data_I5X
# 
_chem_comp.id                                    I5X 
_chem_comp.name                                  "~{N}-[(1~{S})-1-(1~{H}-benzimidazol-2-yl)-3-methylsulfanyl-propyl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H28 N4 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-10 
_chem_comp.pdbx_modified_date                    2023-03-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        424.559 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I5X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7XUA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I5X C10 C1  C 0 1 N N S -6.713  7.927  49.416 -2.191 -0.841 -0.524 C10 I5X 1  
I5X C13 C2  C 0 1 Y N N -3.022  8.385  50.271 1.530  -0.117 -0.599 C13 I5X 2  
I5X C14 C3  C 0 1 Y N N -2.619  7.181  51.094 2.726  -0.546 -1.104 C14 I5X 3  
I5X C21 C4  C 0 1 N N N -0.149  6.762  52.141 5.158  0.364  -0.841 C21 I5X 4  
I5X C27 C5  C 0 1 N N N -3.405  5.974  51.551 2.949  -1.734 -2.004 C27 I5X 5  
I5X C29 C6  C 0 1 N N N 1.667   7.645  49.529 6.058  3.224  1.540  C29 I5X 6  
I5X C30 C7  C 0 1 N N N 2.845   9.070  51.163 5.426  0.846  1.956  C30 I5X 7  
I5X C1  C8  C 0 1 Y N N -9.389  11.478 51.613 -4.736 3.411  0.222  C1  I5X 8  
I5X C12 C9  C 0 1 N N N -4.393  8.579  49.711 0.223  -0.740 -0.841 C12 I5X 9  
I5X C15 C10 C 0 1 Y N N -1.200  7.477  51.378 3.703  0.334  -0.623 C15 I5X 10 
I5X C16 C11 C 0 1 Y N N -0.918  8.745  50.738 3.063  1.283  0.174  C16 I5X 11 
I5X C18 C12 C 0 1 N N N 0.424   9.348  50.792 3.800  2.398  0.871  C18 I5X 12 
I5X C19 C13 C 0 1 N N N 1.541   8.331  50.883 5.281  2.026  0.992  C19 I5X 13 
I5X C2  C14 C 0 1 Y N N -9.697  12.784 51.235 -6.086 3.688  0.262  C2  I5X 14 
I5X C20 C15 C 0 1 N N N 1.278   7.282  51.988 5.854  1.634  -0.373 C20 I5X 15 
I5X C22 C16 C 0 1 N N N -7.637  6.806  49.874 -2.404 -1.982 0.472  C22 I5X 16 
I5X C23 C17 C 0 1 N N N -7.358  5.480  49.179 -1.375 -3.084 0.213  C23 I5X 17 
I5X C25 C18 C 0 1 N N N -9.175  5.190  46.992 -0.336 -5.626 0.935  C25 I5X 18 
I5X C3  C19 C 0 1 Y N N -9.227  13.328 50.035 -7.017 2.677  0.071  C3  I5X 19 
I5X C4  C20 C 0 1 Y N N -8.430  12.589 49.161 -6.614 1.393  -0.160 C4  I5X 20 
I5X C5  C21 C 0 1 Y N N -8.099  11.280 49.497 -5.251 1.088  -0.204 C5  I5X 21 
I5X C6  C22 C 0 1 Y N N -8.597  10.703 50.770 -4.308 2.112  -0.016 C6  I5X 22 
I5X C8  C23 C 0 1 Y N N -7.384  9.215  49.719 -3.278 0.188  -0.350 C8  I5X 23 
I5X N11 N1  N 0 1 N N N -5.424  7.823  50.085 -0.887 -0.218 -0.283 N11 I5X 24 
I5X N17 N2  N 0 1 Y N N -1.977  9.243  50.089 1.760  1.000  0.182  N17 I5X 25 
I5X N7  N3  N 0 1 Y N N -8.126  9.451  50.824 -3.069 1.511  -0.114 N7  I5X 26 
I5X N9  N4  N 0 1 Y N N -7.372  10.308 48.906 -4.554 -0.059 -0.407 N9  I5X 27 
I5X O26 O1  O 0 1 N N N -4.536  9.475  48.893 0.142  -1.729 -1.546 O26 I5X 28 
