data_D5X
# 
_chem_comp.id                                    D5X 
_chem_comp.name                                  "(2S)-2,3,3-trihydroxy-4-oxopentyl dihydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H11 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-06-27 
_chem_comp.pdbx_modified_date                    2013-11-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        230.110 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D5X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4L4Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D5X O3P   O3P   O 0 1 N N N -38.016 24.118 -4.532 3.956  0.732  -1.091 O3P   D5X 1  
D5X P     P     P 0 1 N N N -38.406 22.544 -4.480 2.970  -0.042 -0.080 P     D5X 2  
D5X O2P   O2P   O 0 1 N N N -39.873 22.405 -4.913 3.186  -1.502 -0.201 O2P   D5X 3  
D5X O1P   O1P   O 0 1 N N N -38.177 21.948 -3.090 3.277  0.423  1.430  O1P   D5X 4  
D5X O5    O5    O 0 1 N N N -37.632 21.622 -5.379 1.442  0.306  -0.449 O5    D5X 5  
D5X C5    C5    C 0 1 N N N -36.231 21.795 -5.521 0.326  -0.307 0.200  C5    D5X 6  
D5X C4    C4    C 0 1 N N S -35.533 20.570 -4.973 -0.973 0.248  -0.387 C4    D5X 7  
D5X O4    O4    O 0 1 N N N -35.745 20.705 -3.576 -1.077 1.640  -0.082 O4    D5X 8  
D5X C3    C3    C 0 1 N N N -34.066 20.645 -5.424 -2.165 -0.496 0.217  C3    D5X 9  
D5X O3    O3    O 0 1 N N N -33.730 20.208 -6.723 -2.125 -1.867 -0.185 O3    D5X 10 
D5X "O3'" "O3'" O 0 1 N N N -33.124 21.379 -4.742 -2.104 -0.416 1.642  "O3'" D5X 11 
D5X C2    C2    C 0 1 N N N -33.547 19.319 -4.730 -3.447 0.131  -0.267 C2    D5X 12 
D5X O2    O2    O 0 1 N N N -33.616 18.183 -5.240 -4.284 -0.548 -0.813 O2    D5X 13 
D5X C1    C1    C 0 1 N N N -32.817 19.458 -3.360 -3.686 1.606  -0.071 C1    D5X 14 
D5X H1    H1    H 0 1 N N N -38.769 24.622 -4.817 4.894  0.568  -0.927 H1    D5X 15 
D5X H2    H2    H 0 1 N N N -38.995 21.601 -2.755 3.156  1.370  1.583  H2    D5X 16 
D5X H3    H3    H 0 1 N N N -35.979 21.920 -6.585 0.363  -1.385 0.045  H3    D5X 17 
D5X H4    H4    H 0 1 N N N -35.909 22.686 -4.961 0.363  -0.092 1.268  H4    D5X 18 
D5X H5    H5    H 0 1 N N N -36.001 19.656 -5.368 -0.970 0.112  -1.469 H5    D5X 19 
D5X H6    H6    H 0 1 N N N -35.341 19.975 -3.122 -1.085 1.836  0.865  H6    D5X 20 
D5X H7    H7    H 0 1 N N N -33.549 19.275 -6.707 -2.162 -1.997 -1.143 H7    D5X 21 
D5X H8    H8    H 0 1 N N N -33.463 21.614 -3.886 -2.128 0.487  1.987  H8    D5X 22 
D5X H9    H9    H 0 1 N N N -32.454 18.472 -3.036 -3.306 2.154  -0.933 H9    D5X 23 
D5X H10   H10   H 0 1 N N N -31.965 20.146 -3.467 -4.755 1.791  0.035  H10   D5X 24 
D5X H11   H11   H 0 1 N N N -33.517 19.855 -2.610 -3.169 1.941  0.829  H11   D5X 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D5X O3    C3    SING N N 1  
D5X C5    O5    SING N N 2  
D5X C5    C4    SING N N 3  
D5X C3    C4    SING N N 4  
D5X C3    "O3'" SING N N 5  
D5X C3    C2    SING N N 6  
D5X O5    P     SING N N 7  
D5X O2    C2    DOUB N N 8  
D5X C4    O4    SING N N 9  
D5X O2P   P     DOUB N N 10 
D5X C2    C1    SING N N 11 
D5X O3P   P     SING N N 12 
D5X P     O1P   SING N N 13 
D5X O3P   H1    SING N N 14 
D5X O1P   H2    SING N N 15 
D5X C5    H3    SING N N 16 
D5X C5    H4    SING N N 17 
D5X C4    H5    SING N N 18 
D5X O4    H6    SING N N 19 
D5X O3    H7    SING N N 20 
D5X "O3'" H8    SING N N 21 
D5X C1    H9    SING N N 22 
D5X C1    H10   SING N N 23 
D5X C1    H11   SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D5X SMILES           ACDLabs              12.01 "O=P(OCC(O)C(O)(O)C(=O)C)(O)O"                                                                
D5X InChI            InChI                1.03  "InChI=1S/C5H11O8P/c1-3(6)5(8,9)4(7)2-13-14(10,11)12/h4,7-9H,2H2,1H3,(H2,10,11,12)/t4-/m0/s1" 
D5X InChIKey         InChI                1.03  FWCIRYJUXQBEHG-BYPYZUCNSA-N                                                                   
D5X SMILES_CANONICAL CACTVS               3.385 "CC(=O)C(O)(O)[C@@H](O)CO[P](O)(O)=O"                                                         
D5X SMILES           CACTVS               3.385 "CC(=O)C(O)(O)[CH](O)CO[P](O)(O)=O"                                                           
D5X SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)C([C@H](COP(=O)(O)O)O)(O)O"                                                            
D5X SMILES           "OpenEye OEToolkits" 1.7.6 "CC(=O)C(C(COP(=O)(O)O)O)(O)O"                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D5X "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2,3,3-trihydroxy-4-oxopentyl dihydrogen phosphate"                  
D5X "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2S)-2,3,3-tris(oxidanyl)-4-oxidanylidene-pentyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D5X "Create component" 2013-06-27 RCSB 
D5X "Initial release"  2013-11-06 RCSB 
# 
