data_8VX
#

_chem_comp.id                                   8VX
_chem_comp.name                                 "(R)-2-(6-(5-chloro-2-methoxybenzyl)-3-(2,2-dimethylhydrazono)-7-oxo-1,4-diazepan-1-yl)-N-(3-(methylsulfonyl)phenyl)acetamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H30 Cl N5 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-[(3Z,6R)-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxidanylidene-1,4-diazepan-1-yl]-N-(3-methylsulfonylphenyl)ethanamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-10-11
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       536.043
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8VX
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5YJK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8VX  C1   C1   C   0  1  N  N  N  18.947  38.308  22.926  -1.124   0.552   1.450  C1   8VX   1  
8VX  O2   O1   O   0  1  N  N  N  17.842  38.418  23.439  -0.497   0.207   2.429  O2   8VX   2  
8VX  CL2  CL1  CL  0  0  N  N  N  16.474  34.242  17.474  -3.530  -5.574   0.479  CL2  8VX   3  
8VX  C9   C2   C   0  1  Y  N  N  17.159  35.783  17.786  -4.065  -3.980   0.045  C9   8VX   4  
8VX  C10  C3   C   0  1  Y  N  N  17.173  36.287  19.083  -3.179  -2.919   0.086  C10  8VX   5  
8VX  C8   C4   C   0  1  Y  N  N  17.692  36.544  16.743  -5.377  -3.773  -0.346  C8   8VX   6  
8VX  C7   C5   C   0  1  Y  N  N  18.268  37.784  16.986  -5.804  -2.506  -0.691  C7   8VX   7  
8VX  C6   C6   C   0  1  Y  N  N  18.305  38.313  18.288  -4.918  -1.440  -0.646  C6   8VX   8  
8VX  O23  O2   O   0  1  N  N  N  18.848  39.518  18.580  -5.336  -0.192  -0.985  O23  8VX   9  
8VX  C24  C7   C   0  1  N  N  N  19.429  40.309  17.558  -6.684  -0.062  -1.443  C24  8VX  10  
8VX  C5   C8   C   0  1  Y  N  N  17.733  37.550  19.327  -3.602  -1.650  -0.259  C5   8VX  11  
8VX  C4   C9   C   0  1  N  N  N  17.706  37.997  20.761  -2.636  -0.494  -0.215  C4   8VX  12  
8VX  C3   C10  C   0  1  N  N  R  19.040  37.825  21.480  -2.513   0.013   1.224  C3   8VX  13  
8VX  C11  C11  C   0  1  N  N  N  19.657  36.423  21.323  -3.533   1.131   1.461  C11  8VX  14  
8VX  N12  N1   N   0  1  N  N  N  21.066  36.271  21.628  -3.642   1.949   0.248  N12  8VX  15  
8VX  C13  C12  C   0  1  N  N  N  21.896  37.092  22.380  -2.519   2.595  -0.255  C13  8VX  16  
8VX  N14  N2   N   0  1  N  N  N  23.144  36.901  22.598  -2.509   3.881  -0.389  N14  8VX  17  
8VX  N62  N3   N   0  1  N  N  N  23.725  35.792  22.060  -3.656   4.625  -0.085  N62  8VX  18  
8VX  C63  C13  C   0  1  N  N  N  24.676  36.127  20.994  -4.367   5.343  -1.146  C63  8VX  19  
8VX  C68  C14  C   0  1  N  N  N  24.089  34.807  23.067  -4.145   4.686   1.295  C68  8VX  20  
