data_C9X
#

_chem_comp.id                                   C9X
_chem_comp.name                                 "2-[phenyl-(phenylmethyl)amino]ethyl (4~{R})-5-(5,5-dimethyl-2-oxidanylidene-1,3,2$l^{5}-dioxaphosphinan-2-yl)-2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3-carboxylate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C34 H38 N3 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-23
_chem_comp.pdbx_modified_date                   2019-11-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       631.655
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    C9X
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6JUH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
C9X  C12  C1   C   0  1  N  N  N   -5.252  31.273  27.760   3.684  -2.497  -2.316  C12  C9X   1  
C9X  C36  C2   C   0  1  Y  N  N   -9.442  33.056  23.295  -7.576  -1.972  -0.610  C36  C9X   2  
C9X  C35  C3   C   0  1  Y  N  N   -8.205  33.755  23.228  -6.434  -1.515   0.022  C35  C9X   3  
C9X  C34  C4   C   0  1  Y  N  N   -6.967  33.260  23.737  -6.103  -0.174  -0.034  C34  C9X   4  
C9X  C33  C5   C   0  1  N  N  N   -5.604  34.201  23.626  -4.858   0.324   0.654  C33  C9X   5  
C9X  C31  C6   C   0  1  N  N  N   -3.839  32.235  23.553  -3.415   1.403  -1.132  C31  C9X   6  
C9X  C30  C7   C   0  1  N  N  N   -3.115  31.896  22.162  -2.553   2.401  -0.356  C30  C9X   7  
C9X  O28  O1   O   0  1  N  N  N   -0.438  30.735  22.127  -2.231   0.958   1.802  O28  C9X   8  
C9X  C27  C8   C   0  1  N  N  N   -1.392  30.192  22.660  -1.238   1.082   1.109  C27  C9X   9  
C9X  O26  O2   O  -1  1  N  N  N   -4.285  23.341  23.802   1.810   4.381  -2.742  O26  C9X  10  
C9X  O25  O3   O   0  1  N  N  N   -2.566  24.110  24.706   2.790   5.919  -1.681  O25  C9X  11  
C9X  C23  C9   C   0  1  Y  N  N   -3.216  26.771  24.322   1.758   2.694  -0.528  C23  C9X  12  
C9X  C22  C10  C   0  1  Y  N  N   -4.032  25.774  23.851   2.311   3.960  -0.495  C22  C9X  13  
C9X  C21  C11  C   0  1  Y  N  N   -5.187  26.142  23.093   2.871   4.439   0.675  C21  C9X  14  
C9X  C20  C12  C   0  1  Y  N  N   -5.473  27.535  22.853   2.878   3.652   1.811  C20  C9X  15  
C9X  C19  C13  C   0  1  Y  N  N   -4.637  28.580  23.326   2.324   2.385   1.778  C19  C9X  16  
C9X  C18  C14  C   0  1  Y  N  N   -3.514  28.183  24.074   1.759   1.908   0.610  C18  C9X  17  
C9X  C16  C15  C   0  1  N  N  N   -3.039  31.659  29.053   5.293  -2.849  -0.413  C16  C9X  18  
C9X  C15  C16  C   0  1  N  N  N   -4.977  33.286  29.318   5.182  -4.490  -2.288  C15  C9X  19  
C9X  C13  C17  C   0  1  N  N  N   -4.225  32.364  28.302   4.366  -3.531  -1.419  C13  C9X  20  
