data_JNX
# 
_chem_comp.id                                    JNX 
_chem_comp.name                                  "(2~{R},5~{S})-5-(aminocarbonyloxymethyl)-2-[(1~{S})-1-methoxy-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-5,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H19 N3 O8 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "hydrolysed cefoxitin" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-06 
_chem_comp.pdbx_modified_date                    2023-03-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        445.467 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JNX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZO6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JNX C10  C1  C 0 1 N N N 28.502 1.183  12.998 -3.258 1.011  -1.409 C10  JNX 1  
JNX C11  C2  C 0 1 Y N N 28.755 -0.043 13.929 -4.005 1.936  -0.483 C11  JNX 2  
JNX C12  C3  C 0 1 Y N N 29.386 -1.261 13.715 -3.532 3.085  0.002  C12  JNX 3  
JNX C13  C4  C 0 1 Y N N 29.448 -2.154 14.899 -4.401 3.768  0.836  C13  JNX 4  
JNX C14  C5  C 0 1 Y N N 28.881 -1.615 16.043 -5.580 3.174  1.027  C14  JNX 5  
JNX C02  C6  C 0 1 N N N 33.504 5.704  17.800 2.684  0.830  -1.216 C02  JNX 6  
JNX C04  C7  C 0 1 N N N 32.171 5.005  17.016 2.113  -0.132 -0.242 C04  JNX 7  
JNX C06  C8  C 0 1 N N R 31.045 4.407  14.923 0.026  -1.159 0.472  C06  JNX 8  
JNX C07  C9  C 0 1 N N S 31.745 3.048  14.344 -0.970 -1.896 -0.426 C07  JNX 9  
JNX C09  C10 C 0 1 N N N 29.581 2.318  13.249 -2.477 0.010  -0.596 C09  JNX 10 
JNX C18  C11 C 0 1 N N N 33.004 2.351  12.375 -1.096 -3.461 -2.237 C18  JNX 11 
JNX C19  C12 C 0 1 N N N 32.794 2.343  15.410 -1.917 -2.698 0.428  C19  JNX 12 
JNX C23  C13 C 0 1 N N N 29.957 3.625  17.400 2.418  -1.313 1.941  C23  JNX 13 
JNX C24  C14 C 0 1 N N S 30.958 4.629  18.058 3.101  -0.719 0.707  C24  JNX 14 
JNX C25  C15 C 0 1 N N N 30.243 5.991  18.442 4.074  0.374  1.153  C25  JNX 15 
JNX C27  C16 C 0 1 N N N 27.874 6.278  19.141 5.792  1.761  0.246  C27  JNX 16 
JNX N05  N1  N 0 1 N N N 32.073 5.115  15.738 0.886  -0.314 -0.347 N05  JNX 17 
JNX N08  N2  N 0 1 N N N 30.705 2.039  14.057 -1.728 -0.923 -1.216 N08  JNX 18 
JNX N28  N3  N 0 1 N N N 26.734 5.420  19.323 6.571  2.200  -0.762 N28  JNX 19 
JNX O01  O1  O 0 1 N N N 33.491 5.625  19.050 3.189  0.426  -2.243 O01  JNX 20 
JNX O03  O2  O 0 1 N N N 34.363 6.221  17.065 2.641  2.152  -0.961 O03  JNX 21 
JNX O16  O3  O 0 1 N N N 29.377 3.395  12.724 -2.523 0.045  0.615  O16  JNX 22 
JNX O17  O4  O 0 1 N N N 32.434 3.425  13.151 -0.261 -2.773 -1.304 O17  JNX 23 
JNX O20  O5  O 0 1 N N N 34.009 2.726  15.409 -1.915 -3.905 0.363  O20  JNX 24 
JNX O21  O6  O 0 1 N N N 32.290 1.472  16.121 -2.763 -2.072 1.261  O21  JNX 25 
JNX O26  O7  O 0 1 N N N 29.158 5.852  19.497 4.878  0.798  0.021  O26  JNX 26 
JNX O29  O8  O 0 1 N N N 27.742 7.412  18.646 5.913  2.234  1.359  O29  JNX 27 
JNX S15  S1  S 0 1 Y N N 28.267 0.001  15.658 -5.637 1.670  0.116  S15  JNX 28 
JNX S22  S2  S 0 1 N N N 29.467 4.192  15.844 1.049  -2.368 1.366  S22  JNX 29 
JNX H101 H1  H 0 0 N N N 28.560 0.857  11.949 -3.967 0.486  -2.048 H101 JNX 30 
JNX H102 H2  H 0 0 N N N 27.500 1.588  13.201 -2.572 1.591  -2.027 H102 JNX 31 
JNX H121 H3  H 0 0 N N N 29.801 -1.538 12.757 -2.546 3.454  -0.236 H121 JNX 32 
JNX H131 H4  H 0 0 N N N 29.895 -3.137 14.871 -4.144 4.710  1.296  H131 JNX 33 
JNX H141 H5  H 0 0 N N N 28.823 -2.099 17.007 -6.379 3.559  1.643  H141 JNX 34 
JNX H061 H7  H 0 0 N N N 30.788 5.033  14.056 -0.516 -0.541 1.187  H061 JNX 35 
JNX H181 H8  H 0 0 N N N 33.504 2.765  11.487 -0.476 -4.036 -2.925 H181 JNX 36 
JNX H182 H9  H 0 0 N N N 33.737 1.805  12.988 -1.763 -4.136 -1.699 H182 JNX 37 
JNX H183 H10 H 0 0 N N N 32.206 1.664  12.059 -1.687 -2.738 -2.798 H183 JNX 38 
JNX H231 H11 H 0 0 N N N 30.446 2.646  17.291 3.132  -1.911 2.506  H231 JNX 39 
JNX H232 H12 H 0 0 N N N 29.071 3.523  18.044 2.028  -0.512 2.569  H232 JNX 40 
