data_E7X
#

_chem_comp.id                                   E7X
_chem_comp.name                                 "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-hydroxyethyl)amino]-2-azaniumyl-butanoate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H25 N7 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-11-14
_chem_comp.pdbx_modified_date                   2019-12-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       411.413
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    E7X
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6LAZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
E7X  C2     C1   C   0  1  Y  N  N   7.794   -9.193  54.268   5.322  -0.783   2.162  C2     E7X   1  
E7X  C5     C2   C   0  1  Y  N  N  10.014   -7.718  54.476   4.492  -1.200  -0.356  C5     E7X   2  
E7X  C6     C3   C   0  1  Y  N  N  10.089   -9.037  54.027   5.713  -1.731   0.094  C6     E7X   3  
E7X  C8     C4   C   0  1  Y  N  N  10.327   -5.695  55.111   2.708  -0.559  -1.408  C8     E7X   4  
E7X  N      N1   N   1  1  N  N  N  12.565   -1.632  53.773  -4.489  -0.256   2.485  N      E7X   5  
E7X  CA     C5   C   0  1  N  N  S  11.247   -1.084  53.686  -5.223  -0.437   1.226  CA     E7X   6  
E7X  C      C6   C   0  1  N  N  N  11.231   -0.119  52.451  -6.058  -1.689   1.307  C      E7X   7  
E7X  O      O1   O  -1  1  N  N  N  10.736    1.049  52.569  -6.883  -1.928   0.441  O      E7X   8  
E7X  CB     C7   C   0  1  N  N  N  10.852   -0.319  54.983  -4.229  -0.562   0.069  CB     E7X   9  
E7X  CG     C8   C   0  1  N  N  N   9.436   -0.653  55.593  -3.467   0.755  -0.092  CG     E7X  10  
E7X  CE     C9   C   0  1  N  N  N   9.219    0.499  57.751  -3.212   0.478  -2.484  CE     E7X  11  
E7X  "C5'"  C10  C   0  1  N  N  N   8.465   -1.759  57.679  -1.600   1.787  -1.238  "C5'"  E7X  12  
E7X  "C4'"  C11  C   0  1  N  N  R   7.952   -2.978  56.888  -0.553   1.644  -0.132  "C4'"  E7X  13  
E7X  "O4'"  O2   O   0  1  N  N  N   8.722   -3.487  55.970   0.291   0.499  -0.384  "O4'"  E7X  14  
E7X  "C3'"  C12  C   0  1  N  N  S   7.826   -4.221  57.828   0.408   2.853  -0.141  "C3'"  E7X  15  
E7X  "O3'"  O3   O   0  1  N  N  N   6.894   -4.017  58.827   0.020   3.809   0.848  "O3'"  E7X  16  
E7X  "C2'"  C13  C   0  1  N  N  R   7.426   -5.278  56.821   1.784   2.242   0.206  "C2'"  E7X  17  
E7X  "O2'"  O4   O   0  1  N  N  N   5.950   -5.229  56.589   2.289   2.803   1.419  "O2'"  E7X  18  
E7X  "C1'"  C14  C   0  1  N  N  R   8.042   -4.922  55.676   1.491   0.735   0.384  "C1'"  E7X  19  
E7X  OXT    O5   O   0  1  N  N  N  11.729   -0.507  51.325  -5.909  -2.462   2.237  OXT    E7X  20  
E7X  C01    C15  C   0  1  N  N  N  10.509    1.262  58.030  -2.236  -0.049  -3.537  C01    E7X  21  
E7X  N01    N2   N   0  1  N  N  N   9.477   -0.816  57.076  -2.512   0.636  -1.202  N01    E7X  22  
E7X  N1     N3   N   0  1  Y  N  N   8.960   -9.730  53.939   6.083  -1.492   1.348  N1     E7X  23  
E7X  O01    O6   O   0  1  N  N  N  10.946    1.989  57.177  -1.816  -1.367  -3.180  O01    E7X  24  
E7X  N3     N4   N   0  1  Y  N  N   7.693   -7.956  54.700   4.168  -0.275   1.787  N3     E7X  25  
