 68 
KGX H20 H20 H 0 1 N N N 14.459 10.085 13.998 1.114   1.954  0.574  H20 KGX 69 
KGX H21 H21 H 0 1 N N N 13.793 10.878 10.618 -2.074  2.538  2.241  H21 KGX 70 
KGX H22 H22 H 0 1 N N N 13.415 9.196  10.115 -0.869  3.274  1.157  H22 KGX 71 
KGX H23 H23 H 0 1 N N N 16.218 10.373 10.475 -1.857  2.082  -0.776 H23 KGX 72 
KGX H24 H24 H 0 1 N N N 17.909 8.467  9.414  -4.117  0.933  -1.543 H24 KGX 73 
KGX H25 H25 H 0 1 N N N 16.515 9.010  6.926  -5.525  2.840  0.337  H25 KGX 74 
KGX H26 H26 H 0 1 N N N 14.543 9.710  7.996  -3.555  3.842  1.004  H26 KGX 75 
KGX H27 H27 H 0 1 N N N 14.974 6.718  7.523  -5.057  0.080  2.039  H27 KGX 76 
KGX H28 H28 H 0 1 N N N 21.065 5.446  9.052  -8.234  -0.409 -3.622 H28 KGX 77 
KGX H29 H29 H 0 1 N N N 12.817 7.935  11.732 0.805   0.456  2.831  H29 KGX 78 
KGX H30 H30 H 0 1 N N N 13.397 8.111  13.423 0.418   2.181  3.038  H30 KGX 79 
KGX H31 H31 H 0 1 N N N 24.054 11.158 13.053 5.401   -6.870 -0.186 H31 KGX 80 
KGX H32 H32 H 0 1 N N N 22.321 14.409 10.862 2.362   -7.010 3.210  H32 KGX 81 
KGX H33 H33 H 0 1 N N N 20.924 13.788 10.289 1.570   -5.529 3.187  H33 KGX 82 
KGX H34 H34 H 0 1 N N N 19.233 2.315  6.765  -9.165  -2.325 1.207  H34 KGX 83 
KGX H35 H35 H 0 1 N N N 17.664 2.367  7.214  -10.162 -2.598 -0.117 H35 KGX 84 
KGX H36 H36 H 0 1 N N N 19.918 7.542  17.119 2.841   -0.942 -5.069 H36 KGX 85 
KGX H37 H37 H 0 1 N N N 18.601 9.800  7.616  -5.342  4.142  -1.682 H37 KGX 86 
KGX H38 H38 H 0 1 N N N 10.249 9.620  13.580 -1.377  0.563  5.787  H38 KGX 87 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KGX N9  C21 SING N N 1  
KGX N6  C18 SING Y N 2  
KGX N6  C17 DOUB Y N 3  
KGX C21 C18 DOUB Y N 4  
KGX C21 N8  SING Y N 5  
KGX C18 C19 SING Y N 6  
KGX C17 N5  SING Y N 7  
KGX C15 O6  SING N N 8  
KGX C15 C16 SING N N 9  
KGX C15 C14 SING N N 10 
KGX N8  C20 DOUB Y N 11 
KGX O5  C16 SING N N 12 
KGX C19 N5  SING Y N 13 
KGX C19 N7  DOUB Y N 14 
KGX N5  C14 SING N N 15 
KGX C16 C13 SING N N 16 
KGX C20 N7  SING Y N 17 
KGX C14 O4  SING N N 18 
KGX N   C   SING N N 19 
KGX O4  C13 SING N N 20 
KGX C13 C12 SING N N 21 
KGX C   C1  SING N N 22 
KGX C1  N1  SING N N 23 
KGX C12 N4  SING N N 24 
KGX N1  C2  SING N N 25 
KGX N13 C27 SING N N 26 
KGX C27 N12 DOUB Y N 27 
KGX C27 C24 SING Y N 28 
KGX N4  C22 SING N N 29 
KGX N4  C11 SING N N 30 
KGX N12 C26 SING Y N 31 
KGX N10 C24 SING Y N 32 
KGX N10 C8  DOUB Y N 33 
KGX C24 C25 DOUB Y N 34 
KGX C2  N2  SING N N 35 
KGX C2  O   DOUB N N 36 
KGX O8  C23 DOUB N N 37 
KGX C22 C23 SING N N 38 
KGX N2  C3  SING N N 39 
KGX C23 O7  SING N N 40 
KGX C8  C9  SING N N 41 
KGX C8  N3  SING Y N 42 
KGX C26 N11 DOUB Y N 43 
KGX C10 C9  TRIP N N 44 
KGX C10 C11 SING N N 45 
KGX C25 N11 SING Y N 46 
KGX C25 N3  SING Y N 47 
KGX O1  C5  SING N N 48 
KGX O1  C4  SING N N 49 
KGX N3  C5  SING N N 50 
KGX C3  C4  SING N N 51 
KGX C5  C6  SING N N 52 
KGX C4  C7  SING N N 53 
KGX C6  C7  SING N N 54 
KGX C6  O3  SING N N 55 
KGX C7  O2  SING N N 56 
KGX N1  H1  SING N N 57 
