data_CJX
#

_chem_comp.id                                   CJX
_chem_comp.name                                 "(2R,3S,4S,5R,6R)-2-(aminomethyl)-6-[(1R,2S,3S,4R,6S)-4,6-bis(azanyl)-3-[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-cyclohexyl]oxy-oxane-3,4,5-triol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H35 N3 O12"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        '3"-deamino-3"-hydroxykanamycin A'
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-25
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       485.483
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    CJX
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6JW7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CJX  C4   C1   C  0  1  N  N  S  48.637   -3.570  21.189  -4.817   1.667   0.372  C4   CJX   1  
CJX  C5   C2   C  0  1  N  N  R  49.484   -3.795  22.445  -3.480   1.322   1.033  C5   CJX   2  
CJX  C6   C3   C  0  1  N  N  N  50.627   -2.782  22.557  -3.273   2.213   2.260  C6   CJX   3  
CJX  C3   C4   C  0  1  N  N  S  47.262   -4.345  21.328  -5.045   0.731  -0.819  C3   CJX   4  
CJX  O2   O1   O  0  1  N  N  N  45.334   -4.974  23.083  -5.135  -1.604  -1.445  O2   CJX   5  
CJX  C2   C5   C  0  1  N  N  R  46.462   -4.085  22.752  -4.996  -0.720  -0.331  C2   CJX   6  
CJX  O3   O2   O  0  1  N  N  N  46.477   -4.008  20.208  -6.325   0.997  -1.398  O3   CJX   7  
CJX  O4   O3   O  0  1  N  N  N  49.462   -3.896  19.906  -4.789   3.021  -0.084  O4   CJX   8  
CJX  O6   O4   O  0  1  N  N  N  49.935   -1.512  22.632  -1.976   1.972   2.810  O6   CJX   9  
CJX  O5   O5   O  0  1  N  N  N  48.712   -3.567  23.665  -3.489  -0.049   1.436  O5   CJX  10  
CJX  C1   C6   C  0  1  N  N  S  47.418   -4.215  23.947  -3.652  -0.973   0.358  C1   CJX  11  
CJX  O1   O6   O  0  1  N  N  N  47.521   -5.635  24.229  -2.593  -0.796  -0.585  O1   CJX  12  
CJX  CBG  C7   C  0  1  N  N  S  48.058   -6.081  25.431  -1.327  -1.281  -0.134  CBG  CJX  13  
CJX  CBA  C8   C  0  1  N  N  S  49.571   -6.387  25.252  -0.209  -0.441  -0.755  CBA  CJX  14  
CJX  OAK  O7   O  0  1  N  N  N  50.409   -5.325  24.690  -0.364   0.924  -0.362  OAK  CJX  15  
CJX  CAT  C9   C  0  1  N  N  R  47.313   -7.405  25.877  -1.160  -2.742  -0.555  CAT  CJX  16  
CJX  NAC  N1   N  0  1  N  N  N  45.792   -7.403  25.832  -2.233  -3.549   0.042  NAC  CJX  17  
CJX  CAN  C10  C  0  1  N  N  N  47.789   -7.716  27.242   0.196  -3.261  -0.072  CAN  CJX  18  
CJX  CAS  C11  C  0  1  N  N  S  49.287   -7.926  27.156   1.314  -2.421  -0.693  CAS  CJX  19  
CJX  NAB  N2   N  0  1  N  N  N  49.765   -8.367  28.459   2.616  -2.919  -0.229  NAB  CJX  20  
CJX  CBF  C12  C  0  1  N  N  R  50.090   -6.696  26.641   1.147  -0.959  -0.272  CBF  CJX  21  