E7X  C4     C16  C   0  1  Y  N  N   8.790   -7.175  54.822   3.718  -0.456   0.549  C4     E7X  26  
E7X  N6     N5   N   0  1  N  N  N  11.405   -9.632  53.652   6.513  -2.482  -0.749  N6     E7X  27  
E7X  N7     N6   N   0  1  Y  N  N  10.931   -6.779  54.666   3.814  -1.233  -1.529  N7     E7X  28  
E7X  N9     N7   N   0  1  Y  N  N   9.022   -5.915  55.218   2.599  -0.065  -0.142  N9     E7X  29  
E7X  H1     H1   H   0  1  N  N  N   6.899   -9.791  54.178   5.659  -0.617   3.175  H1     E7X  30  
E7X  H2     H2   H   0  1  N  N  N  10.821   -4.765  55.353   1.979  -0.418  -2.192  H2     E7X  31  
E7X  H3     H3   H   0  1  N  N  N  12.616   -2.256  54.553  -3.929   0.582   2.431  H3     E7X  32  
E7X  H4     H4   H   0  1  N  N  N  12.774   -2.131  52.932  -5.144  -0.174   3.248  H4     E7X  33  
E7X  H6     H6   H   0  1  N  N  N  10.512   -1.884  53.513  -5.871   0.422   1.056  H6     E7X  34  
E7X  H8     H8   H   0  1  N  N  N  11.608   -0.547  55.749  -3.524  -1.366   0.281  H8     E7X  35  
E7X  H9     H9   H   0  1  N  N  N  10.873    0.757  54.756  -4.768  -0.784  -0.851  H9     E7X  36  
E7X  H10    H10  H   0  1  N  N  N   8.744    0.166  55.347  -4.172   1.559  -0.304  H10    E7X  37  
E7X  H11    H11  H   0  1  N  N  N   9.071   -1.589  55.145  -2.927   0.978   0.829  H11    E7X  38  
E7X  H12    H12  H   0  1  N  N  N   8.578    1.112  57.101  -3.606   1.443  -2.804  H12    E7X  39  
E7X  H13    H13  H   0  1  N  N  N   8.703    0.313  58.705  -4.034  -0.228  -2.364  H13    E7X  40  
E7X  H14    H14  H   0  1  N  N  N   7.582   -1.153  57.929  -2.168   2.705  -1.085  H14    E7X  41  
E7X  H15    H15  H   0  1  N  N  N   8.914   -2.151  58.603  -1.102   1.825  -2.207  H15    E7X  42  
E7X  H16    H16  H   0  1  N  N  N   6.951   -2.742  56.499  -1.039   1.553   0.840  H16    E7X  43  
E7X  H17    H17  H   0  1  N  N  N   8.817   -4.460  58.241   0.431   3.315  -1.128  H17    E7X  44  
E7X  H18    H18  H   0  1  N  N  N   7.207   -3.345  59.421   0.590   4.589   0.886  H18    E7X  45  
E7X  H19    H19  H   0  1  N  N  N   7.727   -6.275  57.176   2.489   2.400  -0.610  H19    E7X  46  
E7X  H20    H20  H   0  1  N  N  N   5.495   -5.477  57.385   2.434   3.759   1.380  H20    E7X  47  
E7X  H21    H21  H   0  1  N  N  N   7.302   -4.766  54.877   1.320   0.504   1.436  H21    E7X  48  
E7X  H22    H22  H   0  1  N  N  N  11.286    0.515  58.248  -2.729  -0.075  -4.509  H22    E7X  49  
E7X  H24    H24  H   0  1  N  N  N  11.271  -10.575  53.348   6.233  -2.648  -1.663  H24    E7X  50  
E7X  H25    H25  H   0  1  N  N  N  11.813   -9.098  52.911   7.353  -2.843  -0.426  H25    E7X  51  
E7X  H7     H7   H   0  1  N  N  N  10.333    1.880  58.923  -1.367   0.608  -3.588  H7     E7X  52  
E7X  H23    H23  H   0  1  N  N  N  11.747    2.395  57.486  -1.194  -1.765  -3.805  H23    E7X  53  
E7X  H5     H5   H   0  1  N  N  N  13.226   -0.892  53.895  -3.888  -1.052   2.642  H5     E7X  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
E7X  OXT    C      DOUB  N  N   1  
E7X  C      O      SING  N  N   2  