C9X  C01  C18  C   0  1  N  N  N   -0.983  27.416  28.125   3.268  -2.035   2.518  C01  C9X  21  
C9X  C02  C19  C   0  1  N  N  N   -1.088  27.774  26.584   2.194  -1.038   2.165  C02  C9X  22  
C9X  N03  N1   N   0  1  N  N  N   -0.398  27.348  25.530   1.215  -0.728   3.099  N03  C9X  23  
C9X  C04  C20  C   0  1  N  N  N   -0.214  28.257  24.278   0.054  -0.129   2.701  C04  C9X  24  
C9X  C05  C21  C   0  1  N  N  N    1.143  28.152  23.532  -1.148  -0.149   3.609  C05  C9X  25  
C9X  C06  C22  C   0  1  N  N  N   -1.231  29.147  23.865  -0.023   0.479   1.502  C06  C9X  26  
C9X  C07  C23  C   0  1  N  N  R   -2.524  29.145  24.716   1.157   0.528   0.573  C07  C9X  27  
C9X  C08  C24  C   0  1  N  N  N   -2.417  28.541  26.256   2.201  -0.473   0.979  C08  C9X  28  
C9X  P09  P1   P   0  1  N  N  N   -3.315  29.414  27.614   3.502  -0.919  -0.204  P09  C9X  29  
C9X  O10  O4   O   0  1  N  N  N   -3.702  28.396  28.644   4.254   0.288  -0.614  O10  C9X  30  
C9X  O11  O5   O   0  1  N  N  N   -4.579  30.332  26.983   2.852  -1.647  -1.504  O11  C9X  31  
C9X  C14  C25  C   0  1  N  N  N   -3.663  33.236  27.134   3.297  -4.324  -0.663  C14  C9X  32  
C9X  O17  O6   O   0  1  N  N  N   -2.433  30.634  28.257   4.509  -2.011   0.455  O17  C9X  33  
C9X  N24  N2   N   1  1  N  N  N   -3.625  24.293  24.137   2.303   4.803  -1.711  N24  C9X  34  
C9X  O29  O7   O   0  1  N  N  N   -2.620  30.556  22.129  -1.298   1.797  -0.034  O29  C9X  35  
C9X  N32  N3   N   0  1  N  N  N   -4.126  33.672  23.826  -3.727   0.257  -0.274  N32  C9X  36  
C9X  C37  C26  C   0  1  Y  N  N   -9.485  31.813  23.889  -8.386  -1.087  -1.298  C37  C9X  37  
C9X  C38  C27  C   0  1  Y  N  N   -8.287  31.290  24.419  -8.057   0.254  -1.349  C38  C9X  38  
C9X  C39  C28  C   0  1  Y  N  N   -7.066  32.004  24.338  -6.913   0.710  -0.722  C39  C9X  39  
C9X  C40  C29  C   0  1  Y  N  N   -2.897  34.630  24.176  -2.945  -0.899  -0.341  C40  C9X  40  
C9X  C41  C30  C   0  1  Y  N  N   -3.038  35.948  24.742  -1.891  -0.975  -1.242  C41  C9X  41  
C9X  C42  C31  C   0  1  Y  N  N   -1.908  36.816  24.971  -1.120  -2.119  -1.305  C42  C9X  42  
C9X  C43  C32  C   0  1  Y  N  N   -0.578  36.427  24.683  -1.397  -3.188  -0.473  C43  C9X  43  
C9X  C44  C33  C   0  1  Y  N  N   -0.373  35.145  24.149  -2.446  -3.116   0.425  C44  C9X  44  
C9X  C45  C34  C   0  1  Y  N  N   -1.488  34.275  23.889  -3.218  -1.972   0.497  C45  C9X  45  
C9X  H1   H1   H   0  1  N  N  N   -6.021  31.768  27.149   4.441  -1.894  -2.817  H1   C9X  46  