CJX  OAQ  O8   O  0  1  N  N  N  51.500   -7.038  26.517   2.191  -0.175  -0.852  OAQ  CJX  22  
CJX  CBD  C13  C  0  1  N  N  R  52.683   -6.185  26.763   2.504   1.011  -0.118  CBD  CJX  23  
CJX  OAO  O9   O  0  1  N  N  N  52.760   -5.498  28.060   3.188   0.660   1.086  OAO  CJX  24  
CJX  CBB  C14  C  0  1  N  N  R  52.497   -6.448  29.165   4.403  -0.063   0.877  CBB  CJX  25  
CJX  CAL  C15  C  0  1  N  N  N  52.656   -5.880  30.562   5.030  -0.407   2.230  CAL  CJX  26  
CJX  NAA  N3   N  0  1  N  N  N  53.925   -5.130  30.632   4.149  -1.330   2.957  NAA  CJX  27  
CJX  CAW  C16  C  0  1  N  N  S  53.376   -7.807  29.070   5.375   0.799   0.068  CAW  CJX  28  
CJX  OAG  O10  O  0  1  N  N  N  52.729   -8.880  29.807   6.569   0.057  -0.192  OAG  CJX  29  
CJX  CAU  C17  C  0  1  N  N  S  53.597   -8.347  27.649   4.716   1.190  -1.259  CAU  CJX  30  
CJX  OAE  O11  O  0  1  N  N  N  54.630   -9.364  27.657   5.589   2.055  -1.989  OAE  CJX  31  
CJX  CAY  C18  C  0  1  N  N  R  53.867   -7.181  26.645   3.400   1.916  -0.968  CAY  CJX  32  
CJX  OAI  O12  O  0  1  N  N  N  53.919   -7.685  25.307   2.741   2.221  -2.198  OAI  CJX  33  
CJX  H1   H1   H  0  1  N  N  N  48.392   -2.498  21.148  -5.624   1.541   1.094  H1   CJX  34  
CJX  H2   H2   H  0  1  N  N  N  49.896   -4.815  22.434  -2.670   1.487   0.323  H2   CJX  35  
CJX  H3   H3   H  0  1  N  N  N  51.225   -2.960  23.463  -3.354   3.260   1.966  H3   CJX  36  
CJX  H4   H4   H  0  1  N  N  N  51.280   -2.824  21.673  -4.032   1.985   3.007  H4   CJX  37  
CJX  H5   H5   H  0  1  N  N  N  47.494   -5.420  21.297  -4.266   0.892  -1.564  H5   CJX  38  
CJX  H6   H6   H  0  1  N  N  N  44.965   -4.719  23.920  -5.113  -2.541  -1.208  H6   CJX  39  
CJX  H7   H7   H  0  1  N  N  N  46.097   -3.048  22.722  -5.807  -0.894   0.376  H7   CJX  40  
CJX  H8   H8   H  0  1  N  N  N  45.642   -4.457  20.259  -6.536   0.439  -2.159  H8   CJX  41  
CJX  H9   H9   H  0  1  N  N  N  50.265   -3.389  19.908  -5.604   3.307  -0.518  H9   CJX  42  
CJX  H10  H10  H  0  1  N  N  N  50.570   -0.809  22.705  -1.775   2.503   3.592  H10  CJX  43  
CJX  H11  H11  H  0  1  N  N  N  46.953   -3.712  24.808  -3.628  -1.991   0.745  H11  CJX  44  
CJX  H12  H12  H  0  1  N  N  N  47.938   -5.328  26.224  -1.275  -1.207   0.952  H12  CJX  45  
CJX  H13  H13  H  0  1  N  N  N  49.666   -7.291  24.632  -0.260  -0.514  -1.841  H13  CJX  46  
CJX  H14  H14  H  0  1  N  N  N  51.307   -5.628  24.629  -1.154   1.350  -0.722  H14  CJX  47  
CJX  H15  H15  H  0  1  N  N  N  47.661   -8.205  25.207  -1.211  -2.816  -1.641  H15  CJX  48  
CJX  H16  H16  H  0  1  N  N  N  45.448   -8.291  26.136  -2.146  -4.519  -0.222  H16  CJX  49  
CJX  H17  H17  H  0  1  N  N  N  45.442   -6.686  26.435  -2.248  -3.446   1.045  H17  CJX  50  
