data_J3X
# 
_chem_comp.id                                    J3X 
_chem_comp.name                                  "4-((5-bromofuran-2-yl)methyl)-8-(2-chloroacetyl)-1-thia-4,8-diazaspiro[4.5]decan-3-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H16 Br Cl N2 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-04-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        407.710 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J3X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7EFX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J3X C1  C1  C  0 1 Y N N N N N -10.735 41.046 80.710 -2.743 -0.956 1.509  C1  J3X 1  
J3X C2  C2  C  0 1 Y N N N N N -9.409  41.192 81.080 -1.520 -0.518 1.160  C2  J3X 2  
J3X C3  C3  C  0 1 Y N N N N N -10.456 40.368 82.816 -2.963 0.935  0.373  C3  J3X 3  
J3X C4  C4  C  0 1 Y N N N N N -11.385 40.532 81.797 -3.674 -0.020 1.002  C4  J3X 4  
J3X C5  C5  C  0 1 N N N N N N -8.258  41.709 80.244 -0.215 -1.199 1.485  C5  J3X 5  
J3X C6  C6  C  0 1 N N N N N N -6.749  39.590 80.043 -0.450 -3.442 0.569  C6  J3X 6  
J3X N1  N1  N  0 1 N N N N N N -7.023  40.948 80.503 0.068  -2.221 0.475  N1  J3X 7  
J3X S1  S1  S  0 1 N N N N N N -4.481  40.396 81.230 0.562  -3.295 -1.842 S1  J3X 8  
J3X C7  C7  C  0 1 N N N N N N -5.365  39.080 80.390 -0.086 -4.415 -0.536 C7  J3X 9  
J3X C8  C8  C  0 1 N N N N N N -5.885  41.558 81.194 0.929  -1.932 -0.673 C8  J3X 10 
J3X C9  C9  C  0 1 N N N N N N -5.060  42.519 80.328 0.567  -0.596 -1.310 C9  J3X 11 
J3X O1  O1  O  0 1 Y N N N N N -9.245  40.781 82.361 -1.659 0.627  0.472  O1  J3X 12 
J3X C10 C10 C  0 1 N N N N N N -4.703  43.862 80.932 0.846  0.535  -0.314 C10 J3X 13 
J3X O2  O2  O  0 1 N N N N N N -7.512  38.926 79.460 -1.170 -3.762 1.491  O2  J3X 14 
J3X C11 C11 C  0 1 N N N N N N -4.828  42.657 83.237 2.692  -0.850 0.722  C11 J3X 15 
J3X C12 C12 C  0 1 N N N N N N -6.072  42.020 82.645 2.400  -1.974 -0.280 C12 J3X 16 
J3X C13 C13 C  0 1 N N N N N N -3.971  45.049 82.962 3.079  1.470  0.049  C13 J3X 17 
J3X C14 C14 C  0 1 N N N N N N -3.673  45.192 84.462 4.502  1.341  0.528  C14 J3X 18 
J3X O3  O3  O  0 1 N N N N N N -3.752  45.932 82.208 2.691  2.517  -0.426 O3  J3X 19 
J3X N2  N2  N  0 1 N N N N N N -4.503  43.825 82.390 2.236  0.423  0.149  N2  J3X 20 
J3X BR1 BR1 BR 0 0 N N N N N N -10.714 39.682 84.616 -3.678 2.451  -0.503 BR1 J3X 21 
J3X H1  H1  H  0 1 N N N N N N -11.170 41.290 79.752 -2.971 -1.853 2.066  H1  J3X 22 
J3X H2  H2  H  0 1 N N N N N N -12.437 40.295 81.853 -4.748 -0.062 1.101  H2  J3X 23 
J3X H3  H3  H  0 1 N N N N N N -8.519  41.617 79.179 0.587  -0.461 1.490  H3  J3X 24 
J3X H4  H4  H  0 1 N N N N N N -8.085  42.767 80.489 -0.285 -1.667 2.467  H4  J3X 25 
J3X H5  H5  H  0 1 N N N N N N -5.445  38.204 81.050 0.685  -5.109 -0.203 H5  J3X 26 
J3X H6  H6  H  0 1 N N N N N N -4.830  38.799 79.471 -0.968 -4.951 -0.887 H6  J3X 27 
J3X H7  H7  H  0 1 N N N N N N -4.119  42.010 80.073 1.166  -0.447 -2.208 H7  J3X 28 
J3X H8  H8  H  0 1 N N N N N N -3.773  44.216 80.464 0.701  1.498  -0.805 H8  J3X 29 
J3X H9  H9  H  0 1 N N N N N N -5.517  44.568 80.712 0.170  0.450  0.536  H9  J3X 30 