JNX H241 H13 H 0 0 N N N 31.395 4.178  18.961 3.659  -1.504 0.197  H241 JNX 41 
JNX H251 H14 H 0 0 N N N 31.006 6.686  18.822 3.513  1.225  1.539  H251 JNX 42 
JNX H252 H15 H 0 0 N N N 29.787 6.409  17.532 4.725  -0.017 1.935  H252 JNX 43 
JNX H081 H18 H 0 0 N N N 30.800 1.124  14.450 -1.691 -0.951 -2.185 H081 JNX 44 
JNX H282 H19 H 0 0 N N N 25.824 5.733  19.051 6.473  1.822  -1.650 H282 JNX 45 
JNX H281 H20 H 0 0 N N N 26.851 4.510  19.722 7.228  2.894  -0.600 H281 JNX 46 
JNX H4   H21 H 0 1 N N N 35.064 6.578  17.598 3.026  2.740  -1.625 H4   JNX 47 
JNX H5   H22 H 0 1 N N N 32.954 1.107  16.694 -3.352 -2.629 1.789  H5   JNX 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JNX C10 C11  SING N N 1  
JNX C10 C09  SING N N 2  
JNX C11 C12  DOUB Y N 3  
JNX C11 S15  SING Y N 4  
JNX C12 C13  SING Y N 5  
JNX C13 C14  DOUB Y N 6  
JNX C14 S15  SING Y N 7  
JNX C02 O01  DOUB N N 8  
JNX C02 O03  SING N N 9  
JNX C04 C24  SING N N 10 
JNX C04 N05  DOUB N N 11 
JNX C06 C07  SING N N 12 
JNX C06 N05  SING N N 13 
JNX C06 S22  SING N N 14 
JNX C07 C19  SING N N 15 
JNX C07 N08  SING N N 16 
JNX C07 O17  SING N N 17 
JNX C09 N08  SING N N 18 
JNX C09 O16  DOUB N N 19 
JNX C18 O17  SING N N 20 
JNX C19 O20  DOUB N N 21 
JNX C19 O21  SING N N 22 
JNX C23 C24  SING N N 23 
JNX C23 S22  SING N N 24 
JNX C24 C25  SING N N 25 
JNX C25 O26  SING N N 26 
JNX C27 N28  SING N N 27 
JNX C27 O26  SING N N 28 
JNX C27 O29  DOUB N N 29 
JNX C04 C02  SING N N 30 
JNX C10 H101 SING N N 31 
JNX C10 H102 SING N N 32 
JNX C12 H121 SING N N 33 
JNX C13 H131 SING N N 34 
JNX C14 H141 SING N N 35 
JNX C06 H061 SING N N 36 
JNX C18 H181 SING N N 37 
JNX C18 H182 SING N N 38 
JNX C18 H183 SING N N 39 
JNX C23 H231 SING N N 40 
JNX C23 H232 SING N N 41 
JNX C24 H241 SING N N 42 
JNX C25 H251 SING N N 43 
JNX C25 H252 SING N N 44 
JNX N08 H081 SING N N 45 
JNX N28 H282 SING N N 46 
JNX N28 H281 SING N N 47 
JNX O03 H4   SING N N 48 
JNX O21 H5   SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JNX InChI            InChI                1.06  "InChI=1S/C16H19N3O8S2/c1-26-16(14(23)24,19-10(20)5-9-3-2-4-28-9)13-18-11(12(21)22)8(7-29-13)6-27-15(17)25/h2-4,8,13H,5-7H2,1H3,(H2,17,25)(H,19,20)(H,21,22)(H,23,24)/t8-,13+,16+/m0/s1" 
JNX InChIKey         InChI                1.06  GMTLEACBDXZSEB-SGEDMPRTSA-N                                                                                                                                                              
JNX SMILES_CANONICAL CACTVS               3.385 "CO[C@](NC(=O)Cc1sccc1)([C@H]2SC[C@H](COC(N)=O)C(=N2)C(O)=O)C(O)=O"                                                                                                                      
JNX SMILES           CACTVS               3.385 "CO[C](NC(=O)Cc1sccc1)([CH]2SC[CH](COC(N)=O)C(=N2)C(O)=O)C(O)=O"                                                                                                                         
JNX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@]([C@@H]1N=C([C@H](CS1)COC(=O)N)C(=O)O)(C(=O)O)NC(=O)Cc2cccs2"                                                                                                                     
JNX SMILES           "OpenEye OEToolkits" 2.0.7 "COC(C1N=C(C(CS1)COC(=O)N)C(=O)O)(C(=O)O)NC(=O)Cc2cccs2"                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           JNX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},5~{S})-5-(aminocarbonyloxymethyl)-2-[(1~{S})-1-methoxy-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-5,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      JNX 
_pdbx_chem_comp_synonyms.name         "hydrolysed cefoxitin" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JNX "Create component"   2022-05-06 PDBE 
JNX "Other modification" 2022-05-09 PDBE 
JNX "Modify descriptor"  2022-08-22 RCSB 
JNX "Initial release"    2023-03-08 RCSB 
# 