C9X  H2   H2   H   0  1  N  N  N   -5.730  30.768  28.612   3.072  -3.006  -3.060  H2   C9X  47  
C9X  H3   H3   H   0  1  N  N  N  -10.339  33.495  22.884  -7.833  -3.020  -0.570  H3   C9X  48  
C9X  H4   H4   H   0  1  N  N  N   -8.202  34.728  22.759  -5.801  -2.205   0.559  H4   C9X  49  
C9X  H5   H5   H   0  1  N  N  N   -5.627  34.636  22.616  -5.007   1.356   0.972  H5   C9X  50  
C9X  H6   H6   H   0  1  N  N  N   -5.735  34.999  24.372  -4.651  -0.298   1.525  H6   C9X  51  
C9X  H7   H7   H   0  1  N  N  N   -4.797  31.695  23.570  -4.341   1.887  -1.443  H7   C9X  52  
C9X  H8   H8   H   0  1  N  N  N   -3.194  31.864  24.363  -2.871   1.060  -2.012  H8   C9X  53  
C9X  H9   H9   H   0  1  N  N  N   -2.273  32.589  22.022  -2.383   3.287  -0.969  H9   C9X  54  
C9X  H10  H10  H   0  1  N  N  N   -3.838  32.028  21.344  -3.065   2.687   0.562  H10  C9X  55  
C9X  H11  H11  H   0  1  N  N  N   -2.334  26.509  24.888   1.321   2.320  -1.442  H11  C9X  56  
C9X  H12  H12  H   0  1  N  N  N   -5.843  25.379  22.701   3.303   5.429   0.701  H12  C9X  57  
C9X  H13  H13  H   0  1  N  N  N   -6.358  27.793  22.291   3.316   4.025   2.725  H13  C9X  58  
C9X  H14  H14  H   0  1  N  N  N   -4.851  29.619  23.123   2.330   1.770   2.665  H14  C9X  59  
C9X  H15  H15  H   0  1  N  N  N   -3.424  31.208  29.980   5.808  -3.606   0.179  H15  C9X  60  
C9X  H16  H16  H   0  1  N  N  N   -2.277  32.413  29.301   6.025  -2.242  -0.945  H16  C9X  61  
C9X  H17  H17  H   0  1  N  N  N   -5.375  32.676  30.143   5.938  -3.929  -2.837  H17  C9X  62  
C9X  H18  H18  H   0  1  N  N  N   -4.279  34.035  29.720   5.670  -5.230  -1.653  H18  C9X  63  
C9X  H19  H19  H   0  1  N  N  N   -5.806  33.796  28.806   4.521  -4.995  -2.992  H19  C9X  64  
C9X  H20  H20  H   0  1  N  N  N   -1.739  27.985  28.686   3.109  -2.395   3.535  H20  C9X  65  
C9X  H21  H21  H   0  1  N  N  N   -1.157  26.339  28.264   3.227  -2.875   1.824  H21  C9X  66  
C9X  H22  H22  H   0  1  N  N  N    0.020  27.676  28.494   4.245  -1.556   2.451  H22  C9X  67  
C9X  H24  H24  H   0  1  N  N  N    0.007  26.434  25.541   1.356  -0.936   4.036  H24  C9X  68  
C9X  H25  H25  H   0  1  N  N  N    1.776  27.400  24.026  -0.900  -0.680   4.528  H25  C9X  69  
C9X  H26  H26  H   0  1  N  N  N    0.965  27.853  22.488  -1.440   0.873   3.848  H26  C9X  70  
C9X  H27  H27  H   0  1  N  N  N    1.649  29.128  23.553  -1.974  -0.655   3.108  H27  C9X  71  
C9X  H28  H28  H   0  1  N  N  N   -2.948  30.159  24.763   0.824   0.309  -0.442  H28  C9X  72  
C9X  H30  H30  H   0  1  N  N  N   -2.958  33.979  27.536   2.647  -4.830  -1.377  H30  C9X  73  