I5X O28 O2  O 0 1 N N N -0.426  5.836  52.892 5.758  -0.555 -1.355 O28 I5X 29 
I5X S24 S1  S 0 1 N N N -7.529  5.641  47.431 -1.627 -4.437 1.394  S24 I5X 30 
I5X H1  H1  H 0 1 N N N -6.570  7.842  48.329 -2.223 -1.235 -1.540 H1  I5X 31 
I5X H2  H2  H 0 1 N N N -3.323  5.176  50.799 2.869  -1.421 -3.045 H2  I5X 32 
I5X H3  H3  H 0 1 N N N -3.003  5.616  52.510 3.942  -2.145 -1.823 H3  I5X 33 
I5X H4  H4  H 0 1 N N N -4.462  6.251  51.677 2.197  -2.494 -1.795 H4  I5X 34 
I5X H5  H5  H 0 1 N N N 2.474   6.899  49.569 5.668  3.492  2.522  H5  I5X 35 
I5X H6  H6  H 0 1 N N N 0.719   7.146  49.281 7.113  2.963  1.628  H6  I5X 36 
I5X H7  H7  H 0 1 N N N 1.899   8.395  48.758 5.949  4.069  0.862  H7  I5X 37 
I5X H8  H8  H 0 1 N N N 2.779   9.575  52.138 5.029  1.124  2.932  H8  I5X 38 
I5X H9  H9  H 0 1 N N N 3.678   8.351  51.178 4.873  -0.009 1.569  H9  I5X 39 
I5X H10 H10 H 0 1 N N N 3.020   9.817  50.375 6.480  0.585  2.053  H10 I5X 40 
I5X H11 H11 H 0 1 N N N -9.758  11.074 52.544 -4.016 4.201  0.372  H11 I5X 41 
I5X H12 H12 H 0 1 N N N 0.573   9.948  49.882 3.702  3.317  0.292  H12 I5X 42 
I5X H13 H13 H 0 1 N N N 0.476   10.002 51.675 3.380  2.547  1.865  H13 I5X 43 
I5X H14 H14 H 0 1 N N N -10.313 13.390 51.884 -6.421 4.699  0.442  H14 I5X 44 
I5X H15 H15 H 0 1 N N N 1.924   6.416  51.781 6.925  1.453  -0.283 H15 I5X 45 
I5X H16 H16 H 0 1 N N N 1.568   7.734  52.948 5.676  2.436  -1.090 H16 I5X 46 
I5X H17 H17 H 0 1 N N N -8.676  7.100  49.663 -2.283 -1.605 1.488  H17 I5X 47 
I5X H18 H18 H 0 1 N N N -7.508  6.667  50.958 -3.408 -2.387 0.352  H18 I5X 48 
I5X H19 H19 H 0 1 N N N -8.070  4.725  49.543 -1.495 -3.461 -0.803 H19 I5X 49 
I5X H20 H20 H 0 1 N N N -6.332  5.159  49.413 -0.370 -2.679 0.333  H20 I5X 50 
I5X H21 H21 H 0 1 N N N -9.303  5.284  45.904 -0.393 -6.496 1.590  H21 I5X 51 
I5X H22 H22 H 0 1 N N N -9.363  4.150  47.295 -0.482 -5.940 -0.099 H22 I5X 52 
I5X H23 H23 H 0 1 N N N -9.886  5.855  47.503 0.642  -5.158 1.037  H23 I5X 53 
I5X H24 H24 H 0 1 N N N -9.487  14.344 49.779 -8.072 2.909  0.105  H24 I5X 54 
I5X H25 H25 H 0 1 N N N -8.076  13.025 48.239 -7.348 0.613  -0.303 H25 I5X 55 
I5X H26 H26 H 0 1 N N N -5.311  7.174  50.837 -0.822 0.570  0.279  H26 I5X 56 
I5X H27 H27 H 0 1 N N N -1.999  10.094 49.564 1.079  1.502  0.657  H27 I5X 57 
I5X H28 H28 H 0 1 N N N -8.295  8.797  51.561 -2.208 1.951  -0.030 H28 I5X 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I5X C25 S24 SING N N 1  
I5X S24 C23 SING N N 2  
I5X O26 C12 DOUB N N 3  
I5X N9  C5  SING Y N 4  
I5X N9  C8  DOUB Y N 5  
I5X C4  C5  SING Y N 6  
I5X C4  C3  DOUB Y N 7  
I5X C23 C22 SING N N 8  
I5X C10 C8  SING N N 9  
I5X C10 C22 SING N N 10 
I5X C10 N11 SING N N 11 
I5X C5  C6  DOUB Y N 12 
I5X C29 C19 SING N N 13 
I5X C12 N11 SING N N 14 
I5X C12 C13 SING N N 15 
