data_9YX
# 
_chem_comp.id                                    9YX 
_chem_comp.name                                  "(2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H15 N2 O7 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-17 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        350.285 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9YX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7XEK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9YX OAM O1  O 0 1 N N N 32.801 -34.723 -39.482 4.184  -2.004 1.248  OAM 9YX 1  
9YX PAL P1  P 0 1 N N N 31.859 -35.136 -38.345 4.412  -1.020 0.167  PAL 9YX 2  
9YX OAO O2  O 0 1 N N N 31.967 -36.564 -37.828 5.809  -0.261 0.418  OAO 9YX 3  
9YX OAN O3  O 0 1 N N N 30.476 -34.604 -38.671 4.463  -1.783 -1.251 OAN 9YX 4  
9YX OAK O4  O 0 1 N N N 32.354 -34.212 -37.015 3.212  0.053  0.156  OAK 9YX 5  
9YX CAJ C1  C 0 1 N N N 32.527 -32.734 -37.257 1.836  -0.320 0.059  CAJ 9YX 6  
9YX CAA C2  C 0 1 Y N N 33.338 -32.330 -36.071 0.978  0.919  0.076  CAA 9YX 7  
9YX CAB C3  C 0 1 Y N N 32.755 -31.563 -35.101 1.549  2.163  0.275  CAB 9YX 8  
9YX NAC N1  N 0 1 Y N N 33.464 -31.117 -34.003 0.807  3.253  0.292  NAC 9YX 9  
9YX CAD C4  C 0 1 Y N N 34.765 -31.433 -33.770 -0.499 3.207  0.122  CAD 9YX 10 
9YX CAG C5  C 0 1 N N N 35.385 -30.965 -32.523 -1.300 4.483  0.150  CAG 9YX 11 
9YX CAE C6  C 0 1 Y N N 35.368 -32.265 -34.713 -1.144 1.996  -0.083 CAE 9YX 12 
9YX OAH O5  O 0 1 N N N 36.620 -32.647 -34.521 -2.491 1.953  -0.258 OAH 9YX 13 
9YX CAF C7  C 0 1 Y N N 34.699 -32.703 -35.903 -0.391 0.826  -0.112 CAF 9YX 14 
9YX CAI C8  C 0 1 N N S 35.311 -33.402 -36.978 -1.050 -0.510 -0.339 CAI 9YX 15 
9YX N   N2  N 0 1 N N N 36.675 -32.788 -37.280 -2.086 -0.781 0.697  N   9YX 16 
9YX SAS S1  S 0 1 N N N 35.707 -35.172 -37.025 -2.080 -0.493 -1.865 SAS 9YX 17 
9YX CB  C9  C 0 1 N N N 36.978 -35.132 -38.330 -3.244 -1.790 -1.283 CB  9YX 18 
9YX CA  C10 C 0 1 N N S 37.495 -33.551 -38.271 -3.025 -1.810 0.243  CA  9YX 19 
9YX C   C11 C 0 1 N N N 38.998 -33.380 -37.882 -4.351 -1.595 0.927  C   9YX 20 
9YX OXT O6  O 0 1 N N N 39.286 -32.800 -36.825 -5.350 -2.472 0.745  OXT 9YX 21 
9YX O   O7  O 0 1 N N N 39.890 -33.792 -38.649 -4.514 -0.632 1.638  O   9YX 22 
9YX H1  H1  H 0 1 N N N 32.642 -37.026 -38.311 6.578  -0.847 0.437  H1  9YX 23 
9YX H2  H2  H 0 1 N N N 30.502 -34.138 -39.499 4.610  -1.198 -2.007 H2  9YX 24 
9YX H3  H3  H 0 1 N N N 33.066 -32.541 -38.196 1.671  -0.863 -0.872 H3  9YX 25 
9YX H4  H4  H 0 1 N N N 31.558 -32.214 -37.277 1.571  -0.956 0.903  H4  9YX 26 
9YX H5  H5  H 0 1 N N N 31.712 -31.299 -35.196 2.616  2.242  0.418  H5  9YX 27 
9YX H6  H6  H 0 1 N N N 34.648 -30.395 -31.938 -1.365 4.893  -0.857 H6  9YX 28 
9YX H7  H7  H 0 1 N N N 35.729 -31.830 -31.937 -2.303 4.274  0.523  H7  9YX 29 
9YX H8  H8  H 0 1 N N N 36.243 -30.319 -32.760 -0.812 5.204  0.806  H8  9YX 30 
