data_DDX
# 
_chem_comp.id                                    DDX 
_chem_comp.name                                  "2',3'-DEHYDRO-2',3'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C5 H9 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2002-08-22 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        196.095 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     DDX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DDX P      P    P 0 1 N N N 26.784 23.700 37.283 2.169 -2.756 -4.556 P      DDX 1  
DDX OP1    O1P  O 0 1 N N N 27.552 24.573 36.362 1.376 -2.050 -5.617 OP1    DDX 2  
DDX OP2    O2P  O 0 1 N N N 27.330 22.370 37.653 1.711 -4.275 -4.246 OP2    DDX 3  
DDX OP3    O3P  O 0 1 N Y N ?      ?      ?      3.750 -2.900 -4.867 OP3    DDX 4  
DDX "O5'"  O5*  O 0 1 N N N 25.309 23.495 36.706 2.151 -2.044 -3.102 "O5'"  DDX 5  
DDX "C5'"  C5*  C 0 1 N N N 24.730 24.508 35.959 2.876 -2.649 -2.044 "C5'"  DDX 6  
DDX "C4'"  C4*  C 0 1 N N S 23.186 24.474 36.096 2.710 -1.806 -0.791 "C4'"  DDX 7  
DDX "O4'"  O4*  O 0 1 N N N 22.621 23.906 34.918 3.163 -0.465 -1.072 "O4'"  DDX 8  
DDX "C1'"  C1*  C 0 1 N N S 21.916 22.706 35.247 2.131 0.458  -0.676 "C1'"  DDX 9  
DDX "C3'"  C3*  C 0 1 N N N 22.662 23.631 37.228 1.292 -1.668 -0.368 "C3'"  DDX 10 
DDX "C2'"  C2*  C 0 1 N N N 21.934 22.624 36.743 0.966 -0.380 -0.297 "C2'"  DDX 11 
DDX "O1'"  O1*  O 0 1 N N N 20.755 22.784 34.483 2.555 1.283  0.400  "O1'"  DDX 12 
DDX HOP2   2HOP H 0 0 N N N 26.838 21.810 38.242 1.580 -4.894 -4.996 HOP2   DDX 13 
DDX HOP3   3HOP H 0 0 N N N -0.491 -0.559 0.589  4.032 -3.227 -5.747 HOP3   DDX 14 
DDX "H5'"  1H5* H 0 1 N N N 25.146 25.507 36.224 2.489 -3.656 -1.877 "H5'"  DDX 15 
DDX "H5''" 2H5* H 0 0 N N N 25.051 24.470 34.892 3.931 -2.708 -2.324 "H5''" DDX 16 
DDX "H4'"  H4*  H 0 1 N N N 22.901 25.536 36.281 3.319 -2.210 0.024  "H4'"  DDX 17 
DDX "H1'"  H1*  H 0 1 N N N 22.311 21.697 34.983 1.901 1.098  -1.533 "H1'"  DDX 18 
DDX "H3'"  H3*  H 0 1 N N N 22.799 23.741 38.316 0.631 -2.488 -0.131 "H3'"  DDX 19 
DDX "H2'"  H2*  H 0 1 N N N 21.458 21.894 37.420 0.000 0.001  -0.001 "H2'"  DDX 20 
DDX "HO1'" HO1* H 0 0 N N N 20.286 21.986 34.701 3.041 2.027  0.009  "HO1'" DDX 21 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DDX P     OP1    DOUB N N 1  
DDX P     OP2    SING N N 2  
DDX P     OP3    SING N N 3  
DDX P     "O5'"  SING N N 4  
DDX OP2   HOP2   SING N N 5  
DDX OP3   HOP3   SING N N 6  
DDX "O5'" "C5'"  SING N N 7  
DDX "C5'" "C4'"  SING N N 8  
DDX "C5'" "H5'"  SING N N 9  
DDX "C5'" "H5''" SING N N 10 
DDX "C4'" "O4'"  SING N N 11 
DDX "C4'" "C3'"  SING N N 12 
DDX "C4'" "H4'"  SING N N 13 
DDX "O4'" "C1'"  SING N N 14 
DDX "C1'" "C2'"  SING N N 15 
DDX "C1'" "O1'"  SING N N 16 
DDX "C1'" "H1'"  SING N N 17 
DDX "C3'" "C2'"  DOUB N N 18 
DDX "C3'" "H3'"  SING N N 19 
DDX "C2'" "H2'"  SING N N 20 
DDX "O1'" "HO1'" SING N N 21 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DDX SMILES           ACDLabs              10.04 "O=P(OCC1OC(O)C=C1)(O)O"                                                               
DDX SMILES_CANONICAL CACTVS               3.341 "O[C@H]1O[C@H](CO[P](O)(O)=O)C=C1"                                                     
DDX SMILES           CACTVS               3.341 "O[CH]1O[CH](CO[P](O)(O)=O)C=C1"                                                       
DDX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C[C@H](O[C@@H]1COP(=O)(O)O)O"                                                      
DDX SMILES           "OpenEye OEToolkits" 1.5.0 "C1=CC(OC1COP(=O)(O)O)O"                                                               
DDX InChI            InChI                1.03  "InChI=1S/C5H9O6P/c6-5-2-1-4(11-5)3-10-12(7,8)9/h1-2,4-6H,3H2,(H2,7,8,9)/t4-,5-/m0/s1" 
DDX InChIKey         InChI                1.03  BSKKIMXBXBXIKI-WHFBIAKZSA-N                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DDX "SYSTEMATIC NAME" ACDLabs              10.04 "[(2S,5S)-5-hydroxy-2,5-dihydrofuran-2-yl]methyl dihydrogen phosphate" 
DDX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,5S)-5-hydroxy-2,5-dihydrofuran-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DDX "Create component"  2002-08-22 RCSB 
DDX "Modify descriptor" 2011-06-04 RCSB 
# 