8VX  C15  C15  C   0  1  N  N  N  21.392  38.391  23.010  -1.309   1.778  -0.643  C15  8VX  21  
8VX  N16  N4   N   0  1  N  N  N  20.059  38.506  23.613  -0.575   1.418   0.578  N16  8VX  22  
8VX  C17  C16  C   0  1  N  N  N  20.032  38.980  25.005   0.746   1.993   0.842  C17  8VX  23  
8VX  C19  C17  C   0  1  N  N  N  19.446  40.373  25.164   1.803   1.151   0.175  C19  8VX  24  
8VX  O30  O3   O   0  1  N  N  N  19.840  41.204  24.362   1.480   0.223  -0.535  O30  8VX  25  
8VX  N20  N5   N   0  1  N  N  N  18.556  40.576  26.143   3.108   1.430   0.368  N20  8VX  26  
8VX  C21  C18  C   0  1  Y  N  N  17.889  41.779  26.477   4.085   0.739  -0.356  C21  8VX  27  
8VX  C25  C19  C   0  1  Y  N  N  18.121  43.029  25.844   5.308   0.444   0.232  C25  8VX  28  
8VX  C29  C20  C   0  1  Y  N  N  16.938  41.743  27.502   3.832   0.342  -1.662  C29  8VX  29  
8VX  C28  C21  C   0  1  Y  N  N  16.238  42.907  27.868   4.800  -0.340  -2.375  C28  8VX  30  
8VX  C27  C22  C   0  1  Y  N  N  16.465  44.133  27.222   6.018  -0.627  -1.788  C27  8VX  31  
8VX  C26  C23  C   0  1  Y  N  N  17.425  44.198  26.209   6.271  -0.238  -0.486  C26  8VX  32  
8VX  S31  S1   S   0  1  N  N  N  17.807  45.711  25.305   7.824  -0.612   0.259  S31  8VX  33  
8VX  O32  O4   O   0  1  N  N  N  18.327  45.282  24.013   8.722  -0.714  -0.837  O32  8VX  34  
8VX  O33  O5   O   0  1  N  N  N  16.626  46.554  25.155   7.988   0.393   1.250  O33  8VX  35  
8VX  C72  C24  C   0  1  N  N  N  19.121  46.664  26.139   7.575  -2.234   1.032  C72  8VX  36  
8VX  H1   H1   H   0  1  N  N  N  16.756  35.710  19.895  -2.155  -3.082   0.388  H1   8VX  37  
8VX  H2   H2   H   0  1  N  N  N  17.656  36.163  15.733  -6.066  -4.604  -0.381  H2   8VX  38  
8VX  H3   H3   H   0  1  N  N  N  18.691  38.347  16.167  -6.827  -2.346  -0.997  H3   8VX  39  
8VX  H4   H4   H   0  1  N  N  N  19.812  41.245  17.991  -6.888   0.982  -1.680  H4   8VX  40  
8VX  H5   H5   H   0  1  N  N  N  20.257  39.755  17.091  -6.824  -0.671  -2.336  H5   8VX  41  
8VX  H6   H6   H   0  1  N  N  N  18.669  40.542  16.798  -7.367  -0.398  -0.663  H6   8VX  42  
8VX  H7   H7   H   0  1  N  N  N  17.431  39.062  20.788  -1.659  -0.824  -0.568  H7   8VX  43  
8VX  H8   H8   H   0  1  N  N  N  16.945  37.408  21.294  -3.001   0.310  -0.853  H8   8VX  44  
8VX  H9   H9   H   0  1  N  N  N  19.739  38.513  20.981  -2.702  -0.807   1.916  H9   8VX  45  
8VX  H10  H10  H   0  1  N  N  N  19.102  35.743  21.986  -4.504   0.694   1.695  H10  8VX  46  
8VX  H11  H11  H   0  1  N  N  N  19.512  36.115  20.277  -3.203   1.755   2.292  H11  8VX  47  
8VX  H13  H13  H   0  1  N  N  N  25.118  35.203  20.592  -5.126   4.692  -1.579  H13  8VX  48  
8VX  H14  H14  H   0  1  N  N  N  24.151  36.662  20.189  -4.844   6.229  -0.728  H14  8VX  49  
