data_90X
# 
_chem_comp.id                                    90X 
_chem_comp.name                                  "(S)-1-(2-(2,4-dichlorophenoxy)acetyl)-N-((S)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)-4-(phenethylamino)butan-2-yl)pyrrolidine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H34 Cl2 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(2S)-1-[2-[2,4-bis(chloranyl)phenoxy]ethanoyl]-N-[(2S)-3,4-bis(oxidanylidene)-1-[(3S)-2-oxidanylidenepyrrolidin-3-yl]-4-(2-phenylethylamino)butan-2-yl]pyrrolidine-2-carboxamide" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-11-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        605.509 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     90X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Q5F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
90X N1  N1  N  0 1 N N N N N N 20.654 3.965  -27.309 1.672  -0.889 -1.522 N1  90X 1  
90X C2  C1  C  0 1 Y N N N N N 18.889 8.616  -29.683 -5.660 0.793  -0.009 C2  90X 2  
90X C3  C2  C  0 1 Y N N N N N 20.090 8.548  -28.950 -5.895 2.140  0.222  C3  90X 3  
90X C4  C3  C  0 1 Y N N N N N 20.204 9.240  -27.748 -7.135 2.558  0.665  C4  90X 4  
90X C5  C4  C  0 1 Y N N N N N 19.131 10.008 -27.285 -8.143 1.634  0.879  C5  90X 5  
90X C8  C5  C  0 1 N N N N N N 22.121 5.563  -31.504 -0.987 2.960  -1.153 C8  90X 6  
90X C9  C6  C  0 1 N N N N N N 23.166 4.465  -31.255 0.110  3.446  -2.133 C9  90X 7  
90X C10 C7  C  0 1 N N N N N N 22.943 3.927  -29.849 1.105  2.256  -2.101 C10 90X 8  
90X C11 C8  C  0 1 N N S N N N 21.489 4.297  -29.509 0.176  1.032  -1.961 C11 90X 9  
90X C12 C9  C  0 1 N N N N N N 21.332 4.794  -28.121 0.800  0.018  -1.038 C12 90X 10 
90X C15 C10 C  0 1 N N S N N N 18.361 5.188  -26.073 1.717  -4.183 0.348  C15 90X 11 
90X C7  C11 C  0 1 Y N N N N N 17.853 9.388  -29.214 -6.672 -0.133 0.206  C7  90X 12 
90X C16 C12 C  0 1 N N N N N N 18.754 6.615  -25.679 0.747  -5.387 0.382  C16 90X 13 
90X N   N2  N  0 1 N N N N N N 21.087 5.300  -30.503 -1.093 1.510  -1.394 N   90X 14 
90X C   C13 C  0 1 N N N N N N 19.898 5.883  -30.409 -2.175 0.748  -1.137 C   90X 15 
90X O   O1  O  0 1 N N N N N N 19.107 5.585  -29.499 -2.123 -0.453 -1.298 O   90X 16 
90X C1  C14 C  0 1 N N N N N N 19.618 6.971  -31.430 -3.449 1.388  -0.650 C1  90X 17 
90X C13 C15 C  0 1 N N S N N N 20.623 4.156  -25.885 2.194  -1.943 -0.649 C13 90X 18 
90X C14 C16 C  0 1 N N N N N N 19.171 4.142  -25.342 1.219  -3.122 -0.634 C14 90X 19 
90X C17 C17 C  0 1 N N N N N N 17.457 7.389  -25.425 -0.172 -5.018 1.567  C17 90X 20 
90X C18 C18 C  0 1 N N N N N N 16.884 5.144  -25.701 1.693  -3.648 1.763  C18 90X 21 
90X C19 C19 C  0 1 N N R N N N 21.395 2.977  -25.339 3.553  -2.412 -1.172 C19 90X 22 
90X C6  C20 C  0 1 Y N N N N N 17.948 10.080 -28.021 -7.911 0.290  0.650  C6  90X 23 
90X N2  N3  N  0 1 N N N N N N 16.468 6.345  -25.313 0.628  -4.135 2.424  N2  90X 24 
90X O1  O2  O  0 1 N N N N N N 18.694 7.958  -30.895 -4.443 0.380  -0.451 O1  90X 25 