KGX C7  H2  SING N N 58 
KGX N2  H3  SING N N 59 
KGX C1  H4  SING N N 60 
KGX C1  H5  SING N N 61 
KGX O5  H6  SING N N 62 
KGX C5  H7  SING N N 63 
KGX C6  H8  SING N N 64 
KGX C4  H9  SING N N 65 
KGX C3  H10 SING N N 66 
KGX C3  H11 SING N N 67 
KGX O3  H12 SING N N 68 
KGX N   H14 SING N N 69 
KGX N   H15 SING N N 70 
KGX C   H17 SING N N 71 
KGX C   H18 SING N N 72 
KGX C11 H19 SING N N 73 
KGX C11 H20 SING N N 74 
KGX C12 H21 SING N N 75 
KGX C12 H22 SING N N 76 
KGX C13 H23 SING N N 77 
KGX C14 H24 SING N N 78 
KGX C15 H25 SING N N 79 
KGX C16 H26 SING N N 80 
KGX C17 H27 SING N N 81 
KGX C20 H28 SING N N 82 
KGX C22 H29 SING N N 83 
KGX C22 H30 SING N N 84 
KGX C26 H31 SING N N 85 
KGX N13 H32 SING N N 86 
KGX N13 H33 SING N N 87 
KGX N9  H34 SING N N 88 
KGX N9  H35 SING N N 89 
KGX O2  H36 SING N N 90 
KGX O6  H37 SING N N 91 
KGX O7  H38 SING N N 92 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KGX InChI            InChI                1.06  "InChI=1S/C28H36N14O9/c29-3-4-32-28(49)33-6-12-18(45)21(48)27(50-12)42-14(39-17-23(31)35-10-37-25(17)42)2-1-5-40(8-15(43)44)7-13-19(46)20(47)26(51-13)41-11-38-16-22(30)34-9-36-24(16)41/h9-13,18-21,26-27,45-48H,3-8,29H2,(H,43,44)(H2,30,34,36)(H2,31,35,37)(H2,32,33,49)/t12-,13-,18-,19-,20-,21-,26-,27-/m1/s1" 
KGX InChIKey         InChI                1.06  NHZDFSAEZKJJHU-GMIOVBLFSA-N                                                                                                                                                                                                                                                                                         
KGX SMILES_CANONICAL CACTVS               3.385 "NCCNC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)CC(O)=O"                                                                                                                                                                                          
KGX SMILES           CACTVS               3.385 "NCCNC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)CC(O)=O"                                                                                                                                                                                                    
KGX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CNC(=O)NCCN)O)O)N)CC(=O)O)O)O)N"                                                                                                                                                                                  
KGX SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CNC(=O)NCCN)O)O)N)CC(=O)O)O)O)N"                                                                                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           KGX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethylcarbamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KGX "Create component"  2022-05-25 PDBE 
KGX "Modify descriptor" 2022-08-22 RCSB 
KGX "Initial release"   2023-01-11 RCSB 
# 
