data_B6X
#

_chem_comp.id                                   B6X
_chem_comp.name                                 "(3R)-3-[(carboxymethyl)sulfanyl]nonanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H20 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-01-17
_chem_comp.pdbx_modified_date                   2019-06-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       248.339
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    B6X
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6J39
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B6X  OAB  O1   O  0  1  N  N  N  -15.590   -5.483  33.233  -1.918  -2.959  -1.050  OAB  B6X   1  
B6X  CAN  C1   C  0  1  N  N  N  -14.964   -6.379  33.849  -1.798  -2.739   0.132  CAN  B6X   2  
B6X  OAD  O2   O  0  1  N  N  N  -15.246   -6.799  34.995  -2.082  -3.699   1.026  OAD  B6X   3  
B6X  CAK  C2   C  0  1  N  N  N  -13.735   -6.942  33.182  -1.323  -1.388   0.602  CAK  B6X   4  
B6X  SAM  S1   S  0  1  N  N  N  -14.338   -8.449  32.342  -1.018  -0.321  -0.833  SAM  B6X   5  
B6X  CAP  C3   C  0  1  N  N  R  -12.827   -9.442  32.213  -0.576   1.266  -0.074  CAP  B6X   6  
B6X  CAL  C4   C  0  1  N  N  N  -13.117  -10.911  32.553  -1.708   1.724   0.847  CAL  B6X   7  
B6X  CAO  C5   C  0  1  N  N  N  -14.100  -11.551  31.554  -2.936   2.022   0.025  CAO  B6X   8  
B6X  OAE  O3   O  0  1  N  N  N  -14.985  -10.838  31.021  -2.876   1.995  -1.181  OAE  B6X   9  
B6X  OAC  O4   O  0  1  N  N  N  -13.996  -12.785  31.417  -4.095   2.317   0.633  OAC  B6X  10  
B6X  CAJ  C6   C  0  1  N  N  N  -12.045   -9.402  30.894   0.709   1.102   0.739  CAJ  B6X  11  
B6X  CAI  C7   C  0  1  N  N  N  -12.547   -8.298  29.980   1.869   0.766  -0.201  CAI  B6X  12  
B6X  CAH  C8   C  0  1  N  N  N  -11.372   -7.754  29.153   3.154   0.602   0.613  CAH  B6X  13  
B6X  CAG  C9   C  0  1  N  N  N  -10.871   -8.785  28.148   4.313   0.265  -0.327  CAG  B6X  14  
B6X  CAF  C10  C  0  1  N  N  N  -11.632   -8.564  26.843   5.599   0.101   0.487  CAF  B6X  15  
B6X  CAA  C11  C  0  1  N  N  N  -11.129   -9.576  25.771   6.758  -0.235  -0.453  CAA  B6X  16  
B6X  H1   H1   H  0  1  N  N  N  -16.006   -6.335  35.325  -2.380  -4.550   0.676  H1   B6X  17  
B6X  H2   H2   H  0  1  N  N  N  -12.965   -7.191  33.927  -2.086  -0.936   1.236  H2   B6X  18  
B6X  H3   H3   H  0  1  N  N  N  -13.323   -6.227  32.454  -0.401  -1.505   1.171  H3   B6X  19  
B6X  H4   H4   H  0  1  N  N  N  -12.167   -9.047  32.999  -0.419   2.011  -0.855  H4   B6X  20  
B6X  H5   H5   H  0  1  N  N  N  -13.552  -10.963  33.562  -1.934   0.935   1.565  H5   B6X  21  
B6X  H6   H6   H  0  1  N  N  N  -12.172  -11.474  32.532  -1.401   2.623   1.381  H6   B6X  22  
B6X  H7   H7   H  0  1  N  N  N  -14.689  -13.100  30.848  -4.855   2.501   0.064  H7   B6X  23  
B6X  H8   H8   H  0  1  N  N  N  -12.159  -10.369  30.382   0.927   2.031   1.267  H8   B6X  24  
B6X  H9   H9   H  0  1  N  N  N  -10.982   -9.227  31.115   0.582   0.296   1.462  H9   B6X  25  
B6X  H10  H10  H  0  1  N  N  N  -12.978   -7.487  30.585   1.651  -0.163  -0.728  H10  B6X  26  
B6X  H11  H11  H  0  1  N  N  N  -13.317   -8.701  29.305   1.997   1.572  -0.923  H11  B6X  27  