8VX  H15  H15  H   0  1  N  N  N  25.473  36.767  21.401  -3.660   5.641  -1.920  H15  8VX  50  
8VX  H16  H16  H   0  1  N  N  N  23.259  34.686  23.779  -3.441   4.177   1.953  H16  8VX  51  
8VX  H17  H17  H   0  1  N  N  N  24.296  33.843  22.579  -4.241   5.727   1.601  H17  8VX  52  
8VX  H18  H18  H   0  1  N  N  N  24.987  35.147  23.604  -5.118   4.198   1.357  H18  8VX  53  
8VX  H19  H19  H   0  1  N  N  N  22.110  38.645  23.804  -1.630   0.874  -1.160  H19  8VX  54  
8VX  H20  H20  H   0  1  N  N  N  21.436  39.153  22.218  -0.665   2.366  -1.297  H20  8VX  55  
8VX  H21  H21  H   0  1  N  N  N  19.427  38.279  25.599   0.786   3.008   0.446  H21  8VX  56  
8VX  H22  H22  H   0  1  N  N  N  21.063  38.991  25.388   0.924   2.016   1.918  H22  8VX  57  
8VX  H23  H23  H   0  1  N  N  N  18.335  39.781  26.707   3.369   2.109   1.010  H23  8VX  58  
8VX  H24  H24  H   0  1  N  N  N  18.857  43.085  25.055   5.506   0.748   1.249  H24  8VX  59  
8VX  H25  H25  H   0  1  N  N  N  16.740  40.814  28.016   2.880   0.566  -2.121  H25  8VX  60  
8VX  H26  H26  H   0  1  N  N  N  15.510  42.857  28.664   4.604  -0.649  -3.391  H26  8VX  61  
8VX  H27  H27  H   0  1  N  N  N  15.906  45.013  27.504   6.773  -1.161  -2.348  H27  8VX  62  
8VX  H28  H28  H   0  1  N  N  N  18.761  47.004  27.121   7.304  -2.963   0.268  H28  8VX  63  
8VX  H29  H29  H   0  1  N  N  N  20.007  46.026  26.275   8.497  -2.548   1.523  H29  8VX  64  
8VX  H30  H30  H   0  1  N  N  N  19.388  47.536  25.524   6.776  -2.167   1.770  H30  8VX  65  
8VX  H12  H12  H   0  1  N  N  N  21.503  35.459  21.242  -4.496   2.038  -0.203  H12  8VX  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8VX  C8   C7   DOUB  Y  N   1  
8VX  C8   C9   SING  Y  N   2  
8VX  C7   C6   SING  Y  N   3  
8VX  CL2  C9   SING  N  N   4  
8VX  C24  O23  SING  N  N   5  
8VX  C9   C10  DOUB  Y  N   6  
8VX  C6   O23  SING  N  N   7  
8VX  C6   C5   DOUB  Y  N   8  
8VX  C10  C5   SING  Y  N   9  
8VX  C5   C4   SING  N  N  10  
8VX  C4   C3   SING  N  N  11  
8VX  C63  N62  SING  N  N  12  
8VX  C11  C3   SING  N  N  13  
8VX  C11  N12  SING  N  N  14  
8VX  C3   C1   SING  N  N  15  
8VX  N12  C13  SING  N  N  16  
8VX  N62  N14  SING  N  N  17  
8VX  N62  C68  SING  N  N  18  
8VX  C13  N14  DOUB  N  Z  19  
8VX  C13  C15  SING  N  N  20  
8VX  C1   O2   DOUB  N  N  21  
8VX  C1   N16  SING  N  N  22  
8VX  C15  N16  SING  N  N  23  
8VX  N16  C17  SING  N  N  24  
8VX  O32  S31  DOUB  N  N  25  
8VX  O30  C19  DOUB  N  N  26  
8VX  C17  C19  SING  N  N  27  
8VX  O33  S31  DOUB  N  N  28  
8VX  C19  N20  SING  N  N  29  
8VX  S31  C72  SING  N  N  30  
8VX  S31  C26  SING  N  N  31  
8VX  C25  C26  DOUB  Y  N  32  