CJX  H19  H19  H  0  1  N  N  N  47.564   -6.879  27.920   0.247  -3.187   1.015  H19  CJX  51  
CJX  H20  H20  H  0  1  N  N  N  47.301   -8.629  27.613   0.315  -4.302  -0.371  H20  CJX  52  
CJX  H21  H21  H  0  1  N  N  N  49.461   -8.741  26.438   1.263  -2.494  -1.779  H21  CJX  53  
CJX  H22  H22  H  0  1  N  N  N  49.230   -9.156  28.761   2.753  -3.881  -0.501  H22  CJX  54  
CJX  H23  H23  H  0  1  N  N  N  50.729   -8.624  28.391   3.367  -2.336  -0.568  H23  CJX  55  
CJX  H25  H25  H  0  1  N  N  N  49.939   -5.838  27.312   1.199  -0.886   0.814  H25  CJX  56  
CJX  H26  H26  H  0  1  N  N  N  52.771   -5.446  25.953   1.582   1.539   0.128  H26  CJX  57  
CJX  H27  H27  H  0  1  N  N  N  51.449   -6.768  29.073   4.190  -0.982   0.331  H27  CJX  58  
CJX  H28  H28  H  0  1  N  N  N  51.816   -5.206  30.784   5.999  -0.880   2.070  H28  CJX  59  
CJX  H29  H29  H  0  1  N  N  N  52.671   -6.700  31.295   5.162   0.505   2.812  H29  CJX  60  
CJX  H30  H30  H  0  1  N  N  N  54.039   -4.751  31.551   4.542  -1.573   3.855  H30  CJX  61  
CJX  H31  H31  H  0  1  N  N  N  54.687   -5.745  30.428   3.224  -0.941   3.061  H31  CJX  62  
CJX  H33  H33  H  0  1  N  N  N  54.358   -7.595  29.517   5.621   1.698   0.632  H33  CJX  63  
CJX  H34  H34  H  0  1  N  N  N  52.567   -8.599  30.700   7.231   0.543  -0.702  H34  CJX  64  
CJX  H35  H35  H  0  1  N  N  N  52.655   -8.821  27.336   4.518   0.293  -1.845  H35  CJX  65  
CJX  H36  H36  H  0  1  N  N  N  54.405  -10.040  28.286   5.234   2.342  -2.842  H36  CJX  66  
CJX  H37  H37  H  0  1  N  N  N  54.804   -6.673  26.917   3.605   2.839  -0.425  H37  CJX  67  
CJX  H38  H38  H  0  1  N  N  N  54.642   -8.296  25.226   1.896   2.679  -2.089  H38  CJX  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CJX  O4   C4   SING  N  N   1  
CJX  O3   C3   SING  N  N   2  
CJX  C4   C3   SING  N  N   3  
CJX  C4   C5   SING  N  N   4  
CJX  C3   C2   SING  N  N   5  
CJX  C5   C6   SING  N  N   6  
CJX  C5   O5   SING  N  N   7  
CJX  C6   O6   SING  N  N   8  
CJX  C2   O2   SING  N  N   9  
CJX  C2   C1   SING  N  N  10  
CJX  O5   C1   SING  N  N  11  
CJX  C1   O1   SING  N  N  12  
CJX  O1   CBG  SING  N  N  13  
CJX  OAK  CBA  SING  N  N  14  
CJX  CBA  CBG  SING  N  N  15  
CJX  CBA  CBF  SING  N  N  16  
CJX  OAI  CAY  SING  N  N  17  
CJX  CBG  CAT  SING  N  N  18  
CJX  NAC  CAT  SING  N  N  19  
CJX  CAT  CAN  SING  N  N  20  
CJX  OAQ  CBF  SING  N  N  21  
CJX  OAQ  CBD  SING  N  N  22  
CJX  CBF  CAS  SING  N  N  23  
CJX  CAY  CBD  SING  N  N  24  
CJX  CAY  CAU  SING  N  N  25  
CJX  CBD  OAO  SING  N  N  26  
CJX  CAS  CAN  SING  N  N  27  
CJX  CAS  NAB  SING  N  N  28  
CJX  CAU  OAE  SING  N  N  29  
CJX  CAU  CAW  SING  N  N  30  
CJX  OAO  CBB  SING  N  N  31  
CJX  CAW  CBB  SING  N  N  32  
CJX  CAW  OAG  SING  N  N  33  
