data_K3X
# 
_chem_comp.id                                    K3X 
_chem_comp.name                                  "[(3~{R})-3-azanylpiperidin-1-yl]-[2-[1-[(4-fluorophenyl)methyl]indol-2-yl]-3-methyl-imidazo[1,2-a]pyridin-7-yl]methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H28 F N5 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-07 
_chem_comp.pdbx_modified_date                    2023-03-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        481.564 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     K3X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GOD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
K3X C36 C1  C 0 1 Y N N -8.416  13.235 44.743 6.090  3.747  0.018  C36 K3X 1  
K3X C35 C2  C 0 1 Y N N -7.058  13.397 44.876 6.367  2.776  0.972  C35 K3X 2  
K3X C37 C3  C 0 1 Y N N -8.956  12.725 43.585 4.881  3.771  -0.617 C37 K3X 3  
K3X C28 C4  C 0 1 Y N N -5.192  14.457 40.471 4.884  -1.629 1.034  C28 K3X 4  
K3X C32 C5  C 0 1 Y N N -3.299  14.101 41.899 2.700  -2.219 0.249  C32 K3X 5  
K3X C34 C6  C 0 1 Y N N -6.213  13.055 43.853 5.430  1.817  1.291  C34 K3X 6  
K3X C29 C7  C 0 1 Y N N -4.881  15.794 40.381 5.410  -2.747 0.416  C29 K3X 7  
K3X C31 C8  C 0 1 Y N N -2.989  15.444 41.813 3.222  -3.342 -0.365 C31 K3X 8  
K3X C22 C9  C 0 1 Y N N -8.340  11.838 41.250 2.558  2.547  -0.784 C22 K3X 9  
K3X C23 C10 C 0 1 Y N N -8.123  12.364 42.547 3.914  2.812  -0.304 C23 K3X 10 
K3X C27 C11 C 0 1 Y N N -4.400  13.616 41.227 3.529  -1.366 0.953  C27 K3X 11 
K3X C24 C12 C 0 1 Y N N -6.767  12.550 42.703 4.194  1.819  0.654  C24 K3X 12 
K3X C30 C13 C 0 1 Y N N -3.783  16.282 41.054 4.579  -3.605 -0.285 C30 K3X 13 
K3X C3  C14 C 0 1 Y N N -6.798  11.295 39.272 0.777  0.835  -0.295 C3  K3X 14 
K3X C21 C15 C 0 1 Y N N -7.104  11.701 40.656 2.109  1.455  -0.118 C21 K3X 15 
K3X C2  C16 C 0 1 Y N N -7.351  11.962 38.205 0.265  0.341  -1.474 C2  K3X 16 
K3X C5  C17 C 0 1 Y N N -5.864  10.480 37.543 -1.208 0.068  0.141  C5  K3X 17 
K3X C6  C18 C 0 1 Y N N -5.109  9.807  36.572 -2.429 -0.337 0.712  C6  K3X 18 
K3X C18 C19 C 0 1 Y N N -6.219  11.109 34.872 -3.108 -1.124 -1.471 C18 K3X 19 
K3X C19 C20 C 0 1 Y N N -6.926  11.751 35.792 -1.929 -0.728 -1.985 C19 K3X 20 
K3X C7  C21 C 0 1 Y N N -5.293  10.114 35.287 -3.384 -0.934 -0.093 C7  K3X 21 
K3X C8  C22 C 0 1 N N N -4.484  9.412  34.258 -4.675 -1.367 0.476  C8  K3X 22 
K3X C14 C23 C 0 1 N N N -3.998  12.595 32.716 -8.057 -0.360 0.603  C14 K3X 23 
K3X C13 C24 C 0 1 N N N -3.148  12.313 31.510 -7.922 1.148  0.377  C13 K3X 24 
K3X C15 C25 C 0 1 N N N -3.534  11.718 33.841 -6.869 -0.855 1.434  C15 K3X 25 
K3X C10 C26 C 0 1 N N N -3.011  9.962  32.321 -5.431 0.961  0.421  C10 K3X 26 
K3X C11 C27 C 0 1 N N R -3.290  10.867 31.134 -6.635 1.436  -0.400 C11 K3X 27 
K3X C1  C28 C 0 1 N N N -8.372  13.029 38.165 0.951  0.331  -2.816 C1  K3X 28 
K3X C26 C29 C 0 1 N N N -4.733  12.180 41.345 2.956  -0.150 1.633  C26 K3X 29 
K3X N4  N1  N 0 1 Y N N -5.871  10.375 38.852 -0.139 0.652  0.666  N4  K3X 30 
K3X N25 N2  N 0 1 Y N N -6.168  12.135 41.555 3.082  1.010  0.747  N25 K3X 31 