8VX  C25  C21  SING  Y  N  33  
8VX  N20  C21  SING  N  N  34  
8VX  C26  C27  SING  Y  N  35  
8VX  C21  C29  DOUB  Y  N  36  
8VX  C27  C28  DOUB  Y  N  37  
8VX  C29  C28  SING  Y  N  38  
8VX  C10  H1   SING  N  N  39  
8VX  C8   H2   SING  N  N  40  
8VX  C7   H3   SING  N  N  41  
8VX  C24  H4   SING  N  N  42  
8VX  C24  H5   SING  N  N  43  
8VX  C24  H6   SING  N  N  44  
8VX  C4   H7   SING  N  N  45  
8VX  C4   H8   SING  N  N  46  
8VX  C3   H9   SING  N  N  47  
8VX  C11  H10  SING  N  N  48  
8VX  C11  H11  SING  N  N  49  
8VX  C63  H13  SING  N  N  50  
8VX  C63  H14  SING  N  N  51  
8VX  C63  H15  SING  N  N  52  
8VX  C68  H16  SING  N  N  53  
8VX  C68  H17  SING  N  N  54  
8VX  C68  H18  SING  N  N  55  
8VX  C15  H19  SING  N  N  56  
8VX  C15  H20  SING  N  N  57  
8VX  C17  H21  SING  N  N  58  
8VX  C17  H22  SING  N  N  59  
8VX  N20  H23  SING  N  N  60  
8VX  C25  H24  SING  N  N  61  
8VX  C29  H25  SING  N  N  62  
8VX  C28  H26  SING  N  N  63  
8VX  C27  H27  SING  N  N  64  
8VX  C72  H28  SING  N  N  65  
8VX  C72  H29  SING  N  N  66  
8VX  C72  H30  SING  N  N  67  
8VX  N12  H12  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8VX  InChI             InChI                 1.03   "InChI=1S/C24H30ClN5O5S/c1-29(2)28-22-14-30(15-23(31)27-19-6-5-7-20(12-19)36(4,33)34)24(32)17(13-26-22)10-16-11-18(25)8-9-21(16)35-3/h5-9,11-12,17H,10,13-15H2,1-4H3,(H,26,28)(H,27,31)/t17-/m1/s1"  
8VX  InChIKey          InChI                 1.03   NWZUZBYLXNQLIF-QGZVFWFLSA-N  
8VX  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc(Cl)cc1C[C@@H]2CN\C(CN(CC(=O)Nc3cccc(c3)[S](C)(=O)=O)C2=O)=N/N(C)C"  
8VX  SMILES            CACTVS                3.385  "COc1ccc(Cl)cc1C[CH]2CNC(CN(CC(=O)Nc3cccc(c3)[S](C)(=O)=O)C2=O)=NN(C)C"  
8VX  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CN(C)/N=C\1/CN(C(=O)[C@@H](CN1)Cc2cc(ccc2OC)Cl)CC(=O)Nc3cccc(c3)S(=O)(=O)C"  
8VX  SMILES            "OpenEye OEToolkits"  2.0.6  "CN(C)N=C1CN(C(=O)C(CN1)Cc2cc(ccc2OC)Cl)CC(=O)Nc3cccc(c3)S(=O)(=O)C"  
#
_pdbx_chem_comp_identifier.comp_id          8VX
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "2-[(3~{Z},6~{R})-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxidanylidene-1,4-diazepan-1-yl]-~{N}-(3-methylsulfonylphenyl)ethanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8VX  "Create component"  2017-10-11  PDBJ  
8VX  "Modify name"       2017-11-20  PDBJ  
8VX  "Initial release"   2017-12-06  RCSB  
8VX  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     8VX
_pdbx_chem_comp_synonyms.name        "2-[(3Z,6R)-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxidanylidene-1,4-diazepan-1-yl]-N-(3-methylsulfonylphenyl)ethanamide"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