90X O2  O3  O  0 1 N N N N N N 16.225 4.128  -25.785 2.515  -2.890 2.233  O2  90X 26 
90X O3  O4  O  0 1 N N N N N N 21.237 3.173  -23.071 4.950  -0.838 -2.240 O3  90X 27 
90X O4  O5  O  0 1 N N N N N N 22.496 2.642  -26.239 3.403  -2.923 -2.498 O4  90X 28 
90X O5  O6  O  0 1 N N N N N N 21.735 5.880  -27.727 0.518  0.017  0.142  O5  90X 29 
90X CL  CL1 CL 0 0 N N N N N N 19.274 10.906 -25.729 -9.700 2.163  1.436  CL  90X 30 
90X CL1 CL2 CL 0 0 N N N N N N 16.351 9.476  -30.196 -6.381 -1.820 -0.081 CL1 90X 31 
90X C20 C21 C  0 1 N N N N N N 21.931 3.389  -24.033 4.514  -1.251 -1.187 C20 90X 32 
90X C21 C22 C  0 1 N N N N N N 23.982 4.079  -22.861 5.822  0.457  -0.043 C21 90X 33 
90X C22 C23 C  0 1 N N N N N N 25.350 3.418  -23.061 6.079  0.924  1.391  C22 90X 34 
90X C23 C24 C  0 1 Y N N N N N 25.999 3.841  -24.363 7.040  2.085  1.377  C23 90X 35 
90X C24 C25 C  0 1 Y N N N N N 26.015 5.170  -24.769 6.560  3.378  1.287  C24 90X 36 
90X C25 C26 C  0 1 Y N N N N N 26.618 5.531  -25.970 7.441  4.443  1.274  C25 90X 37 
90X C26 C27 C  0 1 Y N N N N N 27.214 4.568  -26.765 8.802  4.215  1.349  C26 90X 38 
90X C27 C28 C  0 1 Y N N N N N 27.211 3.246  -26.365 9.282  2.922  1.439  C27 90X 39 
90X C28 C29 C  0 1 Y N N N N N 26.591 2.882  -25.175 8.401  1.857  1.458  C28 90X 40 
90X N3  N4  N  0 1 N N N N N N 23.139 3.986  -24.065 4.888  -0.672 -0.029 N3  90X 41 
90X H93 H1  H  0 1 N N N N N N 20.157 3.194  -27.707 1.951  -0.845 -2.450 H93 90X 42 
90X H31 H2  H  0 1 N N N N N N 20.918 7.962  -29.319 -5.109 2.862  0.055  H31 90X 43 
90X H41 H3  H  0 1 N N N N N N 21.118 9.184  -27.175 -7.318 3.607  0.845  H41 90X 44 
90X H81 H4  H  0 1 N N N N N N 22.560 6.561  -31.360 -0.688 3.153  -0.123 H81 90X 45 
90X H82 H5  H  0 1 N N N N N N 21.709 5.487  -32.521 -1.936 3.451  -1.372 H82 90X 46 
90X H92 H6  H  0 1 N N N N N N 23.042 3.656  -31.990 -0.296 3.589  -3.135 H92 90X 47 
90X H91 H7  H  0 1 N N N N N N 24.179 4.885  -31.339 0.581  4.360  -1.770 H91 90X 48 
90X H13 H8  H  0 1 N N N N N N 23.080 2.836  -29.826 1.675  2.205  -3.029 H13 90X 49 
90X H10 H9  H  0 1 N N N N N N 23.638 4.399  -29.139 1.772  2.335  -1.242 H10 90X 50 
90X H14 H10 H  0 1 N N N N N N 20.869 3.398  -29.636 0.003  0.585  -2.940 H14 90X 51 
90X H18 H11 H  0 1 N N N N N N 18.475 5.059  -27.159 2.721  -4.511 0.081  H18 90X 52 
90X H2A H12 H  0 1 N N N N N N 19.368 6.598  -24.766 0.178  -5.456 -0.545 H2A 90X 53 
90X H19 H13 H  0 1 N N N N N N 19.322 7.088  -26.494 1.283  -6.315 0.579  H19 90X 54 
90X H12 H14 H  0 1 N N N N N N 19.178 6.516  -32.330 -3.260 1.903  0.292  H12 90X 55 
90X H11 H15 H  0 1 N N N N N N 20.563 7.468  -31.695 -3.802 2.104  -1.392 H11 90X 56 
90X H15 H16 H  0 1 N N N N N N 21.115 5.097  -25.598 2.308  -1.554 0.362  H15 90X 57 
90X H16 H17 H  0 1 N N N N N N 19.178 4.367  -24.265 1.155  -3.553 -1.633 H16 90X 58 
90X H17 H18 H  0 1 N N N N N N 18.726 3.150  -25.506 0.233  -2.774 -0.325 H17 90X 59 
90X H2C H19 H  0 1 N N N N N N 17.522 7.973  -24.495 -1.058 -4.494 1.209  H2C 90X 60 