9YX H9  H9  H 0 1 N N N 36.939 -32.289 -33.701 -2.770 2.030  -1.181 H9  9YX 31 
9YX H10 H10 H 0 1 N N N 34.693 -33.247 -37.875 -0.310 -1.310 -0.373 H10 9YX 32 
9YX H11 H11 H 0 1 N N N 37.190 -32.735 -36.424 -2.572 0.066  0.952  H11 9YX 33 
9YX H13 H13 H 0 1 N N N 36.548 -35.374 -39.313 -4.272 -1.517 -1.520 H13 9YX 34 
9YX H14 H14 H 0 1 N N N 37.800 -35.829 -38.108 -2.992 -2.756 -1.720 H14 9YX 35 
9YX H15 H15 H 0 1 N N N 37.345 -33.122 -39.273 -2.638 -2.788 0.529  H15 9YX 36 
9YX H16 H16 H 0 1 N N N 40.231 -32.746 -36.740 -6.182 -2.291 1.204  H16 9YX 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9YX OAM PAL DOUB N N 1  
9YX OAN PAL SING N N 2  
9YX O   C   DOUB N N 3  
9YX PAL OAO SING N N 4  
9YX PAL OAK SING N N 5  
9YX CB  CA  SING N N 6  
9YX CB  SAS SING N N 7  
9YX CA  C   SING N N 8  
9YX CA  N   SING N N 9  
9YX C   OXT SING N N 10 
9YX N   CAI SING N N 11 
9YX CAJ OAK SING N N 12 
9YX CAJ CAA SING N N 13 
9YX SAS CAI SING N N 14 
9YX CAI CAF SING N N 15 
9YX CAA CAF DOUB Y N 16 
9YX CAA CAB SING Y N 17 
9YX CAF CAE SING Y N 18 
9YX CAB NAC DOUB Y N 19 
9YX CAE OAH SING N N 20 
9YX CAE CAD DOUB Y N 21 
9YX NAC CAD SING Y N 22 
9YX CAD CAG SING N N 23 
9YX OAO H1  SING N N 24 
9YX OAN H2  SING N N 25 
9YX CAJ H3  SING N N 26 
9YX CAJ H4  SING N N 27 
9YX CAB H5  SING N N 28 
9YX CAG H6  SING N N 29 
9YX CAG H7  SING N N 30 
9YX CAG H8  SING N N 31 
9YX OAH H9  SING N N 32 
9YX CAI H10 SING N N 33 
9YX N   H11 SING N N 34 
9YX CB  H13 SING N N 35 
9YX CB  H14 SING N N 36 
9YX CA  H15 SING N N 37 
9YX OXT H16 SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9YX InChI            InChI                1.03  "InChI=1S/C11H15N2O7PS/c1-5-9(14)8(10-13-7(4-22-10)11(15)16)6(2-12-5)3-20-21(17,18)19/h2,7,10,13-14H,3-4H2,1H3,(H,15,16)(H2,17,18,19)/t7-,10+/m1/s1" 
9YX InChIKey         InChI                1.03  CXFXHBNEDOKOBZ-XCBNKYQSSA-N                                                                                                                          
9YX SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c([C@H]2N[C@H](CS2)C(O)=O)c1O"                                                                                                 
9YX SMILES           CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c([CH]2N[CH](CS2)C(O)=O)c1O"                                                                                                   
9YX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)[C@H]2N[C@H](CS2)C(=O)O)O"                                                                                                 
9YX SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C2NC(CS2)C(=O)O)O"                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           9YX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9YX "Create component" 2022-04-17 PDBJ 
9YX "Initial release"  2023-04-05 RCSB 
# 