C9X  H31  H31  H   0  1  N  N  N   -3.142  32.590  26.412   3.779  -5.063  -0.023  H31  C9X  74  
C9X  H32  H32  H   0  1  N  N  N   -4.493  33.753  26.631   2.705  -3.643  -0.051  H32  C9X  75  
C9X  H33  H33  H   0  1  N  N  N  -10.408  31.256  23.947  -9.276  -1.445  -1.795  H33  C9X  76  
C9X  H34  H34  H   0  1  N  N  N   -8.301  30.322  24.898  -8.690   0.945  -1.886  H34  C9X  77  
C9X  H35  H35  H   0  1  N  N  N   -6.176  31.559  24.758  -6.654   1.758  -0.766  H35  C9X  78  
C9X  H36  H36  H   0  1  N  N  N   -4.025  36.299  25.004  -1.674  -0.140  -1.892  H36  C9X  79  
C9X  H37  H37  H   0  1  N  N  N   -2.084  37.801  25.378  -0.300  -2.179  -2.005  H37  C9X  80  
C9X  H38  H38  H   0  1  N  N  N    0.251  37.094  24.868  -0.793  -4.082  -0.525  H38  C9X  81  
C9X  H39  H39  H   0  1  N  N  N    0.630  34.809  23.932  -2.660  -3.953   1.073  H39  C9X  82  
C9X  H40  H40  H   0  1  N  N  N   -1.286  33.305  23.459  -4.037  -1.916   1.199  H40  C9X  83  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
C9X  O28  C27  DOUB  N  N   1  
C9X  O29  C30  SING  N  N   2  
C9X  O29  C27  SING  N  N   3  
C9X  C30  C31  SING  N  N   4  
C9X  C27  C06  SING  N  N   5  
C9X  C20  C21  DOUB  Y  N   6  
C9X  C20  C19  SING  Y  N   7  
C9X  C21  C22  SING  Y  N   8  
C9X  C35  C36  DOUB  Y  N   9  
C9X  C35  C34  SING  Y  N  10  
C9X  C36  C37  SING  Y  N  11  
C9X  C19  C18  DOUB  Y  N  12  
C9X  C05  C04  SING  N  N  13  
C9X  C31  N32  SING  N  N  14  
C9X  C33  C34  SING  N  N  15  
C9X  C33  N32  SING  N  N  16  
C9X  C34  C39  DOUB  Y  N  17  
C9X  O26  N24  SING  N  N  18  
C9X  N32  C40  SING  N  N  19  
C9X  C22  N24  SING  N  N  20  
C9X  C22  C23  DOUB  Y  N  21  
C9X  C06  C04  DOUB  N  N  22  
C9X  C06  C07  SING  N  N  23  
C9X  C37  C38  DOUB  Y  N  24  
C9X  C45  C44  DOUB  Y  N  25  
C9X  C45  C40  SING  Y  N  26  
C9X  C18  C23  SING  Y  N  27  
C9X  C18  C07  SING  N  N  28  
C9X  N24  O25  DOUB  N  N  29  
C9X  C44  C43  SING  Y  N  30  
C9X  C40  C41  DOUB  Y  N  31  
C9X  C04  N03  SING  N  N  32  
C9X  C39  C38  SING  Y  N  33  
C9X  C43  C42  DOUB  Y  N  34  
C9X  C07  C08  SING  N  N  35  
C9X  C41  C42  SING  Y  N  36  
C9X  N03  C02  SING  N  N  37  
C9X  C08  C02  DOUB  N  N  38  
C9X  C08  P09  SING  N  N  39  
C9X  C02  C01  SING  N  N  40  
C9X  O11  P09  SING  N  N  41  
C9X  O11  C12  SING  N  N  42  
C9X  C14  C13  SING  N  N  43  
C9X  P09  O17  SING  N  N  44  
C9X  P09  O10  DOUB  N  N  45  
C9X  C12  C13  SING  N  N  46  
C9X  O17  C16  SING  N  N  47  
C9X  C13  C16  SING  N  N  48  
C9X  C13  C15  SING  N  N  49  
C9X  C12  H1   SING  N  N  50  