E7X  C      CA     SING  N  N   3  
E7X  N6     C6     SING  N  N   4  
E7X  CA     N      SING  N  N   5  
E7X  CA     CB     SING  N  N   6  
E7X  N1     C6     DOUB  Y  N   7  
E7X  N1     C2     SING  Y  N   8  
E7X  C6     C5     SING  Y  N   9  
E7X  C2     N3     DOUB  Y  N  10  
E7X  C5     N7     SING  Y  N  11  
E7X  C5     C4     DOUB  Y  N  12  
E7X  N7     C8     DOUB  Y  N  13  
E7X  N3     C4     SING  Y  N  14  
E7X  C4     N9     SING  Y  N  15  
E7X  CB     CG     SING  N  N  16  
E7X  C8     N9     SING  Y  N  17  
E7X  N9     "C1'"  SING  N  N  18  
E7X  CG     N01    SING  N  N  19  
E7X  "C1'"  "O4'"  SING  N  N  20  
E7X  "C1'"  "C2'"  SING  N  N  21  
E7X  "O4'"  "C4'"  SING  N  N  22  
E7X  "O2'"  "C2'"  SING  N  N  23  
E7X  "C2'"  "C3'"  SING  N  N  24  
E7X  "C4'"  "C5'"  SING  N  N  25  
E7X  "C4'"  "C3'"  SING  N  N  26  
E7X  N01    "C5'"  SING  N  N  27  
E7X  N01    CE     SING  N  N  28  
E7X  O01    C01    SING  N  N  29  
E7X  CE     C01    SING  N  N  30  
E7X  "C3'"  "O3'"  SING  N  N  31  
E7X  C2     H1     SING  N  N  32  
E7X  C8     H2     SING  N  N  33  
E7X  N      H3     SING  N  N  34  
E7X  N      H4     SING  N  N  35  
E7X  CA     H6     SING  N  N  36  
E7X  CB     H8     SING  N  N  37  
E7X  CB     H9     SING  N  N  38  
E7X  CG     H10    SING  N  N  39  
E7X  CG     H11    SING  N  N  40  
E7X  CE     H12    SING  N  N  41  
E7X  CE     H13    SING  N  N  42  
E7X  "C5'"  H14    SING  N  N  43  
E7X  "C5'"  H15    SING  N  N  44  
E7X  "C4'"  H16    SING  N  N  45  
E7X  "C3'"  H17    SING  N  N  46  
E7X  "O3'"  H18    SING  N  N  47  
E7X  "C2'"  H19    SING  N  N  48  
E7X  "O2'"  H20    SING  N  N  49  
E7X  "C1'"  H21    SING  N  N  50  
E7X  C01    H22    SING  N  N  51  
E7X  N6     H24    SING  N  N  52  
E7X  N6     H25    SING  N  N  53  
E7X  C01    H7     SING  N  N  54  
E7X  O01    H23    SING  N  N  55  
E7X  N      H5     SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
E7X  InChI             InChI                 1.03   "InChI=1S/C16H25N7O6/c17-8(16(27)28)1-2-22(3-4-24)5-9-11(25)12(26)15(29-9)23-7-21-10-13(18)19-6-20-14(10)23/h6-9,11-12,15,24-26H,1-5,17H2,(H,27,28)(H2,18,19,20)/t8-,9+,11+,12+,15+/m0/s1"  
E7X  InChIKey          InChI                 1.03   OHBJWDDPDJOYBP-OPYVMVOTSA-N  
E7X  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN(CCO)CC[C@H]([NH3+])C([O-])=O)[C@@H](O)[C@H]3O"  
E7X  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CN(CCO)CC[CH]([NH3+])C([O-])=O)[CH](O)[CH]3O"  
E7X  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC[C@@H](C(=O)[O-])[NH3+])CCO)O)O)N"  
E7X  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCC(C(=O)[O-])[NH3+])CCO)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          E7X
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-hydroxyethyl)amino]-2-azaniumyl-butanoate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
E7X  "Create component"               2019-11-14  PDBJ  
E7X  "Modify model coordinates code"  2019-11-15  PDBJ  
E7X  "Modify model coordinates code"  2019-11-19  PDBJ  
E7X  "Initial release"                2020-01-01  RCSB  
##