B6X  H12  H12  H  0  1  N  N  N  -10.549   -7.488  29.833   3.371   1.531   1.140  H12  B6X  28  
B6X  H13  H13  H  0  1  N  N  N  -11.703   -6.857  28.610   3.026  -0.205   1.336  H13  B6X  29  
B6X  H14  H14  H  0  1  N  N  N  -11.061   -9.800  28.526   4.096  -0.664  -0.854  H14  B6X  30  
B6X  H15  H15  H  0  1  N  N  N   -9.792   -8.652  27.980   4.441   1.072  -1.049  H15  B6X  31  
B6X  H16  H16  H  0  1  N  N  N  -11.460   -7.537  26.487   5.816   1.030   1.014  H16  B6X  32  
B6X  H17  H17  H  0  1  N  N  N  -12.708   -8.717  27.015   5.471  -0.705   1.209  H17  B6X  33  
B6X  H18  H18  H  0  1  N  N  N  -11.677   -9.417  24.830   6.541  -1.164  -0.980  H18  B6X  34  
B6X  H19  H19  H  0  1  N  N  N  -10.053   -9.423  25.599   6.886   0.571  -1.175  H19  B6X  35  
B6X  H20  H20  H  0  1  N  N  N  -11.301  -10.603  26.127   7.674  -0.352   0.127  H20  B6X  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B6X  CAA  CAF  SING  N  N   1  
B6X  CAF  CAG  SING  N  N   2  
B6X  CAG  CAH  SING  N  N   3  
B6X  CAH  CAI  SING  N  N   4  
B6X  CAI  CAJ  SING  N  N   5  
B6X  CAJ  CAP  SING  N  N   6  
B6X  OAE  CAO  DOUB  N  N   7  
B6X  OAC  CAO  SING  N  N   8  
B6X  CAO  CAL  SING  N  N   9  
B6X  CAP  SAM  SING  N  N  10  
B6X  CAP  CAL  SING  N  N  11  
B6X  SAM  CAK  SING  N  N  12  
B6X  CAK  CAN  SING  N  N  13  
B6X  OAB  CAN  DOUB  N  N  14  
B6X  CAN  OAD  SING  N  N  15  
B6X  OAD  H1   SING  N  N  16  
B6X  CAK  H2   SING  N  N  17  
B6X  CAK  H3   SING  N  N  18  
B6X  CAP  H4   SING  N  N  19  
B6X  CAL  H5   SING  N  N  20  
B6X  CAL  H6   SING  N  N  21  
B6X  OAC  H7   SING  N  N  22  
B6X  CAJ  H8   SING  N  N  23  
B6X  CAJ  H9   SING  N  N  24  
B6X  CAI  H10  SING  N  N  25  
B6X  CAI  H11  SING  N  N  26  
B6X  CAH  H12  SING  N  N  27  
B6X  CAH  H13  SING  N  N  28  
B6X  CAG  H14  SING  N  N  29  
B6X  CAG  H15  SING  N  N  30  
B6X  CAF  H16  SING  N  N  31  
B6X  CAF  H17  SING  N  N  32  
B6X  CAA  H18  SING  N  N  33  
B6X  CAA  H19  SING  N  N  34  
B6X  CAA  H20  SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B6X  SMILES            ACDLabs               12.01  "O=C(O)CSC(CC(=O)O)CCCCCC"  
B6X  InChI             InChI                 1.03   "InChI=1S/C11H20O4S/c1-2-3-4-5-6-9(7-10(12)13)16-8-11(14)15/h9H,2-8H2,1H3,(H,12,13)(H,14,15)/t9-/m1/s1"  
B6X  InChIKey          InChI                 1.03   YVPPUISYPJOKND-SECBINFHSA-N  
B6X  SMILES_CANONICAL  CACTVS                3.385  "CCCCCC[C@H](CC(O)=O)SCC(O)=O"  
B6X  SMILES            CACTVS                3.385  "CCCCCC[CH](CC(O)=O)SCC(O)=O"  
B6X  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CCCCCC[C@H](CC(=O)O)SCC(=O)O"  
B6X  SMILES            "OpenEye OEToolkits"  2.0.6  "CCCCCCC(CC(=O)O)SCC(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B6X  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R)-3-[(carboxymethyl)sulfanyl]nonanoic acid"  
B6X  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(3~{R})-3-(2-hydroxy-2-oxoethylsulfanyl)nonanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B6X  "Create component"  2019-01-17  RCSB  
B6X  "Initial release"   2019-06-12  RCSB  
##
