data_A9X
# 
_chem_comp.id                                    A9X 
_chem_comp.name                                  "(2R)-4-(5,6-dimethoxy-1-benzoselenophen-2-yl)-2-ethyl-4-oxidanylidene-butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H18 O5 Se" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-16 
_chem_comp.pdbx_modified_date                    2022-09-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        369.271 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A9X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7X9Q 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A9X C10  C1  C  0 1 Y N N -0.616 -20.338 -2.312 -0.693 -0.513 -0.120 C10  A9X 1  
A9X C13  C2  C  0 1 N N R 1.833  -18.955 -4.573 -4.415 0.277  -0.210 C13  A9X 2  
A9X C15  C3  C  0 1 N N N 3.677  -17.912 -5.845 -6.250 -0.978 0.929  C15  A9X 3  
A9X C20  C4  C  0 1 Y N N -0.336 -21.703 -2.628 0.081  0.594  -0.050 C20  A9X 4  
A9X C21  C5  C  0 1 Y N N -0.963 -22.669 -1.646 1.534  0.550  -0.007 C21  A9X 5  
A9X C22  C6  C  0 1 Y N N -0.803 -24.056 -1.726 2.409  1.668  0.066  C22  A9X 6  
A9X C01  C7  C  0 1 N N N -0.680 -26.652 -2.000 3.935  3.872  0.203  C01  A9X 7  
A9X C03  C8  C  0 1 Y N N -1.433 -24.882 -0.781 3.771  1.502  0.100  C03  A9X 8  
A9X C04  C9  C  0 1 Y N N -2.179 -24.335 0.261  4.343  0.230  0.063  C04  A9X 9  
A9X C06  C10 C  0 1 N N N -3.456 -24.487 2.176  6.195  -1.259 0.056  C06  A9X 10 
A9X C07  C11 C  0 1 Y N N -2.322 -22.926 0.378  3.506  -0.881 -0.008 C07  A9X 11 
A9X C08  C12 C  0 1 Y N N -1.727 -22.111 -0.577 2.155  -0.715 -0.042 C08  A9X 12 
A9X C11  C13 C  0 1 N N N -0.170 -19.063 -2.990 -2.097 -0.602 -0.171 C11  A9X 13 
A9X C12  C14 C  0 1 N N N 0.307  -19.030 -4.425 -2.933 0.651  -0.143 C12  A9X 14 
A9X C14  C15 C  0 1 N N N 2.253  -17.695 -5.308 -4.803 -0.496 1.051  C14  A9X 15 
A9X C16  C16 C  0 1 N N N 2.694  -19.167 -3.319 -5.245 1.531  -0.306 C16  A9X 16 
A9X O02  O1  O  0 1 N N N -1.338 -26.261 -0.837 4.576  2.596  0.169  O02  A9X 17 
A9X O05  O2  O  0 1 N N N -2.777 -25.198 1.184  5.692  0.078  0.097  O05  A9X 18 
A9X O17  O3  O  0 1 N N N 2.998  -20.374 -3.088 -4.707 2.613  -0.319 O17  A9X 19 
A9X O18  O4  O  0 1 N N N 3.192  -18.237 -2.558 -6.583 1.446  -0.377 O18  A9X 20 
A9X O19  O5  O  0 1 N N N -0.231 -18.068 -2.350 -2.634 -1.689 -0.238 O19  A9X 21 
A9X SE09 SE1 SE 0 0 Y N N -1.667 -20.257 -0.771 0.640  -1.977 -0.141 SE09 A9X 22 
A9X H1   H1  H  0 1 N N N 2.097  -19.785 -5.245 -4.593 -0.345 -1.087 H1   A9X 23 
A9X H2   H2  H  0 1 N N N 4.007  -17.012 -6.384 -6.344 -1.629 0.060  H2   A9X 24 
A9X H3   H3  H  0 1 N N N 4.360  -18.108 -5.005 -6.527 -1.529 1.828  H3   A9X 25 
A9X H4   H4  H  0 1 N N N 3.683  -18.772 -6.531 -6.910 -0.118 0.813  H4   A9X 26 
A9X H5   H5  H  0 1 N N N 0.258  -22.012 -3.475 -0.405 1.558  -0.024 H5   A9X 27 
A9X H6   H6  H  0 1 N N N -0.199 -24.489 -2.509 1.995  2.665  0.095  H6   A9X 28 
A9X H7   H7  H  0 1 N N N -0.611 -27.749 -2.032 4.690  4.657  0.258  H7   A9X 29 
A9X H8   H8  H  0 1 N N N -1.241 -26.294 -2.876 3.339  4.004  -0.701 H8   A9X 30 
A9X H9   H9  H  0 1 N N N 0.332  -26.221 -2.011 3.287  3.930  1.077  H9   A9X 31 
A9X H10  H10 H  0 1 N N N -3.914 -25.192 2.885  5.869  -1.742 -0.865 H10  A9X 32 
