data_I9X
# 
_chem_comp.id                                    I9X 
_chem_comp.name                                  alpha-D-ribose-1,2-cyclic-phosphate-5-phosphate 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H10 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[(3aR,5R,6R,6aR)-2,6-bis(oxidanyl)-2-oxidanylidene-3a,5,6,6a-tetrahydrofuro[2,3-d][1,3,2]dioxaphosphol-5-yl]methyl dihydrogen phosphate; 5-phospho-alpha-D-ribose cyclic-1,2-phosphate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-03 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        292.074 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I9X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Z18 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I9X O15  O1  O 0 1 N N N 163.062 163.076 185.727 -4.613 1.434  -1.075 O15  I9X 1  
I9X P08  P1  P 0 1 N N N 167.278 157.498 182.164 3.500  0.603  -0.245 P08  I9X 2  
I9X P14  P2  P 0 1 N N N 162.839 162.474 184.362 -3.996 0.313  -0.097 P14  I9X 3  
I9X C01  C1  C 0 1 N N N 163.586 160.333 183.065 -1.594 -0.795 0.280  C01  I9X 4  
I9X C02  C2  C 0 1 N N R 164.739 159.552 182.785 -0.146 -0.636 -0.190 C02  I9X 5  
I9X C03  C3  C 0 1 N N R 165.284 158.708 184.189 0.721  -1.770 0.396  C03  I9X 6  
I9X C04  C4  C 0 1 N N R 166.461 158.476 184.004 2.044  -1.037 0.747  C04  I9X 7  
I9X C05  C5  C 0 1 N N R 166.998 159.690 182.920 1.513  0.370  1.135  C05  I9X 8  
I9X O06  O2  O 0 1 N N N 165.766 160.357 182.414 0.385  0.606  0.285  O06  I9X 9  
I9X O07  O3  O 0 1 N N N 167.596 159.114 182.034 2.559  1.319  0.869  O07  I9X 10 
I9X O09  O4  O 0 1 N N N 166.416 157.086 181.064 3.501  1.382  -1.503 O09  I9X 11 
I9X O10  O5  O 0 1 N N N 166.680 157.212 183.319 2.800  -0.850 -0.474 O10  I9X 12 
I9X O11  O6  O 0 1 N N N 168.702 156.677 182.079 5.000  0.425  0.312  O11  I9X 13 
I9X O12  O7  O 0 1 N N N 164.534 157.459 184.339 0.950  -2.789 -0.578 O12  I9X 14 
I9X O13  O8  O 0 1 N N N 163.834 161.177 184.152 -2.412 0.187  -0.359 O13  I9X 15 
I9X O16  O9  O 0 1 N N N 161.403 162.035 184.241 -4.255 0.735  1.434  O16  I9X 16 
I9X O17  O10 O 0 1 N N N 163.130 163.511 183.307 -4.645 -0.989 -0.367 O17  I9X 17 
I9X H1   H1  H 0 1 N N N 163.338 163.980 185.634 -5.566 1.564  -0.972 H1   I9X 18 
I9X H012 H2  H 0 0 N N N 163.333 160.939 182.183 -1.953 -1.791 0.021  H012 I9X 19 
I9X H011 H3  H 0 0 N N N 162.744 159.667 183.305 -1.642 -0.661 1.360  H011 I9X 20 
I9X H021 H4  H 0 0 N N N 164.519 158.793 182.020 -0.106 -0.665 -1.279 H021 I9X 21 
I9X H031 H5  H 0 0 N N N 165.086 159.365 185.048 0.259  -2.188 1.291  H031 I9X 22 
I9X H041 H6  H 0 0 N N N 167.090 158.540 184.904 2.614  -1.522 1.538  H041 I9X 23 
I9X H051 H7  H 0 0 N N N 167.603 160.403 183.499 1.220  0.399  2.185  H051 I9X 24 
I9X H111 H8  H 0 0 N N N 168.687 156.093 181.330 5.464  1.259  0.466  H111 I9X 25 
I9X H121 H9  H 0 0 N N N 164.837 156.998 185.112 0.143  -3.222 -0.892 H121 I9X 26 
I9X H2   H10 H 0 1 N N N 160.987 162.504 183.527 -3.857 1.581  1.682  H2   I9X 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I9X O09 P08  DOUB N N 1  
I9X O07 P08  SING N N 2  
I9X O07 C05  SING N N 3  
I9X O11 P08  SING N N 4  
I9X P08 O10  SING N N 5  
I9X O06 C02  SING N N 6  
I9X O06 C05  SING N N 7  
I9X C02 C01  SING N N 8  
I9X C02 C03  SING N N 9  
I9X C05 C04  SING N N 10 
I9X C01 O13  SING N N 11 
I9X O17 P14  DOUB N N 12 
I9X O10 C04  SING N N 13 
I9X C04 C03  SING N N 14 
I9X O13 P14  SING N N 15 
I9X C03 O12  SING N N 16 
I9X O16 P14  SING N N 17 
I9X P14 O15  SING N N 18 
I9X O15 H1   SING N N 19 
I9X C01 H012 SING N N 20 
I9X C01 H011 SING N N 21 
I9X C02 H021 SING N N 22 
I9X C03 H031 SING N N 23 
I9X C04 H041 SING N N 24 
I9X C05 H051 SING N N 25 
I9X O11 H111 SING N N 26 
I9X O12 H121 SING N N 27 
I9X O16 H2   SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I9X InChI            InChI                1.06  "InChI=1S/C5H10O10P2/c6-3-2(1-12-16(7,8)9)13-5-4(3)14-17(10,11)15-5/h2-6H,1H2,(H,10,11)(H2,7,8,9)/t2-,3-,4-,5-/m1/s1" 
I9X InChIKey         InChI                1.06  OXGUIUWFXGIWNM-TXICZTDVSA-N                                                                                           
I9X SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1[C@@H](CO[P](O)(O)=O)O[C@@H]2O[P](O)(=O)O[C@H]12"                                                            
I9X SMILES           CACTVS               3.385 "O[CH]1[CH](CO[P](O)(O)=O)O[CH]2O[P](O)(=O)O[CH]12"                                                                   
I9X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]2[C@H](O1)OP(=O)(O2)O)O)OP(=O)(O)O"                                                             
I9X SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C2C(O1)OP(=O)(O2)O)O)OP(=O)(O)O"                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           I9X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(3~{a}~{R},5~{R},6~{R},6~{a}~{R})-2,6-bis(oxidanyl)-2-oxidanylidene-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3,2]dioxaphosphol-5-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 I9X "[(3aR,5R,6R,6aR)-2,6-bis(oxidanyl)-2-oxidanylidene-3a,5,6,6a-tetrahydrofuro[2,3-d][1,3,2]dioxaphosphol-5-yl]methyl dihydrogen phosphate" PDB     ? 
2 I9X "5-phospho-alpha-D-ribose cyclic-1,2-phosphate"                                                                                           PUBCHEM ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I9X "Create component"   2022-03-03 PDBE 
I9X "Initial release"    2022-05-25 RCSB 
I9X "Modify coordinates" 2022-05-30 PDBE 
I9X "Modify name"        2022-06-16 PDBE 
I9X "Modify descriptor"  2022-08-22 RCSB 
# 