90X H2B H20 H  0 1 N N N N N N 17.228 8.061  -26.265 -0.461 -5.916 2.115  H2B 90X 61 
90X H6  H22 H  0 1 N N N N N N 17.117 10.669 -27.663 -8.699 -0.430 0.818  H6  90X 62 
90X H94 H23 H  0 1 N N N N N N 15.543 6.512  -24.971 0.417  -3.930 3.348  H94 90X 63 
90X H22 H25 H  0 1 N N N N N N 24.134 5.141  -22.616 5.393  1.276  -0.620 H22 90X 64 
90X H21 H26 H  0 1 N N N N N N 23.466 3.580  -22.027 6.762  0.145  -0.498 H21 90X 65 
90X H23 H27 H  0 1 N N N N N N 25.219 2.326  -23.068 5.139  1.236  1.846  H23 90X 66 
90X H24 H28 H  0 1 N N N N N N 26.008 3.704  -22.227 6.508  0.105  1.969  H24 90X 67 
90X H25 H29 H  0 1 N N N N N N 25.557 5.927  -24.149 5.496  3.556  1.228  H25 90X 68 
90X H26 H30 H  0 1 N N N N N N 26.621 6.565  -26.282 7.066  5.454  1.204  H26 90X 69 
90X H27 H31 H  0 1 N N N N N N 27.681 4.850  -27.697 9.491  5.047  1.334  H27 90X 70 
90X H28 H32 H  0 1 N N N N N N 27.690 2.495  -26.976 10.346 2.744  1.498  H28 90X 71 
90X H29 H33 H  0 1 N N N N N N 26.569 1.844  -24.879 8.776  0.847  1.528  H29 90X 72 
90X H32 H34 H  0 1 N N N N N N 23.470 4.374  -24.925 4.540  -1.002 0.814  H32 90X 73 
90X H1  H35 H  0 1 N Y N N N N 20.721 2.116  -25.220 3.941  -3.197 -0.522 H1  90X 74 
90X H42 H36 H  0 1 N N N N N N 22.977 1.901  -25.890 3.061  -2.277 -3.132 H42 90X 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
90X C8  C9  SING N N 1  
90X C8  N   SING N N 2  
90X C1  O1  SING N N 3  
90X C1  C   SING N N 4  
90X C9  C10 SING N N 5  
90X O1  C2  SING N N 6  
90X N   C   SING N N 7  
90X N   C11 SING N N 8  
90X C   O   DOUB N N 9  
90X CL1 C7  SING N N 10 
90X C10 C11 SING N N 11 
90X C2  C7  DOUB Y N 12 
90X C2  C3  SING Y N 13 
90X C11 C12 SING N N 14 
90X C7  C6  SING Y N 15 
90X C3  C4  DOUB Y N 16 
90X C12 O5  DOUB N N 17 
90X C12 N1  SING N N 18 
90X C6  C5  DOUB Y N 19 
90X C4  C5  SING Y N 20 
90X N1  C13 SING N N 21 
90X C5  CL  SING N N 22 
90X C26 C27 DOUB Y N 23 
90X C26 C25 SING Y N 24 
90X C27 C28 SING Y N 25 
90X O4  C19 SING N N 26 
90X C15 C18 SING N N 27 
90X C15 C16 SING N N 28 
90X C15 C14 SING N N 29 
90X C25 C24 DOUB Y N 30 
90X C13 C14 SING N N 31 
90X C13 C19 SING N N 32 
90X O2  C18 DOUB N N 33 
90X C18 N2  SING N N 34 
90X C16 C17 SING N N 35 
90X C17 N2  SING N N 36 
90X C19 C20 SING N N 37 
90X C28 C23 DOUB Y N 38 
90X C24 C23 SING Y N 39 
90X C23 C22 SING N N 40 
90X N3  C20 SING N N 41 
90X N3  C21 SING N N 42 
90X C20 O3  DOUB N N 43 
90X C22 C21 SING N N 44 
90X N1  H93 SING N N 45 
90X C3  H31 SING N N 46 
90X C4  H41 SING N N 47 
90X C8  H81 SING N N 48 
90X C8  H82 SING N N 49 
90X C9  H92 SING N N 50 
90X C9  H91 SING N N 51 
90X C10 H13 SING N N 52 
90X C10 H10 SING N N 53 
90X C11 H14 SING N N 54 
90X C15 H18 SING N N 55 
90X C16 H2A SING N N 56 
90X C16 H19 SING N N 57 
90X C1  H12 SING N N 58 
90X C1  H11 SING N N 59 
90X C13 H15 SING N N 60 
90X C14 H16 SING N N 61 
90X C14 H17 SING N N 62 
90X C17 H2C SING N N 63 
90X C17 H2B SING N N 64 
90X C6  H6  SING N N 65 