J3X H10 H10 H  0 1 N N N N N N -5.023  42.981 84.270 2.159  -1.044 1.653  H10 J3X 31 
J3X H11 H11 H  0 1 N N N N N N -3.994  41.939 83.229 3.764  -0.802 0.915  H11 J3X 32 
J3X H12 H12 H  0 1 N N N N N N -6.889  42.756 82.675 2.627  -2.937 0.177  H12 J3X 33 
J3X H13 H13 H  0 1 N N N N N N -6.342  41.147 83.257 3.018  -1.838 -1.168 H13 J3X 34 
J3X H14 H14 H  0 1 N N N N N N -2.934  44.435 84.764 4.507  1.099  1.591  H14 J3X 35 
J3X H15 H15 H  0 1 N N N N N N -3.272  46.196 84.664 5.001  0.547  -0.028 H15 J3X 36 
J3X CL1 CL1 CL 0 0 N N N N N N -4.578  45.050 85.015 5.369  2.899  0.262  CL1 J3X 37 
J3X H17 H17 H  0 1 N N N N N N -5.633  42.711 79.409 -0.491 -0.595 -1.574 H17 J3X 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J3X C1  C2  DOUB Y N 1  
J3X C1  C4  SING Y N 2  
J3X C2  C5  SING N N 3  
J3X C2  O1  SING Y N 4  
J3X C3  C4  DOUB Y N 5  
J3X C3  O1  SING Y N 6  
J3X C3  BR1 SING N N 7  
J3X C5  N1  SING N N 8  
J3X C6  N1  SING N N 9  
J3X C6  C7  SING N N 10 
J3X C6  O2  DOUB N N 11 
J3X N1  C8  SING N N 12 
J3X S1  C7  SING N N 13 
J3X S1  C8  SING N N 14 
J3X C8  C9  SING N N 15 
J3X C8  C12 SING N N 16 
J3X C9  C10 SING N N 17 
J3X C10 N2  SING N N 18 
J3X C11 C12 SING N N 19 
J3X C11 N2  SING N N 20 
J3X C13 C14 SING N N 21 
J3X C13 O3  DOUB N N 22 
J3X C13 N2  SING N N 23 
J3X C1  H1  SING N N 24 
J3X C4  H2  SING N N 25 
J3X C5  H3  SING N N 26 
J3X C5  H4  SING N N 27 
J3X C7  H5  SING N N 28 
J3X C7  H6  SING N N 29 
J3X C9  H7  SING N N 30 
J3X C10 H8  SING N N 31 
J3X C10 H9  SING N N 32 
J3X C11 H10 SING N N 33 
J3X C11 H11 SING N N 34 
J3X C12 H12 SING N N 35 
J3X C12 H13 SING N N 36 
J3X C14 H14 SING N N 37 
J3X C14 H15 SING N N 38 
J3X C14 CL1 SING N N 39 
J3X C9  H17 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J3X InChI            InChI                1.03  "InChI=1S/C14H16BrClN2O3S/c15-11-2-1-10(21-11)8-18-13(20)9-22-14(18)3-5-17(6-4-14)12(19)7-16/h1-2H,3-9H2" 
J3X InChIKey         InChI                1.03  BECZFXLAINPVEW-UHFFFAOYSA-N                                                                               
J3X SMILES_CANONICAL CACTVS               3.385 "ClCC(=O)N1CCC2(CC1)SCC(=O)N2Cc3oc(Br)cc3"                                                                
J3X SMILES           CACTVS               3.385 "ClCC(=O)N1CCC2(CC1)SCC(=O)N2Cc3oc(Br)cc3"                                                                
J3X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(oc1CN2C(=O)CSC23CCN(CC3)C(=O)CCl)Br"                                                                
J3X SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(oc1CN2C(=O)CSC23CCN(CC3)C(=O)CCl)Br"                                                                
# 
_pdbx_chem_comp_identifier.comp_id           J3X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[(5-bromanylfuran-2-yl)methyl]-8-(2-chloranylethanoyl)-1-thia-4,8-diazaspiro[4.5]decan-3-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J3X "Create component" 2021-04-02 PDBJ 
J3X "Modify name"      2021-04-06 PDBJ 
J3X "Initial release"  2022-02-16 RCSB 
J3X "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            J3X 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