C9X  C12  H2   SING  N  N  51  
C9X  C36  H3   SING  N  N  52  
C9X  C35  H4   SING  N  N  53  
C9X  C33  H5   SING  N  N  54  
C9X  C33  H6   SING  N  N  55  
C9X  C31  H7   SING  N  N  56  
C9X  C31  H8   SING  N  N  57  
C9X  C30  H9   SING  N  N  58  
C9X  C30  H10  SING  N  N  59  
C9X  C23  H11  SING  N  N  60  
C9X  C21  H12  SING  N  N  61  
C9X  C20  H13  SING  N  N  62  
C9X  C19  H14  SING  N  N  63  
C9X  C16  H15  SING  N  N  64  
C9X  C16  H16  SING  N  N  65  
C9X  C15  H17  SING  N  N  66  
C9X  C15  H18  SING  N  N  67  
C9X  C15  H19  SING  N  N  68  
C9X  C01  H20  SING  N  N  69  
C9X  C01  H21  SING  N  N  70  
C9X  C01  H22  SING  N  N  71  
C9X  N03  H24  SING  N  N  72  
C9X  C05  H25  SING  N  N  73  
C9X  C05  H26  SING  N  N  74  
C9X  C05  H27  SING  N  N  75  
C9X  C07  H28  SING  N  N  76  
C9X  C14  H30  SING  N  N  77  
C9X  C14  H31  SING  N  N  78  
C9X  C14  H32  SING  N  N  79  
C9X  C37  H33  SING  N  N  80  
C9X  C38  H34  SING  N  N  81  
C9X  C39  H35  SING  N  N  82  
C9X  C41  H36  SING  N  N  83  
C9X  C42  H37  SING  N  N  84  
C9X  C43  H38  SING  N  N  85  
C9X  C44  H39  SING  N  N  86  
C9X  C45  H40  SING  N  N  87  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
C9X  InChI             InChI                 1.03   "InChI=1S/C34H38N3O7P/c1-24-30(33(38)42-19-18-36(28-15-9-6-10-16-28)21-26-12-7-5-8-13-26)31(27-14-11-17-29(20-27)37(39)40)32(25(2)35-24)45(41)43-22-34(3,4)23-44-45/h5-17,20,31,35H,18-19,21-23H2,1-4H3/t31-/m1/s1"  
C9X  InChIKey          InChI                 1.03   NSVFSAJIGAJDMR-WJOKGBTCSA-N  
C9X  SMILES_CANONICAL  CACTVS                3.385  "CC1=C([C@@H](c2cccc(c2)[N+]([O-])=O)C(=C(C)N1)[P]3(=O)OCC(C)(C)CO3)C(=O)OCCN(Cc4ccccc4)c5ccccc5"  
C9X  SMILES            CACTVS                3.385  "CC1=C([CH](c2cccc(c2)[N+]([O-])=O)C(=C(C)N1)[P]3(=O)OCC(C)(C)CO3)C(=O)OCCN(Cc4ccccc4)c5ccccc5"  
C9X  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC1=C([C@H](C(=C(N1)C)P2(=O)OCC(CO2)(C)C)c3cccc(c3)[N+](=O)[O-])C(=O)OCCN(Cc4ccccc4)c5ccccc5"  
C9X  SMILES            "OpenEye OEToolkits"  2.0.6  "CC1=C(C(C(=C(N1)C)P2(=O)OCC(CO2)(C)C)c3cccc(c3)[N+](=O)[O-])C(=O)OCCN(Cc4ccccc4)c5ccccc5"  
#
_pdbx_chem_comp_identifier.comp_id          C9X
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "2-[phenyl-(phenylmethyl)amino]ethyl (4~{R})-5-(5,5-dimethyl-2-oxidanylidene-1,3,2$l^{5}-dioxaphosphinan-2-yl)-2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3-carboxylate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
C9X  "Create component"  2019-04-23  PDBJ  
C9X  "Initial release"   2019-11-06  RCSB  
##