90X N2  H94 SING N N 66 
90X C21 H22 SING N N 67 
90X C21 H21 SING N N 68 
90X C22 H23 SING N N 69 
90X C22 H24 SING N N 70 
90X C24 H25 SING N N 71 
90X C25 H26 SING N N 72 
90X C26 H27 SING N N 73 
90X C27 H28 SING N N 74 
90X C28 H29 SING N N 75 
90X N3  H32 SING N N 76 
90X C19 H1  SING N N 77 
90X O4  H42 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
90X InChI            InChI                1.06    "InChI=1S/C29H34Cl2N4O6/c30-20-8-9-24(21(31)16-20)41-17-25(36)35-14-4-7-23(35)28(39)34-22(15-19-11-13-32-27(19)38)26(37)29(40)33-12-10-18-5-2-1-3-6-18/h1-3,5-6,8-9,16,19,22-23,26,37H,4,7,10-15,17H2,(H,32,38)(H,33,40)(H,34,39)/t19-,22-,23-,26+/m0/s1" 
90X InChIKey         InChI                1.06    GYPKOWHKPVSQIO-RZOLNQLPSA-N                                                                                                                                                                                                                               
90X SMILES_CANONICAL CACTVS               3.385   "O[C@H]([C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2CCCN2C(=O)COc3ccc(Cl)cc3Cl)C(=O)NCCc4ccccc4"                                                                                                                                                                   
90X SMILES           CACTVS               3.385   "O[CH]([CH](C[CH]1CCNC1=O)NC(=O)[CH]2CCCN2C(=O)COc3ccc(Cl)cc3Cl)C(=O)NCCc4ccccc4"                                                                                                                                                                         
90X SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CCNC(=O)[C@@H]([C@H](C[C@@H]2CCNC2=O)NC(=O)[C@@H]3CCCN3C(=O)COc4ccc(cc4Cl)Cl)O"                                                                                                                                                                
90X SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CCNC(=O)C(C(CC2CCNC2=O)NC(=O)C3CCCN3C(=O)COc4ccc(cc4Cl)Cl)O"                                                                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           90X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-1-[2-[2,4-bis(chloranyl)phenoxy]ethanoyl]-~{N}-[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-(2-phenylethylamino)butan-2-yl]pyrrolidine-2-carboxamide" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      90X 
_pdbx_chem_comp_synonyms.name         "(2S)-1-[2-[2,4-bis(chloranyl)phenoxy]ethanoyl]-N-[(2S)-3,4-bis(oxidanylidene)-1-[(3S)-2-oxidanylidenepyrrolidin-3-yl]-4-(2-phenylethylamino)butan-2-yl]pyrrolidine-2-carboxamide" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
90X "Create component"   2021-11-10 PDBE 
90X "Modify descriptor"  2022-08-22 RCSB 
90X "Modify coordinates" 2022-11-15 PDBE 
90X "Initial release"    2022-11-23 RCSB 
90X "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            90X 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