I5X C8  N7  SING Y N 16 
I5X C3  C2  SING Y N 17 
I5X N17 C13 SING Y N 18 
I5X N17 C16 SING Y N 19 
I5X C13 C14 DOUB Y N 20 
I5X C16 C18 SING N N 21 
I5X C16 C15 DOUB Y N 22 
I5X C6  N7  SING Y N 23 
I5X C6  C1  SING Y N 24 
I5X C18 C19 SING N N 25 
I5X C19 C30 SING N N 26 
I5X C19 C20 SING N N 27 
I5X C14 C15 SING Y N 28 
I5X C14 C27 SING N N 29 
I5X C2  C1  DOUB Y N 30 
I5X C15 C21 SING N N 31 
I5X C20 C21 SING N N 32 
I5X C21 O28 DOUB N N 33 
I5X C10 H1  SING N N 34 
I5X C27 H2  SING N N 35 
I5X C27 H3  SING N N 36 
I5X C27 H4  SING N N 37 
I5X C29 H5  SING N N 38 
I5X C29 H6  SING N N 39 
I5X C29 H7  SING N N 40 
I5X C30 H8  SING N N 41 
I5X C30 H9  SING N N 42 
I5X C30 H10 SING N N 43 
I5X C1  H11 SING N N 44 
I5X C18 H12 SING N N 45 
I5X C18 H13 SING N N 46 
I5X C2  H14 SING N N 47 
I5X C20 H15 SING N N 48 
I5X C20 H16 SING N N 49 
I5X C22 H17 SING N N 50 
I5X C22 H18 SING N N 51 
I5X C23 H19 SING N N 52 
I5X C23 H20 SING N N 53 
I5X C25 H21 SING N N 54 
I5X C25 H22 SING N N 55 
I5X C25 H23 SING N N 56 
I5X C3  H24 SING N N 57 
I5X C4  H25 SING N N 58 
I5X N11 H26 SING N N 59 
I5X N17 H27 SING N N 60 
I5X N7  H28 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I5X InChI            InChI                1.03  "InChI=1S/C23H28N4O2S/c1-13-19-17(11-23(2,3)12-18(19)28)24-20(13)22(29)27-16(9-10-30-4)21-25-14-7-5-6-8-15(14)26-21/h5-8,16,24H,9-12H2,1-4H3,(H,25,26)(H,27,29)/t16-/m0/s1" 
I5X InChIKey         InChI                1.03  MANBWNSTKHJLJI-INIZCTEOSA-N                                                                                                                                                 
I5X SMILES_CANONICAL CACTVS               3.385 "CSCC[C@H](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)c3[nH]c4ccccc4n3"                                                                                                              
I5X SMILES           CACTVS               3.385 "CSCC[CH](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)c3[nH]c4ccccc4n3"                                                                                                               
I5X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c2c([nH]c1C(=O)N[C@@H](CCSC)c3[nH]c4ccccc4n3)CC(CC2=O)(C)C"                                                                                                             
I5X SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c2c([nH]c1C(=O)NC(CCSC)c3[nH]c4ccccc4n3)CC(CC2=O)(C)C"                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           I5X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(1~{S})-1-(1~{H}-benzimidazol-2-yl)-3-methylsulfanyl-propyl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I5X "Create component" 2022-06-10 PDBJ 
I5X "Initial release"  2023-03-29 RCSB 
# 