K3X N20 N3  N 0 1 Y N N -6.760  11.417 37.105 -0.980 -0.137 -1.197 N20 K3X 32 
K3X N9  N4  N 0 1 N N N -3.794  10.340 33.473 -5.624 -0.454 0.766  N9  K3X 33 
K3X N16 N5  N 0 1 N N N -2.366  10.610 30.039 -6.522 2.880  -0.644 N16 K3X 34 
K3X O17 O1  O 0 1 N N N -4.444  8.170  34.140 -4.884 -2.547 0.683  O17 K3X 35 
K3X F33 F1  F 0 1 N N N -3.484  17.591 40.964 5.092  -4.699 -0.890 F33 K3X 36 
K3X H1  H1  H 0 1 N N N -9.068  13.512 45.558 6.836  4.491  -0.220 H1  K3X 37 
K3X H2  H2  H 0 1 N N N -6.654  13.797 45.794 7.326  2.773  1.468  H2  K3X 38 
K3X H3  H3  H 0 1 N N N -10.025 12.608 43.489 4.673  4.529  -1.357 H3  K3X 39 
K3X H4  H4  H 0 1 N N N -6.054  14.066 39.951 5.531  -0.962 1.584  H4  K3X 40 
K3X H5  H5  H 0 1 N N N -2.684  13.437 42.488 1.641  -2.013 0.186  H5  K3X 41 
K3X H6  H6  H 0 1 N N N -5.144  13.179 43.948 5.655  1.066  2.034  H6  K3X 42 
K3X H7  H7  H 0 1 N N N -5.493  16.456 39.787 6.468  -2.952 0.479  H7  K3X 43 
K3X H8  H8  H 0 1 N N N -2.130  15.837 42.336 2.573  -4.013 -0.907 H8  K3X 44 
K3X H9  H9  H 0 1 N N N -9.295  11.591 40.809 2.017  3.115  -1.527 H9  K3X 45 
K3X H10 H10 H 0 1 N N N -4.391  9.053  36.859 -2.619 -0.184 1.764  H10 K3X 46 
K3X H11 H11 H 0 1 N N N -6.345  11.339 33.824 -3.845 -1.589 -2.109 H11 K3X 47 
K3X H12 H12 H 0 1 N N N -7.622  12.526 35.507 -1.730 -0.878 -3.036 H12 K3X 48 
K3X H13 H13 H 0 1 N N N -3.896  13.652 33.003 -8.985 -0.566 1.135  H13 K3X 49 
K3X H14 H14 H 0 1 N N N -5.052  12.378 32.486 -8.067 -0.873 -0.359 H14 K3X 50 
K3X H15 H15 H 0 1 N N N -2.095  12.531 31.743 -8.778 1.508  -0.194 H15 K3X 51 
K3X H16 H16 H 0 1 N N N -3.477  12.945 30.672 -7.887 1.658  1.339  H16 K3X 52 
K3X H17 H17 H 0 1 N N N -2.456  11.863 34.007 -6.909 -0.412 2.429  H17 K3X 53 
K3X H18 H18 H 0 1 N N N -4.083  11.969 34.760 -6.909 -1.941 1.517  H18 K3X 54 
K3X H19 H19 H 0 1 N N N -3.258  8.926  32.046 -4.521 1.073  -0.168 H19 K3X 55 
K3X H20 H20 H 0 1 N N N -1.943  10.029 32.578 -5.352 1.552  1.333  H20 K3X 56 
K3X H21 H21 H 0 1 N N N -4.320  10.689 30.792 -6.658 0.906  -1.352 H21 K3X 57 
K3X H22 H22 H 0 1 N N N -9.373  12.577 38.102 1.445  -0.629 -2.964 H22 K3X 58 
K3X H23 H23 H 0 1 N N N -8.302  13.638 39.078 0.212  0.486  -3.603 H23 K3X 59 
K3X H24 H24 H 0 1 N N N -8.202  13.667 37.285 1.691  1.130  -2.851 H24 K3X 60 
K3X H25 H25 H 0 1 N N N -4.462  11.645 40.423 1.903  -0.322 1.858  H25 K3X 61 
K3X H26 H26 H 0 1 N N N -4.205  11.731 42.199 3.500  0.039  2.558  H26 K3X 62 
K3X H27 H27 H 0 1 N N N -2.435  9.652  29.762 -5.680 3.096  -1.155 H27 K3X 63 
K3X H28 H28 H 0 1 N N N -2.596  11.198 29.264 -7.337 3.230  -1.125 H28 K3X 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
K3X N16 C11 SING N N 1  
K3X C11 C13 SING N N 2  
K3X C11 C10 SING N N 3  
K3X C13 C14 SING N N 4  
K3X C10 N9  SING N N 5  
K3X C14 C15 SING N N 6  
K3X N9  C15 SING N N 7  
K3X N9  C8  SING N N 8  
K3X O17 C8  DOUB N N 9  
K3X C8  C7  SING N N 10 
K3X C18 C7  SING Y N 11 
K3X C18 C19 DOUB Y N 12 
K3X C7  C6  DOUB Y N 13 
K3X C19 N20 SING Y N 14 
K3X C6  C5  SING Y N 15 
K3X N20 C5  SING Y N 16 