CJX  CBB  CAL  SING  N  N  34  
CJX  CAL  NAA  SING  N  N  35  
CJX  C4   H1   SING  N  N  36  
CJX  C5   H2   SING  N  N  37  
CJX  C6   H3   SING  N  N  38  
CJX  C6   H4   SING  N  N  39  
CJX  C3   H5   SING  N  N  40  
CJX  O2   H6   SING  N  N  41  
CJX  C2   H7   SING  N  N  42  
CJX  O3   H8   SING  N  N  43  
CJX  O4   H9   SING  N  N  44  
CJX  O6   H10  SING  N  N  45  
CJX  C1   H11  SING  N  N  46  
CJX  CBG  H12  SING  N  N  47  
CJX  CBA  H13  SING  N  N  48  
CJX  OAK  H14  SING  N  N  49  
CJX  CAT  H15  SING  N  N  50  
CJX  NAC  H16  SING  N  N  51  
CJX  NAC  H17  SING  N  N  52  
CJX  CAN  H19  SING  N  N  53  
CJX  CAN  H20  SING  N  N  54  
CJX  CAS  H21  SING  N  N  55  
CJX  NAB  H22  SING  N  N  56  
CJX  NAB  H23  SING  N  N  57  
CJX  CBF  H25  SING  N  N  58  
CJX  CBD  H26  SING  N  N  59  
CJX  CBB  H27  SING  N  N  60  
CJX  CAL  H28  SING  N  N  61  
CJX  CAL  H29  SING  N  N  62  
CJX  NAA  H30  SING  N  N  63  
CJX  NAA  H31  SING  N  N  64  
CJX  CAW  H33  SING  N  N  65  
CJX  OAG  H34  SING  N  N  66  
CJX  CAU  H35  SING  N  N  67  
CJX  OAE  H36  SING  N  N  68  
CJX  CAY  H37  SING  N  N  69  
CJX  OAI  H38  SING  N  N  70  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CJX  InChI             InChI                 1.03   "InChI=1S/C18H35N3O12/c19-2-6-8(23)10(25)12(27)17(30-6)32-15-4(20)1-5(21)16(14(15)29)33-18-13(28)11(26)9(24)7(3-22)31-18/h4-18,22-29H,1-3,19-21H2/t4-,5+,6+,7+,8+,9+,10-,11-,12+,13+,14-,15+,16-,17+,18+/m0/s1"  
CJX  InChIKey          InChI                 1.03   NZCOZAMBHLSNDW-HNDNCJINSA-N  
CJX  SMILES_CANONICAL  CACTVS                3.385  "NC[C@H]1O[C@H](O[C@@H]2[C@@H](N)C[C@@H](N)[C@H](O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O"  
CJX  SMILES            CACTVS                3.385  "NC[CH]1O[CH](O[CH]2[CH](N)C[CH](N)[CH](O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH]2O)[CH](O)[CH](O)[CH]1O"  
CJX  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1[C@@H]([C@H]([C@@H]([C@H]([C@@H]1N)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CN)O)O)O)N"  
CJX  SMILES            "OpenEye OEToolkits"  2.0.6  "C1C(C(C(C(C1N)OC2C(C(C(C(O2)CO)O)O)O)O)OC3C(C(C(C(O3)CN)O)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          CJX
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(aminomethyl)-6-[(1~{R},2~{S},3~{S},4~{R},6~{S})-4,6-bis(azanyl)-3-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-cyclohexyl]oxy-oxane-3,4,5-triol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CJX  "Create component"  2019-04-25  PDBJ  
CJX  "Initial release"   2020-04-15  RCSB  
CJX  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     CJX
_pdbx_chem_comp_synonyms.name        '3"-deamino-3"-hydroxykanamycin A'
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