A9X H11  H11 H  0 1 N N N -2.748 -23.838 2.711  7.285  -1.238 0.089  H11  A9X 33 
A9X H12  H12 H  0 1 N N N -4.241 -23.871 1.713  5.817  -1.816 0.912  H12  A9X 34 
A9X H13  H13 H  0 1 N N N -2.883 -22.496 1.195  3.929  -1.874 -0.037 H13  A9X 35 
A9X H14  H14 H  0 1 N N N -0.132 -18.149 -4.915 -2.677 1.278  -0.998 H14  A9X 36 
A9X H15  H15 H  0 1 N N N -0.045 -19.943 -4.928 -2.737 1.198  0.779  H15  A9X 37 
A9X H16  H16 H  0 1 N N N 2.241  -16.838 -4.618 -4.143 -1.356 1.168  H16  A9X 38 
A9X H17  H17 H  0 1 N N N 1.564  -17.503 -6.144 -4.709 0.155  1.920  H17  A9X 39 
A9X H18  H18 H  0 1 N N N 3.748  -18.632 -1.897 -7.073 2.278  -0.437 H18  A9X 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A9X C15  C14  SING N N 1  
A9X C14  C13  SING N N 2  
A9X C13  C12  SING N N 3  
A9X C13  C16  SING N N 4  
A9X C12  C11  SING N N 5  
A9X C16  O17  DOUB N N 6  
A9X C16  O18  SING N N 7  
A9X C11  O19  DOUB N N 8  
A9X C11  C10  SING N N 9  
A9X C20  C10  DOUB Y N 10 
A9X C20  C21  SING Y N 11 
A9X C10  SE09 SING Y N 12 
A9X C01  O02  SING N N 13 
A9X C22  C21  DOUB Y N 14 
A9X C22  C03  SING Y N 15 
A9X C21  C08  SING Y N 16 
A9X O02  C03  SING N N 17 
A9X C03  C04  DOUB Y N 18 
A9X SE09 C08  SING Y N 19 
A9X C08  C07  DOUB Y N 20 
A9X C04  C07  SING Y N 21 
A9X C04  O05  SING N N 22 
A9X O05  C06  SING N N 23 
A9X C13  H1   SING N N 24 
A9X C15  H2   SING N N 25 
A9X C15  H3   SING N N 26 
A9X C15  H4   SING N N 27 
A9X C20  H5   SING N N 28 
A9X C22  H6   SING N N 29 
A9X C01  H7   SING N N 30 
A9X C01  H8   SING N N 31 
A9X C01  H9   SING N N 32 
A9X C06  H10  SING N N 33 
A9X C06  H11  SING N N 34 
A9X C06  H12  SING N N 35 
A9X C07  H13  SING N N 36 
A9X C12  H14  SING N N 37 
A9X C12  H15  SING N N 38 
A9X C14  H16  SING N N 39 
A9X C14  H17  SING N N 40 
A9X O18  H18  SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A9X InChI            InChI                1.03  "InChI=1S/C16H18O5Se/c1-4-9(16(18)19)5-11(17)15-7-10-6-12(20-2)13(21-3)8-14(10)22-15/h6-9H,4-5H2,1-3H3,(H,18,19)/t9-/m1/s1" 
A9X InChIKey         InChI                1.03  BWQHPFYQJHFPHN-SECBINFHSA-N                                                                                                 
A9X SMILES_CANONICAL CACTVS               3.385 "CC[C@H](CC(=O)c1[se]c2cc(OC)c(OC)cc2c1)C(O)=O"                                                                             
A9X SMILES           CACTVS               3.385 "CC[CH](CC(=O)c1[se]c2cc(OC)c(OC)cc2c1)C(O)=O"                                                                              
A9X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](CC(=O)c1cc2cc(c(cc2[se]1)OC)OC)C(=O)O"                                                                             
A9X SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(CC(=O)c1cc2cc(c(cc2[se]1)OC)OC)C(=O)O"                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           A9X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-4-(5,6-dimethoxy-1-benzoselenophen-2-yl)-2-ethyl-4-oxidanylidene-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A9X "Create component" 2022-03-16 PDBJ 
A9X "Initial release"  2022-09-28 RCSB 
# 