K3X N20 C2  SING Y N 17 
K3X C5  N4  DOUB Y N 18 
K3X C1  C2  SING N N 19 
K3X C2  C3  DOUB Y N 20 
K3X N4  C3  SING Y N 21 
K3X C3  C21 SING N N 22 
K3X C29 C28 DOUB Y N 23 
K3X C29 C30 SING Y N 24 
K3X C28 C27 SING Y N 25 
K3X C21 C22 DOUB Y N 26 
K3X C21 N25 SING Y N 27 
K3X F33 C30 SING N N 28 
K3X C30 C31 DOUB Y N 29 
K3X C27 C26 SING N N 30 
K3X C27 C32 DOUB Y N 31 
K3X C22 C23 SING Y N 32 
K3X C26 N25 SING N N 33 
K3X N25 C24 SING Y N 34 
K3X C31 C32 SING Y N 35 
K3X C23 C24 DOUB Y N 36 
K3X C23 C37 SING Y N 37 
K3X C24 C34 SING Y N 38 
K3X C37 C36 DOUB Y N 39 
K3X C34 C35 DOUB Y N 40 
K3X C36 C35 SING Y N 41 
K3X C36 H1  SING N N 42 
K3X C35 H2  SING N N 43 
K3X C37 H3  SING N N 44 
K3X C28 H4  SING N N 45 
K3X C32 H5  SING N N 46 
K3X C34 H6  SING N N 47 
K3X C29 H7  SING N N 48 
K3X C31 H8  SING N N 49 
K3X C22 H9  SING N N 50 
K3X C6  H10 SING N N 51 
K3X C18 H11 SING N N 52 
K3X C19 H12 SING N N 53 
K3X C14 H13 SING N N 54 
K3X C14 H14 SING N N 55 
K3X C13 H15 SING N N 56 
K3X C13 H16 SING N N 57 
K3X C15 H17 SING N N 58 
K3X C15 H18 SING N N 59 
K3X C10 H19 SING N N 60 
K3X C10 H20 SING N N 61 
K3X C11 H21 SING N N 62 
K3X C1  H22 SING N N 63 
K3X C1  H23 SING N N 64 
K3X C1  H24 SING N N 65 
K3X C26 H25 SING N N 66 
K3X C26 H26 SING N N 67 
K3X N16 H27 SING N N 68 
K3X N16 H28 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
K3X InChI            InChI                1.06  "InChI=1S/C29H28FN5O/c1-19-28(32-27-16-22(12-14-34(19)27)29(36)33-13-4-6-24(31)18-33)26-15-21-5-2-3-7-25(21)35(26)17-20-8-10-23(30)11-9-20/h2-3,5,7-12,14-16,24H,4,6,13,17-18,31H2,1H3/t24-/m1/s1" 
K3X InChIKey         InChI                1.06  DUVCPNSLXBKGOK-XMMPIXPASA-N                                                                                                                                                                        
K3X SMILES_CANONICAL CACTVS               3.385 "Cc1n2ccc(cc2nc1c3cc4ccccc4n3Cc5ccc(F)cc5)C(=O)N6CCC[C@@H](N)C6"                                                                                                                                   
K3X SMILES           CACTVS               3.385 "Cc1n2ccc(cc2nc1c3cc4ccccc4n3Cc5ccc(F)cc5)C(=O)N6CCC[CH](N)C6"                                                                                                                                     
K3X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(nc2n1ccc(c2)C(=O)N3CCC[C@H](C3)N)c4cc5ccccc5n4Cc6ccc(cc6)F"                                                                                                                                  
K3X SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(nc2n1ccc(c2)C(=O)N3CCCC(C3)N)c4cc5ccccc5n4Cc6ccc(cc6)F"                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           K3X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(3~{R})-3-azanylpiperidin-1-yl]-[2-[1-[(4-fluorophenyl)methyl]indol-2-yl]-3-methyl-imidazo[1,2-a]pyridin-7-yl]methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
K3X "Create component" 2022-09-07 PDBJ 
K3X "Initial release"  2023-03-29 RCSB 
# 
